Name: Catellatospora coxensis 2-29(17)
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7858

Type strain:

Species: Catellatospora coxensis

Strain Designation: 2-29(17)

Culture col. no.: DSM 44901, JCM 12951, NBRC 107359, CIP 109163

Strain history: I. Ara 2-29(17).

NCBI tax ID(s): 310354 (species)

SI-ID 289972

DSM 44901, JCM 12951, CIP 109163

Special Collections

Section

Catellatospora coxensis 2-29 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from sandy soil.

Gram-positive
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Catellatospora*
	Species	**Catellatospora coxensis**
	Full Scientific Name (LPSN)	Catellatospora coxensis Ara and Kudo 2006

Information on morphological and physiological properties Morphology

[Ref.: #31592]	Gram stain	positive

[Ref.: #31592]	Cell shape	rod-shaped

[Ref.: #31592]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.5

[Ref.: #31592]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12185]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #12185]

Culture medium growth

[Ref.: #12185]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12185]

Culture medium composition

expand / minimize

[Ref.: #12185]

Culture medium

YEAST-STARCH-AGAR(B) (DSMZ Medium 656)

[Ref.: #12185]

Culture medium growth

[Ref.: #12185]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12185]

Culture medium composition

expand / minimize

[Ref.: #12185]

Culture medium

YEAST STARCH AGAR (A) (DSMZ Medium 1027)

[Ref.: #12185]

Culture medium growth

[Ref.: #12185]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12185]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12185]	growth	28 °C
[Ref.: #31592]	growth	20-30 °C
[Ref.: #31592]	optimum	20-30 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #31592]			optimum	06-09
[Ref.: #31592]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31592]

Oxygen tolerance

aerobe

[Ref.: #31592]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %91.577
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31592]		NaCl		growth	1	%
[Ref.: #31592]		NaCl		optimum	1	%

[Ref.: #31592]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₄), MK-9(H₆), MK-9(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31592]	arabinose ChEBI	+	carbon source
[Ref.: #31592]	galactose ChEBI	+	carbon source
[Ref.: #31592]	glucose ChEBI	+	carbon source
[Ref.: #31592]	glycerol ChEBI	+	carbon source
[Ref.: #31592]	lactose ChEBI	+	carbon source
[Ref.: #31592]	maltose ChEBI	+	carbon source
[Ref.: #31592]	mannose ChEBI	+	carbon source
[Ref.: #31592]	melibiose ChEBI	+	carbon source
[Ref.: #31592]	rhamnose ChEBI	+	carbon source
[Ref.: #31592]	ribose ChEBI	+	carbon source
[Ref.: #31592]	sucrose ChEBI	+	carbon source
[Ref.: #31592]	trehalose ChEBI	+	carbon source
[Ref.: #31592]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12185]	Sample type/isolated from	sandy soil
[Ref.: #12185]	Geographic location (country and/or sea, region)	Chokoria, Cox's Bazar
[Ref.: #12185]	Country	Bangladesh
[Ref.: #12185]	Country ISO 3 Code	BGD
[Ref.: #12185]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sandy soil at a forest-side waterfall
[Ref.: #67770]	Geographic location (country and/or sea, region)	Chokoria, Cox's Bazar
[Ref.: #67770]	Country	Bangladesh
[Ref.: #67770]	Country ISO 3 Code	BGD
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB200232 (>99% sequence identity) for Catellatospora from Microbeatlas

Aquatic Samples	89
Soil Samples	939
Animal Samples	57
Plant Samples	287
Total Samples	1372

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12185]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12185]	Catellatospora coxensis gene for 16S rRNA, partial sequence	AB200232	1508	GenBank ENA	310354 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Catellatospora coxensis NBRC 107359	GCA_016862635	contig	GenBank ENA	310354 tax ID	*
[Ref.: #66792]	Catellatospora coxensis strain NBRC 107359	310354.3	wgs	PATRIC	310354 tax ID	*

[Ref.: #31592]	GC-content	71 mol%
[Ref.: #67770]	GC-content	71 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Catellatospora coxensis strain NBRC 107359 PATRIC: 310354.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Catellatospora coxensis strain NBRC 107359 PATRIC: 310354.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.816	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.775	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	91.577	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.144	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.5	yes

Availability in culture collections External links

[Ref.: #12185]

Culture collection no.

DSM 44901, JCM 12951, NBRC 107359, CIP 109163

[Ref.: #77295]

SI-ID 289972

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Catellatospora vulcania sp. nov. and Catellatospora paridis sp. nov., two novel actinobacteria isolated from volcanic sediment and the rhizosphere of Paris polyphylla.	Jia F, Guo S, Shen Y, Gao M, Liu C, Zhou S, Li J, Guan X, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0608-y	2015	*
Phylogeny	Catellatospora aurea sp. nov., a novel actinomycete isolated from soil.	Liu C, Zhao J, Guan X, Li L, Li W, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-014-0287-0	2014	*
Phylogeny	Three novel species of the genus Catellatospora, Catellatospora chokoriensis sp. nov., Catellatospora coxensis sp. nov. and Catellatospora bangladeshensis sp. nov., and transfer of Catellatospora citrea subsp. methionotrophica Asano and Kawamoto 1988 to Catellatospora methionotrophica sp. nov., comb. nov.	Ara I, Kudo T	Int J Syst Evol Microbiol	10.1099/ijs.0.63862-0	2006	*

References

#12185

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44901

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31592

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27881 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77295

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID289972.1 )

#27881

IJSEM 393 2006 ( DOI 10.1099/ijs.0.63862-0 , PubMed 16449446 )

* These data were automatically processed and therefore are not curated

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Catellatospora coxensis strain NBRC 107359

Catellatospora coxensis strain NBRC 107359

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