Name: Mycobacterium iranicum M05
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 8347

Type strain:

Species: Mycobacterium iranicum

Strain Designation: M05

Culture col. no.: DSM 45541, CCUG 62053, JCM 17461

Strain history: H. Shojaei M05.

NCBI tax ID(s): 912594 (species)

SI-ID 396766

DSM 45541, CCUG 62053

Special Collections

Other strains from Mycobacterium iranicum

Section

Mycobacterium iranicum M05 is a microaerophile, Gram-positive, ovoid-shaped human pathogen that was isolated from bronchoalveolar lavage of a 60-year-old, HIV-negative, female patient suffering from chronic pulmonary disease.

Gram-positive
ovoid-shaped
human pathogen
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium iranicum**
	Full Scientific Name (LPSN)	Mycobacterium iranicum Shojaei et al. 2013

Synonym

Mycolicibacterium iranicum

Information on morphological and physiological properties Morphology

[Ref.: #30747]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %91.608

[Ref.: #30747]	Cell shape	ovoid-shaped

[Ref.: #30747]	Motility	no

[Ref.: #62781]

Incubation period

3 days

[Ref.: #30747]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17617]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #17617]

Culture medium growth

[Ref.: #17617]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17617]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17617]	growth	37 °C
[Ref.: #30747]	growth	25-40 °C
[Ref.: #30747]	optimum	37 °C
[Ref.: #62781]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #62781]

Oxygen tolerance

microaerophile

[Ref.: #30747]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30747]		NaCl		optimum	5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #30747]	arylsulfatase	+	3.1.6.1
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #30747]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #30747]	urease	+	3.5.1.5
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #17617]	4229	-	-	+/-	+/-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #17617]	14117	-	-	-	+	-	+/-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17617]	Sample type/isolated from	bronchoalveolar lavage of a 60-year-old, HIV-negative, female patient suffering from chronic pulmonary disease
[Ref.: #17617]	Geographic location (country and/or sea, region)	Isfahan
[Ref.: #17617]	Country	Iran
[Ref.: #17617]	Country ISO 3 Code	IRN
[Ref.: #17617]	Continent	Asia

[Ref.: #62781]	Sample type/isolated from	Clinical sample
[Ref.: #62781]	Country	Iran
[Ref.: #62781]	Country ISO 3 Code	IRN
[Ref.: #62781]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Bronchoalveolar lavage of a patient suffering from chronic pulmonary disease
[Ref.: #67770]	Country	Iran
[Ref.: #67770]	Country ISO 3 Code	IRN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host	#Human	#Female
#Host Body-Site	#Oral cavity and airways	-
#Host Body Product	#Oral cavity and Airways	#Bronchial wash

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17617]	Pathogenicity (human)	yes, in single cases
[Ref.: #17617]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17617]	Mycobacterium iranicum strain M05 16S ribosomal RNA gene, partial sequence	HQ009482	1450	GenBank ENA	912594 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mycolicibacterium iranicum DSM 45541	GCA_002101705	contig	GenBank ENA	912594 tax ID
[Ref.: #66792]	Mycobacterium iranicum strain DSM 45541	912594.4	wgs	PATRIC	912594 tax ID	*

[Ref.: #67770]

GC-content

66.1 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium iranicum strain DSM 45541 PATRIC: 912594.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.608	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.251	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	83.658	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	59.494	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.9	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86.5	no

Availability in culture collections External links

[Ref.: #17617]

Culture collection no.

DSM 45541, CCUG 62053, JCM 17461

[Ref.: #77749]

SI-ID 396766

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycobacterium iranicum sp. nov., a rapidly growing scotochromogenic species isolated from clinical specimens on three different continents.	Shojaei H, Daley C, Gitti Z, Hashemi A, Heidarieh P, Moore ERB, Naser AD, Russo C, van Ingen J, Tortoli E	Int J Syst Evol Microbiol	10.1099/ijs.0.043562-0	2012	*

References

#17617

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45541

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30747

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27078 (see below)

#62781 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62053

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#77749

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396766.1 )

#27078

IJSEM 1383 2013 ( DOI 10.1099/ijs.0.043562-0 , PubMed 22843713 )

* These data were automatically processed and therefore are not curated

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Mycobacterium iranicum strain DSM 45541

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