Name: Catellatospora chokoriensis 2-25(1)
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7857

Type strain:

Species: Catellatospora chokoriensis

Strain Designation: 2-25(1)

Culture col. no.: DSM 44900, JCM 12950, NBRC 107358, CGMCC 4.5499, CIP 109162

Strain history: I. Ara 2-25(1).

NCBI tax ID(s): 310353 (species)

Section

Catellatospora chokoriensis 2-25 is an aerobe, spore-forming, mesophilic bacterium that was isolated from sandy soil.

Gram-positive
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Catellatospora*
	Species	**Catellatospora chokoriensis**
	Full Scientific Name (LPSN)	Catellatospora chokoriensis Ara and Kudo 2006

Information on morphological and physiological properties Morphology

[Ref.: #31592]	Gram stain	positive
[Ref.: #31592]	Cell shape	rod-shaped
[Ref.: #31592]	Motility	no

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.632

[Ref.: #20138]	Colony color	Dahlia yellow (1033)
[Ref.: #20138]	Incubation period	10-14 days
[Ref.: #20138]	Cultivation medium used	ISP 2

[Ref.: #20138]	Colony color	Dahlia yellow (1033)
[Ref.: #20138]	Incubation period	10-14 days
[Ref.: #20138]	Cultivation medium used	ISP 3

[Ref.: #20138]	Colony color	Dahlia yellow (1033)
[Ref.: #20138]	Incubation period	10-14 days
[Ref.: #20138]	Cultivation medium used	ISP 4

[Ref.: #20138]	Colony color	Dahlia yellow (1033)
[Ref.: #20138]	Incubation period	10-14 days
[Ref.: #20138]	Cultivation medium used	ISP 5

[Ref.: #20138]	Colony color	Dahlia yellow (1033)
[Ref.: #20138]	Incubation period	10-14 days
[Ref.: #20138]	Cultivation medium used	ISP 6

[Ref.: #20138]	Colony color	Dahlia yellow (1033)
[Ref.: #20138]	Incubation period	10-14 days
[Ref.: #20138]	Cultivation medium used	ISP 7

[Ref.: #31592]

Pigment production

yes

[Ref.: #20138]	Multicellular complex forming ability	no
[Ref.: #20138]	Medium Name (multicellularity)	ISP 2

[Ref.: #20138]	Multicellular complex forming ability	no
[Ref.: #20138]	Medium Name (multicellularity)	ISP 3

[Ref.: #20138]	Multicellular complex forming ability	no
[Ref.: #20138]	Medium Name (multicellularity)	ISP 4

[Ref.: #20138]	Multicellular complex forming ability	no
[Ref.: #20138]	Medium Name (multicellularity)	ISP 5

[Ref.: #20138]	Multicellular complex forming ability	no
[Ref.: #20138]	Medium Name (multicellularity)	ISP 6

[Ref.: #20138]	Multicellular complex forming ability	no
[Ref.: #20138]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12184]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

YEAST-STARCH-AGAR(B) (DSMZ Medium 656)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 7

[Ref.: #20138]

Culture medium growth

[Ref.: #20138]

Culture medium composition

expand / minimize

[Ref.: #12184]

Culture medium

YEAST STARCH AGAR (A) (DSMZ Medium 1027)

[Ref.: #12184]

Culture medium growth

[Ref.: #12184]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12184]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12184]	growth	28 °C
[Ref.: #20138]	optimum	28 °C
[Ref.: #31592]	growth	15-30 °C
[Ref.: #31592]	optimum	15-30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #12184]	Temperature range	mesophilic
[Ref.: #20138]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31592]			optimum	06-09
[Ref.: #31592]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31592]

