Strain identifier

BacDive ID: 8348

Type strain: Yes

Species: Mycobacterium parakoreense

Strain Designation: 299

Culture col. no.: DSM 45575, KCTC 19818

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 17667

BacDive-ID: 8348

DSM-Number: 45575

keywords: ovoid-shaped, mesophilic, aerobe, Bacteria, 16S sequence

description: Mycobacterium parakoreense 299 is an aerobe, mesophilic, ovoid-shaped bacterium that was isolated from sputum of a patient with a symptomatic pulmonary infection.

strain history: <- B.-J. Kim, Seoul Natl. Univ., Republic of Korea; strain 299

doi: 10.13145/bacdive8348.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium parakoreense
  • full scientific name: Mycobacterium parakoreense Kim et al. 2013
  • synonyms

    • @ref: 20215
    • synonym: Mycolicibacillus parakoreensis

@ref: 17667

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium parakoreense

full scientific name: Mycobacterium parakoreense Kim et al. 2013

strain designation: 299

type strain: yes

Morphology

cell morphology

  • @ref: 30813
  • cell shape: ovoid-shaped

multimedia

  • @ref: 17667
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45575.jpg
  • caption: Medium 645 37°C
  • license or copyright: (C) Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
  • intellectual property rights: © Leibniz-Institut DSMZ

pigmentation

  • @ref: 30813
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 17667
  • name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium645.pdf

culture temp

@refgrowthtypetemperaturerange
17667positivegrowth37mesophilic
30813positivegrowth26-44
30813positiveoptimum37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 30813
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30813
  • spore formation: no

metabolite utilization

  • @ref: 30813
  • Chebi-ID: 17632
  • metabolite: nitrate
  • utilization activity: +
  • kind of utilization tested: reduction

enzymes

@refvalueactivityec
30813catalase+1.11.1.6
30813pyrazinamidase+3.5.1.B15

Isolation, sampling and environmental information

isolation

  • @ref: 17667
  • sample type: sputum of a patient with a symptomatic pulmonary infection
  • geographic location: Seoul
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Infection#Patient
#Host Body-Site#Oral cavity and airways#Airways
#Host Body Product#Fluids#Sputum

Sequence information

16S sequences

  • @ref: 17667
  • description: Mycobacterium parakoreense strain 299 16S ribosomal RNA gene, complete sequence
  • accession: JF271823
  • length: 1465
  • database: ena
  • NCBI tax ID: 1069221

External links

@ref: 17667

culture collection no.: DSM 45575, KCTC 19818

straininfo link

@refpassport
20218http://www.straininfo.net/strains/887356
20218http://www.straininfo.net/strains/887357

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
17667Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45575)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45575
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2714410.1099/ijs.0.045070-0
30813Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information27144