Name: Catellatospora bangladeshensis 2-70(23)
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7856

Type strain:

Species: Catellatospora bangladeshensis

Strain Designation: 2-70(23)

Culture col. no.: DSM 44899, JCM 12949, NBRC 107357, CGMCC 4.5498, CIP 109161

Strain history: I. Ara 2-70(23).

NCBI tax ID(s): 310355 (species)

SI-ID 289970

DSM 44899, JCM 12949, CIP 109161

Special Collections

Section

Catellatospora bangladeshensis 2-70 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from sandy soil.

Gram-positive
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Catellatospora*
	Species	**Catellatospora bangladeshensis**
	Full Scientific Name (LPSN)	Catellatospora bangladeshensis Ara and Kudo 2006

Information on morphological and physiological properties Morphology

[Ref.: #31592]	Gram stain	positive

[Ref.: #31592]	Cell shape	rod-shaped

[Ref.: #31592]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.5

[Ref.: #20137]	Colony color	Dahlia yellow (1033)
[Ref.: #20137]	Incubation period	10-14 days
[Ref.: #20137]	Cultivation medium used	ISP 2

[Ref.: #20137]	Colony color	Dahlia yellow (1033)
[Ref.: #20137]	Incubation period	10-14 days
[Ref.: #20137]	Cultivation medium used	ISP 3

[Ref.: #20137]	Colony color	Dahlia yellow (1033)
[Ref.: #20137]	Incubation period	10-14 days
[Ref.: #20137]	Cultivation medium used	ISP 4

[Ref.: #20137]	Colony color	Dahlia yellow (1033)
[Ref.: #20137]	Incubation period	10-14 days
[Ref.: #20137]	Cultivation medium used	ISP 5

[Ref.: #20137]	Colony color	Dahlia yellow (1033)
[Ref.: #20137]	Incubation period	10-14 days
[Ref.: #20137]	Cultivation medium used	ISP 6

[Ref.: #20137]	Colony color	Dahlia yellow (1033)
[Ref.: #20137]	Incubation period	10-14 days
[Ref.: #20137]	Cultivation medium used	ISP 7

[Ref.: #31592]

Pigment production

yes

[Ref.: #20137]	Multicellular complex forming ability	no
[Ref.: #20137]	Medium Name (multicellularity)	ISP 2

[Ref.: #20137]	Multicellular complex forming ability	no
[Ref.: #20137]	Medium Name (multicellularity)	ISP 3

[Ref.: #20137]	Multicellular complex forming ability	no
[Ref.: #20137]	Medium Name (multicellularity)	ISP 4

[Ref.: #20137]	Multicellular complex forming ability	no
[Ref.: #20137]	Medium Name (multicellularity)	ISP 5

[Ref.: #20137]	Multicellular complex forming ability	no
[Ref.: #20137]	Medium Name (multicellularity)	ISP 6

[Ref.: #20137]	Multicellular complex forming ability	no
[Ref.: #20137]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12183]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #12183]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

YEAST-STARCH-AGAR(B) (DSMZ Medium 656)

[Ref.: #12183]

Culture medium growth

[Ref.: #12183]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12183]

Culture medium composition

expand / minimize

[Ref.: #20137]

Culture medium

ISP 2

[Ref.: #20137]

Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

[Ref.: #20137]

Culture medium growth

[Ref.: #20137]

Culture medium composition

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[Ref.: #20137]

Culture medium

ISP 4

[Ref.: #20137]

Culture medium growth

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Culture medium composition

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[Ref.: #20137]

Culture medium

ISP 5

[Ref.: #20137]

Culture medium growth

[Ref.: #20137]

Culture medium composition

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[Ref.: #20137]

Culture medium

ISP 6

[Ref.: #20137]

Culture medium growth

[Ref.: #20137]

Culture medium composition

expand / minimize

[Ref.: #20137]

Culture medium

ISP 7

[Ref.: #20137]

Culture medium growth

[Ref.: #20137]

Culture medium composition

expand / minimize

[Ref.: #12183]

Culture medium

YEAST STARCH AGAR (A) (DSMZ Medium 1027)

[Ref.: #12183]

Culture medium growth

[Ref.: #12183]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12183]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12183]	growth	28 °C
[Ref.: #20137]	optimum	28 °C
[Ref.: #31592]	growth	25-30 °C
[Ref.: #31592]	optimum	25-30 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #31592]			optimum	6.8-7.2
[Ref.: #31592]			growth	6.8-7.2

