Catellatospora chokoriensis (DSM 44900, JCM 12950, NBRC 107358)

Name: Catellatospora chokoriensis (DSM 44900, JCM 12950, NBRC 107358)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7857

Type strain

Strain Designation 2-25(1)

Culture col. no. DSM 44900 JCM 12950 NBRC 107358 2-25(1) CIP 109162 1 more

NCBI tax ID(s) 310353

Special Collections DSMZ JCM CIP Wink compendium Literature strains

History DSMZ <- JCM <- I. Ara JCM <-- I. Ara 2-25(1).

Links

Catellatospora chokoriensis 2-25 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from sandy soil.

spore-forming Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 289971

NBRC-107358,DSM 44900,JCM 12950,CIP 109162

@ref 20215

Last LPSN update 2026-05-29 08:26:44

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Catellatospora

Species Catellatospora chokoriensis

Full scientific name Catellatospora chokoriensis Ara and Kudo 2006

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
31592	positive	rod-shaped
125439	positive			98.725

Colony morphology

@ref	Colony color	Incubation period	Medium used
20138	Dahlia yellow (1033)	10-14 days	ISP 2
20138	Dahlia yellow (1033)	10-14 days	ISP 3
20138	Dahlia yellow (1033)	10-14 days	ISP 4
20138	Dahlia yellow (1033)	10-14 days	ISP 5
20138	Dahlia yellow (1033)	10-14 days	ISP 6
20138	Dahlia yellow (1033)	10-14 days	ISP 7

Multicellular morphology

@ref	Forms multicellular complex	Medium name
20138		ISP 2
20138		ISP 3
20138		ISP 4
20138		ISP 5
20138		ISP 6
20138		ISP 7

Pigmentation

31592

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
12184	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
12184	YEAST-STARCH-AGAR(B) (DSMZ Medium 656)	Medium recipe at MediaDive	Name: YEAST-STARCH-AGAR(B) (DSMZ Medium 656) Composition: Starch 15.0 g/l Agar 15.0 g/l Yeast extract 4.0 g/l MgSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l Distilled water
20138	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
20138	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
20138	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
20138	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
20138	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
20138	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
12184	YEAST STARCH AGAR (A) (DSMZ Medium 1027)	Medium recipe at MediaDive	Name: YEAST STARCH AGAR (A) (DSMZ Medium 1027) Composition: Agar 15.0 g/l Starch 10.0 g/l Yeast extract 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
12184	positive	growth	28
20138	positive	optimum	28
31592	positive	growth	15-30
31592	positive	optimum	15-30
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
31592	positive	optimum	06-09
31592	positive	growth	06-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31592	aerobe
125439	obligate aerobe	98.784

Spore formation

@ref	Spore formation	Confidence
31592
125438		91.173

Observation

@ref	Observation
31592	aggregates in chains
67770	quinones: MK-9(H₄), MK-9(H₆), MK-9(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
20138	22599 ChEBI	arabinose	+
31592	22599 ChEBI	arabinose	+	carbon source
20138	62968 ChEBI	cellulose	+
20138	28757 ChEBI	fructose	-
31592	28260 ChEBI	galactose	+	carbon source
20138	17234 ChEBI	glucose	+
31592	17234 ChEBI	glucose	+	carbon source
31592	17306 ChEBI	maltose	+	carbon source
20138	29864 ChEBI	mannitol	-
31592	37684 ChEBI	mannose	+	carbon source
31592	28053 ChEBI	melibiose	+	carbon source
20138	17268 ChEBI	myo-inositol	-
20138	16634 ChEBI	raffinose	-
20138	26546 ChEBI	rhamnose	-
31592	17814 ChEBI	salicin	+	carbon source
20138	17992 ChEBI	sucrose	+
31592	17992 ChEBI	sucrose	+	carbon source
31592	27082 ChEBI	trehalose	+	carbon source
20138	18222 ChEBI	xylose	-
31592	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68382	trypsin	+	3.4.21.4	from API zym
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
20138	not determinedn.d.	+	+	+	-	+	+	-	+	+	+	+	+	+	-	+	+	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
12184	sandy soil	Chokoria, Cox's Bazar	Bangladesh	BGD	Asia
67770	Sandy soil at a forest-side waterfall	Chokoria, Cox's Bazar	Bangladesh	BGD	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB200231 (>99% sequence identity) for Catellatospora from Microbeatlas

Aquatic Samples	89
Soil Samples	939
Animal Samples	57
Plant Samples	287
Total Samples	1372

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12184	1	Risk group (German classification) According to TRBA 466
20138	1	German classification According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1129731v1 assembly for Catellatospora chokoriensis 2-25(1)	scaffold	GCA_011297315	310353.3	8065137565	310353	55.32
124043	ASM3952805v1 assembly for Catellatospora chokoriensis JCM 12950	scaffold	GCA_039528055			310353	38.5
66792	ASM1686259v1 assembly for Catellatospora chokoriensis NBRC 107358	contig	GCA_016862595	310353.4	8080799232	310353	36.3

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
12184	Catellatospora chokoriensis gene for 16S rRNA, partial sequence	AB200231	1481		310353

GC content

@ref	GC-content (mol%)	Method
31592	71
67770	71	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1129731v1 assembly for Catellatospora chokoriensis 2-25(1)
NCBI: GCA_011297315

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.78	no
125439	gram_stain	BacteriaNetⓘ	positive	98.73	no
125439	motility	BacteriaNetⓘ	no	88.29	no
125439	spore_formation	BacteriaNetⓘ	yes	63.56	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Catellatospora chokoriensis strain NBRC 107358
PATRIC: 310353.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.59	yes
125438	anaerobic	anaerobicⓘ	no	94.41	yes
125438	spore-forming	spore-formingⓘ	yes	91.17	yes
125438	aerobic	aerobicⓘ	yes	88.34	no
125438	thermophilic	thermophileⓘ	no	96.50	no
125438	flagellated	motile2+ⓘ	no	89.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Catellatospora vulcania sp. nov. and Catellatospora paridis sp. nov., two novel actinobacteria isolated from volcanic sediment and the rhizosphere of Paris polyphylla.	Jia F, Guo S, Shen Y, Gao M, Liu C, Zhou S, Li J, Guan X, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0608-y	2015
Phylogeny	Three novel species of the genus Catellatospora, Catellatospora chokoriensis sp. nov., Catellatospora coxensis sp. nov. and Catellatospora bangladeshensis sp. nov., and transfer of Catellatospora citrea subsp. methionotrophica Asano and Kawamoto 1988 to Catellatospora methionotrophica sp. nov., comb. nov.	Ara I, Kudo T	Int J Syst Evol Microbiol	10.1099/ijs.0.63862-0	2006

References

#12184	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44900
#20138	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27881	IJSEM 393 2006 ( DOI 10.1099/ijs.0.63862-0 , PubMed 16449446 )
#31592	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27881
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Catellatospora chokoriensis (DSM 44900, JCM 12950, NBRC 107358)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_011297315

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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