Name: Micromonospora carbonacea DSM 43168
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7883

Type strain:

Species: Micromonospora carbonacea

Culture col. no.: DSM 43168, ATCC 27114, JCM 3139, KCC A-0139, NRRL 2972, BCRC 12587, CBS 469.75, CGMCC 4.1077, IFO 14108, IMSNU 20081, IMSNU 21287, KCTC 1053, NBRC 14108, NCIMB 12663

Strain history: KCC A-0139 <-- NRRL 2972 <-- Schering Corp. <-- A. Woyciesjes.

NCBI tax ID(s): 47853 (species)

SI-ID 38817

ATCC 27114, NRRL 2972, JCM 3139, DSM 43168, CCRC 12587, IFO 14108, NCIMB 12663, CBS 469.75, AS 4.1077, KCTC 1053, NBRC 14108, BCRC 12587, CGMCC 4.1077

Other strains from Micromonospora carbonacea

M. carbonacea ST033317(HKI),

Section

Micromonospora carbonacea DSM 43168 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Micromonospora*
	Species	**Micromonospora carbonacea**
	Full Scientific Name (LPSN)	Micromonospora carbonacea Luedemann and Brodsky 1965 (Approved Lists 1980)

Synonym

Micromonospora carbonacea subsp. aurantiaca

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #10836]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #10836]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #10836]	Name of produced compound	everninomicins
[Ref.: #20216]	Name of produced compound	Everninimycin

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Observation

quinones: MK-9(H₄), MK-9(H₆)

	Metabolite production	Metabolite	Production
[Ref.: #67770]		everninomicin ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10836]	Sample type/isolated from	soil
[Ref.: #10836]	Geographic location (country and/or sea, region)	Olean, New York
[Ref.: #10836]	Country	USA
[Ref.: #10836]	Country ISO 3 Code	USA
[Ref.: #10836]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Olean, NY
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #10836]	Micromonospora carbonacea partial 16S rRNA gene, type strain DSM 43168T	X92599	1476	ENA	47853 tax ID
[Ref.: #20218]	Micromonospora carbonacea subsp. carbonacea 16S-23S ribosomal RNA spacer region	AF004000	394	ENA	47853 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Micromonospora carbonacea DSM 43168	GCA_900091535	scaffold	GenBank	47853 tax ID
[Ref.: #66792]	Micromonospora carbonacea strain DSM 43168	47853.7	wgs	PATRIC	47853 tax ID	*
[Ref.: #66792]	Micromonospora carbonacea DSM 43168	2622736592	draft	JGI IMG/M	47853 tax ID	*

[Ref.: #67770]	GC-content	73.71 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	73.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Micromonospora carbonacea DSM 43168 NCBI: GCA_900091535.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Micromonospora carbonacea strain DSM 43168 PATRIC: 47853.7
[Ref.: #69480]	gram-positive	yes	88.908	no
[Ref.: #69480]	anaerobic	no	99.413	no
[Ref.: #69480]	halophile	no	94.661	no
[Ref.: #69480]	spore-forming	yes	94.995	no
[Ref.: #69480]	glucose-util	yes	88.849	no
[Ref.: #69480]	aerobic	yes	95.598	no
[Ref.: #69480]	thermophile	no	98.819	yes
[Ref.: #69480]	motile	no	94.651	no
[Ref.: #69480]	flagellated	no	97.57	no
[Ref.: #69480]	glucose-ferment	no	91.569	no

Availability in culture collections External links

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Culture collection no.

DSM 43168, ATCC 27114, JCM 3139, KCC A-0139, NRRL 2972, BCRC 12587, CBS 469.75, CGMCC 4.1077, IFO 14108, IMSNU 20081, IMSNU 21287, KCTC 1053, NBRC 14108, NCIMB 12663

[Ref.: #77319]

SI-ID 38817

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Micromonospora oryzae sp. nov., isolated from roots of upland rice.	Kittiwongwattana C, Thanaboripat D, Laosinwattana C, Koohakan P, Parinthawong N, Thawai C	Int J Syst Evol Microbiol	10.1099/ijsem.0.000500	2015	*
Phylogeny	Two new species of the genus Micromonospora: Micromonospora palomenae sp. nov. and Micromonospora harpali sp. nov. isolated from the insects.	Fang B, Liu C, Guan X, Song J, Zhao J, Liu H, Li C, Ning W, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0472-9	2015	*

References

#10836

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43168

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77319

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38817.1 )

* These data were automatically processed and therefore are not curated

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Micromonospora carbonacea DSM 43168

Micromonospora carbonacea strain DSM 43168

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