Oxygen tolerance

aerobe

[Ref.: #31592]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #31592]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₄), MK-9(H₆), MK-9(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #20138]	arabinose ChEBI	+
[Ref.: #31592]	arabinose ChEBI	+	carbon source
[Ref.: #20138]	cellulose ChEBI	+
[Ref.: #20138]	fructose ChEBI	-
[Ref.: #31592]	galactose ChEBI	+	carbon source
[Ref.: #20138]	glucose ChEBI	+
[Ref.: #31592]	glucose ChEBI	+	carbon source
[Ref.: #31592]	maltose ChEBI	+	carbon source
[Ref.: #20138]	mannitol ChEBI	-
[Ref.: #31592]	mannose ChEBI	+	carbon source
[Ref.: #31592]	melibiose ChEBI	+	carbon source
[Ref.: #20138]	myo-inositol ChEBI	-
[Ref.: #20138]	raffinose ChEBI	-
[Ref.: #20138]	rhamnose ChEBI	-
[Ref.: #31592]	salicin ChEBI	+	carbon source
[Ref.: #20138]	sucrose ChEBI	+
[Ref.: #31592]	sucrose ChEBI	+	carbon source
[Ref.: #31592]	trehalose ChEBI	+	carbon source
[Ref.: #20138]	xylose ChEBI	-
[Ref.: #31592]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #20138]	919	not determinedn.d.	+	+	+	-	+	+	-	+	+	+	+	+	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12184]	Sample type/isolated from	sandy soil
[Ref.: #12184]	Geographic location (country and/or sea, region)	Chokoria, Cox's Bazar
[Ref.: #12184]	Country	Bangladesh
[Ref.: #12184]	Country ISO 3 Code	BGD
[Ref.: #12184]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sandy soil at a forest-side waterfall
[Ref.: #67770]	Geographic location (country and/or sea, region)	Chokoria, Cox's Bazar
[Ref.: #67770]	Country	Bangladesh
[Ref.: #67770]	Country ISO 3 Code	BGD
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB200231 (>99% sequence identity) for Catellatospora from Microbeatlas

Aquatic Samples	89
Soil Samples	939
Animal Samples	57
Plant Samples	287
Total Samples	1372

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12184]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #20138]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12184]	Catellatospora chokoriensis gene for 16S rRNA, partial sequence	AB200231	1481	ENA	310353 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Catellatospora chokoriensis 2-25(1)	GCA_011297315	scaffold	GenBank	310353 tax ID
[Ref.: #66792]	Catellatospora chokoriensis NBRC 107358	GCA_016862595	contig	GenBank	310353 tax ID	*
[Ref.: #66792]	Catellatospora chokoriensis strain NBRC 107358	310353.4	wgs	PATRIC	310353 tax ID	*

[Ref.: #31592]	GC-content	71 mol%
[Ref.: #67770]	GC-content	71 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Catellatospora chokoriensis 2-25(1) NCBI: GCA_011297315.1
[Ref.: #69480]	spore-forming	yes	100	no
[Ref.: #69480]	anaerobic	no	99.656	yes
[Ref.: #69480]	gram-positive	yes	100	yes
[Ref.: #69480]	thermophile	no	99.883	yes
[Ref.: #69480]	motile	no	93.632	yes

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Catellatospora chokoriensis 2-25(1) NCBI: GCA_011297315.1
[Ref.: #69481]	spore-forming	yes	100	no

Availability in culture collections External links

[Ref.: #12184]

Culture collection no.

DSM 44900, JCM 12950, NBRC 107358, CGMCC 4.5499, CIP 109162

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Catellatospora vulcania sp. nov. and Catellatospora paridis sp. nov., two novel actinobacteria isolated from volcanic sediment and the rhizosphere of Paris polyphylla.	Jia F, Guo S, Shen Y, Gao M, Liu C, Zhou S, Li J, Guan X, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0608-y	2015	*
Phylogeny	Three novel species of the genus Catellatospora, Catellatospora chokoriensis sp. nov., Catellatospora coxensis sp. nov. and Catellatospora bangladeshensis sp. nov., and transfer of Catellatospora citrea subsp. methionotrophica Asano and Kawamoto 1988 to Catellatospora methionotrophica sp. nov., comb. nov.	Ara I, Kudo T	Int J Syst Evol Microbiol	10.1099/ijs.0.63862-0	2006	*

References

#12184

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44900

#20138

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31592

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27881 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#27881

IJSEM 393 2006 ( DOI 10.1099/ijs.0.63862-0 , PubMed 16449446 )

* These data were automatically processed and therefore are not curated

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