Micromonospora sp. (DSM 45687, S 2903)

Name: Micromonospora sp. (DSM 45687, S 2903)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159009

Type strain

Strain Designation S 2903

Culture col. no. DSM 45687 S 2903

NCBI tax ID(s) 1876

Special Collections DSMZ

Links

S 2903 is a mesophilic prokaryote that was isolated from marine sediment.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 402577

DSM 45687

@ref 20215

Last LPSN update 2025-12-16 10:08:09

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Full scientific name Micromonospora Ørskov 1923 (Approved Lists 1980)

Synonyms (3)

Xiangella
Verrucosispora
Jishengella

Morphology

Cell morphology

@ref	Motility	Confidence
125438		90.567
125438		91.393
125439		99.8

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65832	N-Z-AMINE-MEDIUM (DSMZ Medium 554)		Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
65832	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65832	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65832	marine sediment	Karadeniz	Turkey	TUR	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
66792	ASM317674v1 assembly for Micromonospora globispora S2903	contig	GCA_003176745	1128668.3	2866311706	1450148

Genome browser: GCA_003176745

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65832	Micromonospora sp. S2903 16S ribosomal RNA gene, partial sequence	JN989305	1460		1450148

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Micromonospora sp. S2903
PATRIC: 1128668.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.80	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	motility	BacteriaNetⓘ	no	86.40	no
125439	spore_formation	BacteriaNetⓘ	yes	81.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Micromonospora sp. S2903
PATRIC: 1128668.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.39	no
125438	anaerobic	anaerobicⓘ	no	90.87	no
125438	spore-forming	spore-formingⓘ	yes	87.56	no
125438	aerobic	aerobicⓘ	yes	85.57	no
125438	thermophilic	thermophileⓘ	no	94.50	no
125438	flagellated	motile2+ⓘ	no	90.57	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65832	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45687
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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