Catellatospora coxensis (DSM 44901, JCM 12951, NBRC 107359)

Name: Catellatospora coxensis (DSM 44901, JCM 12951, NBRC 107359)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7858

Type strain

Strain Designation 2-29(17)

Culture col. no. DSM 44901 JCM 12951 NBRC 107359 2-29(17) CIP 109163

NCBI tax ID(s) 310354

Special Collections DSMZ JCM CIP Literature strains

History DSMZ <- JCM <- I. Ara JCM <-- I. Ara 2-29(17).

Links

Catellatospora coxensis 2-29 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from sandy soil.

spore-forming Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 289972

NBRC-107359,DSM 44901,JCM 12951,CIP 109163

@ref 20215

Last LPSN update 2026-05-29 08:26:44

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Catellatospora

Species Catellatospora coxensis

Full scientific name Catellatospora coxensis Ara and Kudo 2006

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
31592	positive	rod-shaped
125438			90.5
125439			90.737
125439	positive		99.575

Pigmentation

31592

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
12185	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
12185	YEAST-STARCH-AGAR(B) (DSMZ Medium 656)	Medium recipe at MediaDive	Name: YEAST-STARCH-AGAR(B) (DSMZ Medium 656) Composition: Starch 15.0 g/l Agar 15.0 g/l Yeast extract 4.0 g/l MgSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l Distilled water
12185	YEAST STARCH AGAR (A) (DSMZ Medium 1027)	Medium recipe at MediaDive	Name: YEAST STARCH AGAR (A) (DSMZ Medium 1027) Composition: Agar 15.0 g/l Starch 10.0 g/l Yeast extract 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
12185	positive	growth	28
31592	positive	growth	20-30
31592	positive	optimum	20-30
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
31592	positive	optimum	06-09
31592	positive	growth	06-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31592	aerobe
125439	obligate aerobe	99.555

Spore formation

@ref	Spore formation	Confidence
31592
125438		91.577

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31592	NaCl	positive	growth	1 %
31592	NaCl	positive	optimum	1 %

Observation

@ref	Observation
31592	aggregates in chains
67770	quinones: MK-9(H₄), MK-9(H₆), MK-9(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31592	22599 ChEBI	arabinose	+	carbon source
31592	28260 ChEBI	galactose	+	carbon source
31592	17234 ChEBI	glucose	+	carbon source
31592	17754 ChEBI	glycerol	+	carbon source
31592	17716 ChEBI	lactose	+	carbon source
31592	17306 ChEBI	maltose	+	carbon source
31592	37684 ChEBI	mannose	+	carbon source
31592	28053 ChEBI	melibiose	+	carbon source
31592	26546 ChEBI	rhamnose	+	carbon source
31592	33942 ChEBI	ribose	+	carbon source
31592	17992 ChEBI	sucrose	+	carbon source
31592	27082 ChEBI	trehalose	+	carbon source
31592	18222 ChEBI	xylose	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
12185	sandy soil	Chokoria, Cox's Bazar	Bangladesh	BGD	Asia
67770	Sandy soil at a forest-side waterfall	Chokoria, Cox's Bazar	Bangladesh	BGD	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB200232 (>99% sequence identity) for Catellatospora from Microbeatlas

Aquatic Samples	89
Soil Samples	939
Animal Samples	57
Plant Samples	287
Total Samples	1372

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12185	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1686263v1 assembly for Catellatospora coxensis NBRC 107359	contig	GCA_016862635	310354.3	3001102789	310354	29.63
124043	ASM4267512v1 assembly for Catellatospora coxensis JCM 12951	contig	GCA_042675125			310354	3.13
124043	ASM3952807v1 assembly for Catellatospora coxensis JCM 12951	scaffold	GCA_039528075			310354	3.07

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
12185	Catellatospora coxensis gene for 16S rRNA, partial sequence	AB200232	1508		310354

GC content

@ref	GC-content (mol%)	Method
31592	71
67770	71	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1686263v1 assembly for Catellatospora coxensis NBRC 107359
BV-BRC: 310354.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.56	no
125439	gram_stain	BacteriaNetⓘ	positive	99.58	no
125439	motility	BacteriaNetⓘ	no	90.74	no
125439	spore_formation	BacteriaNetⓘ	yes	81.78	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Catellatospora coxensis strain NBRC 107359
PATRIC: 310354.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.82	no
125438	anaerobic	anaerobicⓘ	no	95.78	yes
125438	spore-forming	spore-formingⓘ	yes	91.58	yes
125438	aerobic	aerobicⓘ	yes	87.14	yes
125438	thermophilic	thermophileⓘ	no	94.50	no
125438	flagellated	motile2+ⓘ	no	90.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Catellatospora vulcania sp. nov. and Catellatospora paridis sp. nov., two novel actinobacteria isolated from volcanic sediment and the rhizosphere of Paris polyphylla.	Jia F, Guo S, Shen Y, Gao M, Liu C, Zhou S, Li J, Guan X, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0608-y	2015
Phylogeny	Catellatospora aurea sp. nov., a novel actinomycete isolated from soil.	Liu C, Zhao J, Guan X, Li L, Li W, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-014-0287-0	2014
Phylogeny	Three novel species of the genus Catellatospora, Catellatospora chokoriensis sp. nov., Catellatospora coxensis sp. nov. and Catellatospora bangladeshensis sp. nov., and transfer of Catellatospora citrea subsp. methionotrophica Asano and Kawamoto 1988 to Catellatospora methionotrophica sp. nov., comb. nov.	Ara I, Kudo T	Int J Syst Evol Microbiol	10.1099/ijs.0.63862-0	2006

References

#12185	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44901
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27881	IJSEM 393 2006 ( DOI 10.1099/ijs.0.63862-0 , PubMed 16449446 )
#31592	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27881
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Catellatospora coxensis (DSM 44901, JCM 12951, NBRC 107359)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016862635

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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