Strain identifier

BacDive ID: 7858

Type strain: Yes

Species: Catellatospora coxensis

Strain Designation: 2-29(17)

Strain history: I. Ara 2-29(17).

NCBI tax ID(s): 310354 (species)

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General

@ref: 12185

BacDive-ID: 7858

DSM-Number: 44901

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped

description: Catellatospora coxensis 2-29 is an aerobe, spore-forming, mesophilic bacterium that was isolated from sandy soil.

NCBI tax id

  • NCBI tax id: 310354
  • Matching level: species

strain history

@refhistory
12185<- JCM <- I. Ara
67770I. Ara 2-29(17).

doi: 10.13145/bacdive7858.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Catellatospora
  • species: Catellatospora coxensis
  • full scientific name: Catellatospora coxensis Ara and Kudo 2006

@ref: 12185

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Catellatospora

species: Catellatospora coxensis

full scientific name: Catellatospora coxensis Ara and Kudo 2006

strain designation: 2-29(17)

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
31592positiverod-shapedno
69480no95.231
69480positive100

pigmentation

  • @ref: 31592
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
12185ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
12185YEAST-STARCH-AGAR(B) (DSMZ Medium 656)yeshttps://mediadive.dsmz.de/medium/656Name: YEAST-STARCH-AGAR(B) (DSMZ Medium 656) Composition: Starch 15.0 g/l Agar 15.0 g/l Yeast extract 4.0 g/l MgSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l Distilled water
12185YEAST STARCH AGAR (A) (DSMZ Medium 1027)yeshttps://mediadive.dsmz.de/medium/1027Name: YEAST STARCH AGAR (A) (DSMZ Medium 1027) Composition: Agar 15.0 g/l Starch 10.0 g/l Yeast extract 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
12185positivegrowth28mesophilic
31592positivegrowth20-30
31592positiveoptimum20-30
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
31592positivegrowth06-09alkaliphile
31592positiveoptimum06-09

Physiology and metabolism

oxygen tolerance

  • @ref: 31592
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
31592yes
69481yes100
69480yes99.999

halophily

@refsaltgrowthtested relationconcentration
31592NaClpositivegrowth1 %
31592NaClpositiveoptimum1 %

observation

@refobservation
31592aggregates in chains
67770quinones: MK-9(H4), MK-9(H6), MK-9(H2)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3159222599arabinose+carbon source
3159228260galactose+carbon source
3159217234glucose+carbon source
3159217754glycerol+carbon source
3159217716lactose+carbon source
3159217306maltose+carbon source
3159237684mannose+carbon source
3159228053melibiose+carbon source
3159226546rhamnose+carbon source
3159233942ribose+carbon source
3159217992sucrose+carbon source
3159227082trehalose+carbon source
3159218222xylose+carbon source

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
12185sandy soilChokoria, Cox's BazarBangladeshBGDAsia
67770Sandy soil at a forest-side waterfallChokoria, Cox's BazarBangladeshBGDAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Sandy
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_19076.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_3745;97_11741;98_14429;99_19076&stattab=map
  • Last taxonomy: Catellatospora
  • 16S sequence: AB200232
  • Sequence Identity:
  • Total samples: 1372
  • soil counts: 939
  • aquatic counts: 89
  • animal counts: 57
  • plant counts: 287

Safety information

risk assessment

  • @ref: 12185
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 12185
  • description: Catellatospora coxensis gene for 16S rRNA, partial sequence
  • accession: AB200232
  • length: 1508
  • database: ena
  • NCBI tax ID: 310354

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Catellatospora coxensis NBRC 107359GCA_016862635contigncbi310354
66792Catellatospora coxensis strain NBRC 107359310354.3wgspatric310354

GC content

@refGC-contentmethod
3159271
6777071high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes86.328no
anaerobicno99.184no
halophileno93.931yes
spore-formingyes93.949no
glucose-utilyes87.187yes
motileno93.4no
flagellatedno97.472no
aerobicyes94.387yes
thermophileno99.111no
glucose-fermentno89.946no

External links

@ref: 12185

culture collection no.: DSM 44901, JCM 12951, NBRC 107359, CIP 109163

straininfo link

  • @ref: 77295
  • straininfo: 289972

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16449446Three novel species of the genus Catellatospora, Catellatospora chokoriensis sp. nov., Catellatospora coxensis sp. nov. and Catellatospora bangladeshensis sp. nov., and transfer of Catellatospora citrea subsp. methionotrophica Asano and Kawamoto 1988 to Catellatospora methionotrophica sp. nov., comb. nov.Ara I, Kudo TInt J Syst Evol Microbiol10.1099/ijs.0.63862-02006Bacterial Typing Techniques, Bangladesh, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Genotype, Micromonosporaceae/chemistry/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species SpecificityGenetics
Phylogeny25261080Catellatospora aurea sp. nov., a novel actinomycete isolated from soil.Liu C, Zhao J, Guan X, Li L, Li W, Wang X, Xiang WAntonie Van Leeuwenhoek10.1007/s10482-014-0287-02014Bacterial Typing Techniques, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Micromonosporaceae/*classification/genetics/*isolation & purification/physiology, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil MicrobiologyGenetics
Phylogeny26467683Catellatospora vulcania sp. nov. and Catellatospora paridis sp. nov., two novel actinobacteria isolated from volcanic sediment and the rhizosphere of Paris polyphylla.Jia F, Guo S, Shen Y, Gao M, Liu C, Zhou S, Li J, Guan X, Wang X, Xiang WAntonie Van Leeuwenhoek10.1007/s10482-015-0608-y2015Base Sequence, China, Cluster Analysis, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Geologic Sediments/*microbiology, Micromonosporaceae/chemistry/*classification/genetics/*isolation & purification, Microscopy, Electron, Scanning, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, Tracheophyta/*microbiologyTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
12185Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44901)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44901
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31592Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2788128776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77295Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID289972.1StrainInfo: A central database for resolving microbial strain identifiers