Strain identifier
BacDive ID: 7905
Type strain: 
Species: Micromonospora sp.
Strain Designation: 336
Strain history: KCC A-0126 <-- NRRL B-2673 <-- C. J. K. Wang 336.
NCBI tax ID(s): 1876 (species)
version 8.1 (current version)
General
@ref: 10838
BacDive-ID: 7905
DSM-Number: 43170
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Micromonospora sp. 336 is a mesophilic bacterium that was isolated from pulp and paper samples.
NCBI tax id
- NCBI tax id: 1876
- Matching level: species
strain history
| @ref | history |
|---|---|
| 10838 | <- KCC (Micromonospora globosa) <- NRRL <- C.J.K. Wang, 336 |
| 67770 | KCC A-0126 <-- NRRL B-2673 <-- C. J. K. Wang 336. |
doi: 10.13145/bacdive7905.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Micromonospora
- species: Micromonospora sp.
- full scientific name: Micromonospora Ørskov 1923 (Approved Lists 1980)
synonyms
@ref synonym 20215 Verrucosispora 20215 Xiangella 20215 Jishengella
@ref: 10838
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Micromonospora
species: Micromonospora sp.
full scientific name: Micromonospora sp.
strain designation: 336
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 10838 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 10838 | N-Z-AMINE-MEDIUM (DSMZ Medium 554) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium554.pdf |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 10838 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 10838 | pulp and paper samples |
| 67770 | Pulp and paper samples |
isolation source categories
- Cat1: #Engineered
- Cat2: #Industrial
- Cat3: #Engineered product
taxonmaps
- @ref: 69479
- File name: preview.99_1923.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_404;97_1111;98_1509;99_1923&stattab=map
- Last taxonomy: Micromonospora
- 16S sequence: X92600
- Sequence Identity:
- Total samples: 804
- soil counts: 470
- aquatic counts: 188
- animal counts: 133
- plant counts: 13
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | M.globosa 16S rRNA gene (isolate DSM 43893) | X92615 | 1476 | ena | 47863 |
| 10838 | M.globosa 16S rRNA gene (isolate DSM 43170) | X92600 | 1470 | ena | 47863 |
Genome sequences
- @ref: 67770
- description: Micromonospora globosa NRRL B-2673
- accession: GCA_000717585
- assembly level: contig
- database: ncbi
- NCBI tax ID: 47863
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 93.839 | no |
| flagellated | no | 97.9 | no |
| gram-positive | yes | 92.569 | no |
| anaerobic | no | 99.368 | no |
| halophile | no | 94.88 | no |
| spore-forming | yes | 95.484 | no |
| thermophile | no | 98.519 | yes |
| glucose-util | yes | 90.855 | no |
| aerobic | yes | 95.619 | no |
| glucose-ferment | no | 92.606 | no |
External links
@ref: 10838
culture collection no.: DSM 43170, DSM 43893, KCC A-0126, NRRL B-2673, JCM 3126, BCRC 12663, IFM 1277, NCIMB 12755
straininfo link
- @ref: 77339
- straininfo: 265324
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10838 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43170) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43170 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 77339 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID265324.1 | StrainInfo: A central database for resolving microbial strain identifiers |