Micromonospora sp. (DSM 43170, DSM 43893, KCC A-0126)

Name: Micromonospora sp. (DSM 43170, DSM 43893, KCC A-0126)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7905

Type strain

Strain Designation 336

Culture col. no. DSM 43170 DSM 43893 KCC A-0126 NRRL B-2673 336 4 more

NCBI tax ID(s) 1876

Special Collections DSMZ JCM

History <- KCC (Micromonospora globosa) <- NRRL <- C.J.K. Wang, 336 KCC A-0126 <-- NRRL B-2673 <-- C. J. K. Wang 336.

Links

336 is a mesophilic prokaryote that was isolated from pulp and paper samples.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 265324

DSM 43170,DSM 43893,NRRL B-2673,JCM 3126,CCRC 12663,NCIMB 12755,BCRC 12663,NBIMCC 1634

@ref 20215

Last LPSN update 2025-12-16 09:48:42

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Full scientific name Micromonospora Ørskov 1923 (Approved Lists 1980)

Synonyms (3)

Xiangella
Verrucosispora
Jishengella

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.7
125438		90.5
125438	positive	93.348

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
10838	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10838	N-Z-AMINE-MEDIUM (DSMZ Medium 554)		Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
10838	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.8

Spore formation

@ref	Spore formation	Confidence
125438		92.033

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	#Engineered product

Isolation

@ref	Sample type
10838	pulp and paper samples
67770	Pulp and paper samples

Taxonmaps

69479

Global distribution of 16S sequence X92600 (>99% sequence identity) for Micromonospora from Microbeatlas

Aquatic Samples	188
Soil Samples	470
Animal Samples	133
Plant Samples	13
Total Samples	804

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM71758v1 assembly for Micromonospora globosa NRRL B-2673	contig	GCA_000717585	47863.3	2751185841	47863	54.46

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	M.globosa 16S rRNA gene (isolate DSM 43893)	X92615	1476		47863
10838	M.globosa 16S rRNA gene (isolate DSM 43170)	X92600	1470		47863

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Micromonospora globosa NRRL B-2673
NCBI: GCA_000717585

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	84.60	no
125439	motility	BacteriaNetⓘ	no	82.90	no
125439	gram_stain	BacteriaNetⓘ	positive	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Micromonospora globosa NRRL B-2673
NCBI: GCA_000717585.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.35	no
125438	anaerobic	anaerobicⓘ	no	97.83	no
125438	aerobic	aerobicⓘ	yes	83.04	no
125438	spore-forming	spore-formingⓘ	yes	92.03	no
125438	thermophilic	thermophileⓘ	no	94.50	yes
125438	flagellated	motile2+ⓘ	no	90.50	no

Literature

References

#10838	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43170
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us