Strain identifier

BacDive ID: 8348

Type strain: Yes

Species: Mycobacterium parakoreense

Strain Designation: 299

Strain history: <- BJ Kim, Seoul Natl. Univ. <- KIT(Korea Institute of Tuberculosis)

NCBI tax ID(s): 1069221 (species)

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General

@ref: 17667

BacDive-ID: 8348

DSM-Number: 45575

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, ovoid-shaped

description: Mycobacterium parakoreense 299 is an aerobe, mesophilic, ovoid-shaped bacterium that was isolated from sputum of a patient with a symptomatic pulmonary infection.

NCBI tax id

  • NCBI tax id: 1069221
  • Matching level: species

strain history

@refhistory
17667<- B.-J. Kim, Seoul Natl. Univ., Republic of Korea; strain 299
67771<- BJ Kim, Seoul Natl. Univ. <- KIT(Korea Institute of Tuberculosis)

doi: 10.13145/bacdive8348.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium parakoreense
  • full scientific name: Mycobacterium parakoreense Kim et al. 2013

  • synonyms

    • @ref: 20215
    • synonym: Mycolicibacillus parakoreensis

@ref: 17667

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium parakoreense

full scientific name: Mycobacterium parakoreense Kim et al. 2013

strain designation: 299

type strain: yes

Morphology

cell morphology

@refcell shapegram stain
30813ovoid-shaped
67771positive

pigmentation

  • @ref: 30813
  • production: yes

multimedia

  • @ref: 17667
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45575.jpg
  • caption: Medium 645 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 17667
  • name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/645
  • composition: Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water

culture temp

@refgrowthtypetemperaturerange
17667positivegrowth37mesophilic
30813positivegrowth26-44
30813positiveoptimum37mesophilic
67771positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30813aerobe
67771aerobe

spore formation

  • @ref: 30813
  • spore formation: no

metabolite utilization

  • @ref: 30813
  • Chebi-ID: 17632
  • metabolite: nitrate
  • utilization activity: +
  • kind of utilization tested: reduction

enzymes

@refvalueactivityec
30813catalase+1.11.1.6
30813pyrazinamidase+3.5.1.B15

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
17667sputum of a patient with a symptomatic pulmonary infectionSeoulRepublic of KoreaKORAsia
67771sputum of a patient with a symptomatic pulmonary infectionRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Infection#Patient
#Host Body-Site#Oral cavity and airways#Airways
#Host Body Product#Fluids#Sputum

Sequence information

16S sequences

  • @ref: 17667
  • description: Mycobacterium parakoreense strain 299 16S ribosomal RNA gene, complete sequence
  • accession: JF271823
  • length: 1465
  • database: ena
  • NCBI tax ID: 1069221

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycolicibacillus parakoreensis DSM 45575GCA_022370835completencbi1069221
66792Mycolicibacillus parakoreensis DSM 45575GCA_025822825scaffoldncbi1069221

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno98.755no
flagellatedno98.755no
gram-positiveyes93.434yes
gram-positiveyes93.434yes
anaerobicno99.292yes
anaerobicno99.292yes
aerobicyes90.104no
aerobicyes90.104no
halophileno87.046no
halophileno87.046no
spore-formingno93.466yes
spore-formingno93.466yes
motileno95.133no
motileno95.133no
glucose-fermentno92.119no
glucose-fermentno92.119no
thermophileno92.797no
thermophileno92.797no
glucose-utilyes67.774no
glucose-utilyes67.774no

External links

@ref: 17667

culture collection no.: DSM 45575, KCTC 19818

straininfo link

  • @ref: 77750
  • straininfo: 403412

literature

  • topic: Phylogeny
  • Pubmed-ID: 23159753
  • title: Mycobacterium parakoreense sp. nov., a slowly growing non-chromogenic species related to Mycobacterium koreense, isolated from a human clinical specimen.
  • authors: Kim BJ, Hong SH, Yu HK, Park YG, Jeong J, Lee SH, Kim SR, Kim K, Kook YH, Kim BJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.045070-0
  • year: 2012
  • mesh: DNA, Bacterial/genetics, Fatty Acids/analysis, Genes, Bacterial, Humans, Molecular Sequence Data, Mycobacterium/*classification/genetics/isolation & purification, Mycobacterium Infections/microbiology, Mycolic Acids/analysis, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sputum/*microbiology
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
17667Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45575)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45575
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30813Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2714428776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
77750Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID403412.1StrainInfo: A central database for resolving microbial strain identifiers