Name: Micromonospora carbonacea DSM 43815
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7884

Type strain:

Species: Micromonospora carbonacea

Culture col. no.: DSM 43815, ATCC 27115, IFO 14107, JCM 3168, KCC A-0168, NBRC 14107, NRRL 2997, BCRC 12628, IFM 1256, IMSNU 20082, KCTC 9547, MTCC 1054, NCIMB 12664

Strain history: KCC A-0168 <-- NRRL 2997 <-- Schering Corp..

NCBI tax ID(s): 47853 (species)

SI-ID 38818

ATCC 27115, NRRL 2997, DSM 43815, JCM 3168, IFO 14107, CCRC 12628, NCIMB 12664, KCTC 9547, NBRC 14107, BCRC 12628

Special Collections

Other strains from Micromonospora carbonacea

Section

Micromonospora carbonacea DSM 43815 is a spore-forming bacterium that was isolated from soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Micromonospora*
	Species	**Micromonospora carbonacea**
	Full Scientific Name (LPSN)	Micromonospora carbonacea Luedemann and Brodsky 1965 (Approved Lists 1980)

Synonym

Micromonospora carbonacea subsp. aurantiaca

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %91.316

[Ref.: #69480]	Motility	no Confidence in %91.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11288]

Culture medium

YEAST-STARCH-AGAR(B) (DSMZ Medium 656)

[Ref.: #11288]

Culture medium growth

[Ref.: #11288]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #11288]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #11288]

Culture medium growth

[Ref.: #11288]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #11288]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #11288]

Culture medium growth

[Ref.: #11288]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #11288]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %93.696
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #11288]	Name of produced compound	everninomicins
[Ref.: #11288]	Name of produced compound	restriction endonuclease McaAI
[Ref.: #20216]	Name of produced compound	Everninimycin

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₆)

	Metabolite production	Metabolite	Production
[Ref.: #67770]		everninomicin ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11288]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11288]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #11288]	M.carbonacea 16S rRNA gene (isolate DSM 43815)	X92606	1459	GenBank ENA	47853 tax ID
[Ref.: #20218]	Micromonospora carbonacea subsp. aurantiaca 16S-23S ribosomal RNA spacer region	AF004001	385	GenBank ENA	47853 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Micromonospora carbonacea DSM 43815	GCA_014205165	contig	GenBank ENA	47853 tax ID	*
[Ref.: #66792]	Micromonospora carbonacea strain DSM 43815	47853.9	wgs	PATRIC	47853 tax ID	*
[Ref.: #66792]	Micromonospora carbonacea strain aurantiaca	47853.8	complete	PATRIC	47853 tax ID	*
[Ref.: #66792]	Micromonospora carbonacea aurantiaca DSM 43815	2870855028	draft	JGI IMG/M	47853 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Micromonospora carbonacea strain aurantiaca PATRIC: 47853.8
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Micromonospora carbonacea strain aurantiaca PATRIC: 47853.8
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.316	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.931	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	93.696	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.843	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.478	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91.5	no

Availability in culture collections External links

[Ref.: #11288]

Culture collection no.

DSM 43815, ATCC 27115, IFO 14107, JCM 3168, KCC A-0168, NBRC 14107, NRRL 2997, BCRC 12628, IFM 1256, IMSNU 20082, KCTC 9547, MTCC 1054, NCIMB 12664

[Ref.: #77320]

SI-ID 38818

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Micromonospora haikouensis sp. nov., isolated from mangrove soil.	Xie QY, Qu Z, Lin HP, Li L, Hong K	Antonie Van Leeuwenhoek	10.1007/s10482-011-9682-y	2012	*

References

#11288

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43815

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77320

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38818.1 )

* These data were automatically processed and therefore are not curated

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Micromonospora carbonacea strain aurantiaca

Micromonospora carbonacea strain aurantiaca

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