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31592]

Oxygen tolerance

aerobe

[Ref.: #31592]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #31592]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₄), MK-9(H₆), MK-9(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31592]	arabinose ChEBI	+	carbon source
[Ref.: #20137]	arabinose ChEBI	+
[Ref.: #20137]	cellulose ChEBI	+
[Ref.: #20137]	fructose ChEBI	+
[Ref.: #31592]	galactose ChEBI	+	carbon source
[Ref.: #31592]	glucose ChEBI	+	carbon source
[Ref.: #20137]	glucose ChEBI	+
[Ref.: #31592]	lactose ChEBI	+	carbon source
[Ref.: #31592]	maltose ChEBI	+	carbon source
[Ref.: #20137]	mannitol ChEBI	+
[Ref.: #31592]	mannose ChEBI	+	carbon source
[Ref.: #31592]	melibiose ChEBI	+	carbon source
[Ref.: #20137]	myo-inositol ChEBI	+
[Ref.: #20137]	raffinose ChEBI	+
[Ref.: #31592]	rhamnose ChEBI	+	carbon source
[Ref.: #20137]	rhamnose ChEBI	+
[Ref.: #31592]	salicin ChEBI	+	carbon source
[Ref.: #31592]	sucrose ChEBI	+	carbon source
[Ref.: #20137]	sucrose ChEBI	+
[Ref.: #31592]	trehalose ChEBI	+	carbon source
[Ref.: #31592]	xylose ChEBI	+	carbon source
[Ref.: #20137]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #20137]	918	not determinedn.d.	+	+	+	-	+	+	-	+	+	+	-	+	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12183]	Sample type/isolated from	sandy soil
[Ref.: #12183]	Geographic location (country and/or sea, region)	Chokoria, Cox's Bazar
[Ref.: #12183]	Country	Bangladesh
[Ref.: #12183]	Country ISO 3 Code	BGD
[Ref.: #12183]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sandy soil at a forest-side waterfall
[Ref.: #67770]	Geographic location (country and/or sea, region)	Chokoria, Cox's Bazar
[Ref.: #67770]	Country	Bangladesh
[Ref.: #67770]	Country ISO 3 Code	BGD
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB200233 (>99% sequence identity) for Catellatospora bangladeshensis from Microbeatlas

Aquatic Samples	5
Soil Samples	191
Animal Samples	16
Plant Samples	47
Total Samples	259

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12183]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #20137]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12183]	Catellatospora bangladeshensis gene for 16S rRNA, partial sequence	AB200233	1492	GenBank ENA	310355 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Catellatospora bangladeshensis NBRC 107357	GCA_016862575	contig	GenBank ENA	310355 tax ID	*
[Ref.: #66792]	Catellatospora bangladeshensis strain NBRC 107357	310355.3	wgs	PATRIC	310355 tax ID	*

[Ref.: #31592]	GC-content	71 mol%
[Ref.: #67770]	GC-content	71 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Catellatospora bangladeshensis strain NBRC 107357 PATRIC: 310355.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Catellatospora bangladeshensis strain NBRC 107357 PATRIC: 310355.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	87.438	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.321	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	88.701	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.135	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.5	no

Availability in culture collections External links

[Ref.: #12183]

Culture collection no.

DSM 44899, JCM 12949, NBRC 107357, CGMCC 4.5498, CIP 109161

[Ref.: #77293]

SI-ID 289970

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Catellatospora tagetis sp. nov., isolated from the root of a marigold (Tagetes erecta L.).	Zhou Y, Liu C, Zhang Y, Zhao J, Li C, He H, Li J, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0511-6	2015	*
Phylogeny	Three novel species of the genus Catellatospora, Catellatospora chokoriensis sp. nov., Catellatospora coxensis sp. nov. and Catellatospora bangladeshensis sp. nov., and transfer of Catellatospora citrea subsp. methionotrophica Asano and Kawamoto 1988 to Catellatospora methionotrophica sp. nov., comb. nov.	Ara I, Kudo T	Int J Syst Evol Microbiol	10.1099/ijs.0.63862-0	2006	*

References

#12183

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44899

#20137

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31592

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27881 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77293

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID289970.1 )

#27881

IJSEM 393 2006 ( DOI 10.1099/ijs.0.63862-0 , PubMed 16449446 )

* These data were automatically processed and therefore are not curated

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Catellatospora bangladeshensis strain NBRC 107357

Catellatospora bangladeshensis strain NBRC 107357

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