Strain identifier
BacDive ID: 8348
Type strain: 
Species: Mycobacterium parakoreense
Strain Designation: 299
Strain history: <- BJ Kim, Seoul Natl. Univ. <- KIT(Korea Institute of Tuberculosis)
NCBI tax ID(s): 1069221 (species)
version 9.1 (current version)
General
@ref: 17667
BacDive-ID: 8348
DSM-Number: 45575
keywords: genome sequence, 16S sequence, Bacteria, aerobe, ovoid-shaped
description: Mycobacterium parakoreense 299 is an aerobe, ovoid-shaped bacterium that was isolated from sputum of a patient with a symptomatic pulmonary infection.
NCBI tax id
- NCBI tax id: 1069221
- Matching level: species
strain history
| @ref | history |
|---|---|
| 17667 | <- B.-J. Kim, Seoul Natl. Univ., Republic of Korea; strain 299 |
| 67771 | <- BJ Kim, Seoul Natl. Univ. <- KIT(Korea Institute of Tuberculosis) |
doi: 10.13145/bacdive8348.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium parakoreense
- full scientific name: Mycobacterium parakoreense Kim et al. 2013
synonyms
- @ref: 20215
- synonym: Mycolicibacillus parakoreensis
@ref: 17667
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium parakoreense
full scientific name: Mycobacterium parakoreense Kim et al. 2013
strain designation: 299
type strain: yes
Morphology
cell morphology
| @ref | cell shape | gram stain | motility | confidence |
|---|---|---|---|---|
| 30813 | ovoid-shaped | |||
| 67771 | positive | |||
| 69480 | no | 93 | ||
| 69480 | positive | 90.145 |
pigmentation
- @ref: 30813
- production: yes
multimedia
- @ref: 17667
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45575.jpg
- caption: Medium 645 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 17667
- name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
- growth: yes
- link: https://mediadive.dsmz.de/medium/645
- composition: Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 17667 | positive | growth | 37 |
| 30813 | positive | growth | 26-44 |
| 30813 | positive | optimum | 37 |
| 67771 | positive | growth | 37 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 30813 | aerobe |
| 67771 | aerobe |
spore formation
- @ref: 30813
- spore formation: no
metabolite utilization
- @ref: 30813
- Chebi-ID: 17632
- metabolite: nitrate
- utilization activity: +
- kind of utilization tested: reduction
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30813 | catalase | + | 1.11.1.6 |
| 30813 | pyrazinamidase | + | 3.5.1.B15 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 17667 | sputum of a patient with a symptomatic pulmonary infection | Seoul | Republic of Korea | KOR | Asia |
| 67771 | sputum of a patient with a symptomatic pulmonary infection | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Disease | |
| #Infection | #Patient | |
| #Host Body-Site | #Oral cavity and airways | #Airways |
| #Host Body Product | #Fluids | #Sputum |
Sequence information
16S sequences
- @ref: 17667
- description: Mycobacterium parakoreense strain 299 16S ribosomal RNA gene, complete sequence
- accession: JF271823
- length: 1465
- database: nuccore
- NCBI tax ID: 1069221
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycolicibacillus parakoreensis DSM 45575 | GCA_022370835 | complete | ncbi | 1069221 |
| 66792 | Mycolicibacillus parakoreensis DSM 45575 | GCA_025822825 | scaffold | ncbi | 1069221 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 90.145 | yes |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.063 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 80.837 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 71.695 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.422 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 93 | no |
External links
@ref: 17667
culture collection no.: DSM 45575, KCTC 19818
straininfo link
- @ref: 77750
- straininfo: 403412
literature
- topic: Phylogeny
- Pubmed-ID: 23159753
- title: Mycobacterium parakoreense sp. nov., a slowly growing non-chromogenic species related to Mycobacterium koreense, isolated from a human clinical specimen.
- authors: Kim BJ, Hong SH, Yu HK, Park YG, Jeong J, Lee SH, Kim SR, Kim K, Kook YH, Kim BJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.045070-0
- year: 2012
- mesh: DNA, Bacterial/genetics, Fatty Acids/analysis, Genes, Bacterial, Humans, Molecular Sequence Data, Mycobacterium/*classification/genetics/isolation & purification, Mycobacterium Infections/microbiology, Mycolic Acids/analysis, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sputum/*microbiology
- topic2: Pathogenicity
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 17667 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45575) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45575 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30813 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27144 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 77750 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID403412.1 | StrainInfo: A central database for resolving microbial strain identifiers |