Micromonospora carbonacea subsp. carbonacea (DSM 43168, ATCC 27114, JCM 3139)

Name: Micromonospora carbonacea subsp. carbonacea (DSM 43168, ATCC 27114, JCM 3139)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7883

Type strain

Culture col. no. DSM 43168 ATCC 27114 JCM 3139 KCC A-0139 NRRL 2972 11 more

NCBI tax ID(s) 47853 3454473

Special Collections DSMZ JCM KCTC JMRC

History DSMZ <- KCC <- NRRL <- Schering AG <- A.Woyciesjes JCM <-- KCC A-0139 <-- NRRL 2972 <-- Schering Corp. <-- A. Woyciesjes.

Links

Micromonospora carbonacea subsp. carbonacea DSM 43168 is a bacterium that was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 38817

ATCC 27114,NRRL 2972,JCM 3139,DSM 43168,CCRC 12587,IFO 14108,NCIMB 12663,CBS 469.75,AS 4.1077,KCTC 1053,NBRC 14108,BCRC 12587,CGMCC 4.1077

@ref 20215

Last LPSN update 2026-05-29 08:26:45

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Species Micromonospora carbonacea subsp. carbonacea

Full scientific name Micromonospora carbonacea subsp. carbonacea Luedemann and Brodsky 1965 (Approved Lists 1980)

BacDive ID	Other strains from **Micromonospora carbonacea subsp. carbonacea** (1)	Type strain
7884	M. carbonacea subsp. carbonacea DSM 43815, ATCC 27115, IFO 14107, JCM 3168, ...

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	91.5
125438	91.377	positive
125439	95.915
125439	99.758	positive

Multimedia

@ref:	10836
multimedia content:	DSM_43168.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_43168.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
10836	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10836	CZAPEK PEPTONE AGAR (DSMZ Medium 83)		Medium recipe at MediaDive	Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
10836	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	98.454

Spore formation

@ref	Spore formation	Confidence
125438		93.187
125439		95.621

Compound production

@ref	Compound
10836	everninomicins
20216	Everninimycin

Observation

67770

Observationquinones: MK-9(H₄), MK-9(H₆)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
67770	29581 ChEBI	everninomicin

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
10836	soil	Olean, New York	USA	USA	North America
67770	Soil	Olean, NY	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10836	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2622736592 annotated assembly for Micromonospora carbonacea DSM 43168	scaffold	GCA_900091535	47853.7	2622736592	47853	63.9

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Micromonospora carbonacea subsp. carbonacea 16S-23S ribosomal RNA spacer region	AF004000	394		47853
10836	Micromonospora carbonacea partial 16S rRNA gene, type strain DSM 43168T	X92599	1476		47853

GC content

@ref	GC-content (mol%)	Method
67770	73.71	genome sequence analysis
67770	73.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2622736592 annotated assembly for Micromonospora carbonacea DSM 43168
NCBI: GCA_900091535

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	98.45	no
125439	gram_stain	BacteriaNetⓘ	positive	99.76	no
125439	motility	BacteriaNetⓘ	no	95.92	no
125439	spore_formation	BacteriaNetⓘ	yes	95.62	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Micromonospora carbonacea strain DSM 43168
PATRIC: 47853.7

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.38	no
125438	anaerobic	anaerobicⓘ	no	90.43	no
125438	spore-forming	spore-formingⓘ	yes	93.19	no
125438	aerobic	aerobicⓘ	yes	86.25	no
125438	thermophilic	thermophileⓘ	no	91.98	no
125438	flagellated	motile2+ⓘ	no	91.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Metabolomic and genomic insights into Micromonospora carbonacea subsp. caeruleus for anti-colorectal compound.	Kongsaya T, Emthomya N, Ngamcharungchit C, Aroonsri A, Uawisetwathana U, Pruksatrakul T, Euanorasetr J, Intra B.	Appl Microbiol Biotechnol	10.1007/s00253-025-13427-z	2025
Metabolism	Biosynthesis of the Thiopeptins and Identification of an F₄₂₀H₂-Dependent Dehydropiperidine Reductase.	Ichikawa H, Bashiri G, Kelly WL.	J Am Chem Soc	10.1021/jacs.8b04238	2018
	Comparative Genomic Analysis of Soil Dwelling Bacteria Utilizing a Combinational Codon Usage and Molecular Phylogenetic Approach Accentuating on Key Housekeeping Genes.	Saha J, Saha BK, Pal Sarkar M, Roy V, Mandal P, Pal A.	Front Microbiol	10.3389/fmicb.2019.02896	2019
	Distribution of thiols in microorganisms: mycothiol is a major thiol in most actinomycetes.	Newton GL, Arnold K, Price MS, Sherrill C, Delcardayre SB, Aharonowitz Y, Cohen G, Davies J, Fahey RC, Davis C.	J Bacteriol	10.1128/jb.178.7.1990-1995.1996	1996
Metabolism	Use of direct-infusion electrospray mass spectrometry to guide empirical development of improved conditions for expression of secondary metabolites from actinomycetes.	Zahn JA, Higgs RE, Hilton MD.	Appl Environ Microbiol	10.1128/aem.67.1.377-386.2001	2001
Phylogeny	Micromonospora oryzae sp. nov., isolated from roots of upland rice.	Kittiwongwattana C, Thanaboripat D, Laosinwattana C, Koohakan P, Parinthawong N, Thawai C	Int J Syst Evol Microbiol	10.1099/ijsem.0.000500	2015
Phylogeny	Two new species of the genus Micromonospora: Micromonospora palomenae sp. nov. and Micromonospora harpali sp. nov. isolated from the insects.	Fang B, Liu C, Guan X, Song J, Zhao J, Liu H, Li C, Ning W, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0472-9	2015

References

#10836	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43168
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Micromonospora carbonacea subsp. carbonacea (DSM 43168, ATCC 27114, JCM 3139)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Observation

Metabolite production

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900091535

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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