Name: Nesterenkonia lutea DSM 15666
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7766

Type strain:

Species: Nesterenkonia lutea

Culture col. no.: DSM 15666, CCTCC AA 203010, CIP 108679, KCTC 19013, YIM 70081, JCM 13019, CIP 107970, JCM 19019

Strain history: CIP <- 2003, W.J. Li, Yunnan Univ., Kunming, China: strain YIM 70081

NCBI tax ID(s): 272919 (species)

SI-ID 134252

DSM 15666, KCTC 19013, CIP 108679, JCM 13019, CIP 107970

Special Collections

Section

Nesterenkonia lutea DSM 15666 is an aerobe, Gram-positive, motile bacterium that was isolated from soil.

coccus-shaped
Gram-positive
motile
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Nesterenkonia*
	Species	**Nesterenkonia lutea**
	Full Scientific Name (LPSN)	Nesterenkonia lutea Li et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31313]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #120684]	Gram stain	positive

[Ref.: #31313]	Cell shape	coccus-shaped
[Ref.: #120684]	Cell shape	coccus-shaped

[Ref.: #31313]	Motility	yes
[Ref.: #120684]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6021]

Culture medium

MODIFIED ISP5 MEDIUM WITH SODIUM CHLORIDE (DSMZ Medium 993c)

[Ref.: #6021]

Culture medium growth

[Ref.: #6021]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6021]

Culture medium composition

expand / minimize

[Ref.: #37437]

Culture medium

Marine agar (MA)

[Ref.: #37437]

Culture medium growth

[Ref.: #37437]

Culture medium composition

expand / minimize

[Ref.: #120684]

Culture medium

CIP Medium 13

[Ref.: #120684]

Culture medium growth

[Ref.: #120684]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6021]		growth	28 °C
[Ref.: #37437]		growth	30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #67771]		growth	30 °C
[Ref.: #120684]		growth	10-37 °C
[Ref.: #120684]	no	growth	41 °C
[Ref.: #120684]	no	growth	45 °C

	pH	Kind of pH		pH
[Ref.: #31313]			optimum	7.5
[Ref.: #31313]			growth	6.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #120684]	Oxygen tolerance	microaerophile

[Ref.: #31313]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31313]		NaCl		growth	0-20	%
[Ref.: #31313]		NaCl		optimum	7.5	%

[Ref.: #6021]	Murein short key	A11.42
[Ref.: #6021]	Murein types	A4alpha L-Lys-Gly-D-Asp

[Ref.: #67770]	Observation	quinones: MK-8, MK-7
[Ref.: #67771]	Observation	quinones: MK-8, MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31313]	arabinose ChEBI	+	carbon source
[Ref.: #31313]	cellobiose ChEBI	+	carbon source
[Ref.: #31313]	dextrin ChEBI	+	carbon source
[Ref.: #31313]	fructose ChEBI	+	carbon source
[Ref.: #31313]	galactose ChEBI	+	carbon source
[Ref.: #31313]	glucose ChEBI	+	carbon source
[Ref.: #120684]	hippurate ChEBI	-	hydrolysis
[Ref.: #31313]	maltose ChEBI	+	carbon source
[Ref.: #31313]	mannitol ChEBI	+	carbon source
[Ref.: #31313]	mannose ChEBI	+	carbon source
[Ref.: #31313]	nitrate ChEBI	+	reduction
[Ref.: #120684]	nitrate ChEBI	-	reduction
[Ref.: #120684]	nitrite ChEBI	-	reduction
[Ref.: #31313]	salicin ChEBI	+	carbon source
[Ref.: #31313]	sucrose ChEBI	+	carbon source
[Ref.: #31313]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #120684]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #120684]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #120684]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120684]	amylase	-
[Ref.: #120684]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120684]	caseinase	-	3.4.21.50
[Ref.: #120684]	catalase	+	1.11.1.6
[Ref.: #120684]	coagulase	-
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #120684]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #120684]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #120684]	gelatinase	-
[Ref.: #120684]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120684]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120684]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120684]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120684]	oxidase	-
[Ref.: #120684]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120684]	tween esterase	-
[Ref.: #120684]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120684]	10785	-	-	+	-	-	+	-	-	-	-	-	+	-	+	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6021]	Sample type/isolated from	soil
[Ref.: #6021]	Geographic location (country and/or sea, region)	Xinjiang province
[Ref.: #6021]	Country	China
[Ref.: #6021]	Country ISO 3 Code	CHN
[Ref.: #6021]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Saline soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xinjiang Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	Saline soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Xinjiang Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia

[Ref.: #120684]	Sample type/isolated from	Environment, Soil
[Ref.: #120684]	Geographic location (country and/or sea, region)	Xinjiang
[Ref.: #120684]	Country	China
[Ref.: #120684]	Country ISO 3 Code	CHN
[Ref.: #120684]	Continent	Asia
[Ref.: #120684]	Isolation date	2002
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6021]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120684]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6021]	Nesterenkonia luteus strain YIM 70081 16S ribosomal RNA gene, partial sequence	AY588278	1502	GenBank ENA	272919 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nesterenkonia lutea DSM 15666	GCA_014873955	contig	GenBank ENA	272919 tax ID	*
[Ref.: #66792]	Nesterenkonia lutea strain DSM 15666	272919.13	wgs	PATRIC	272919 tax ID	*
[Ref.: #66792]	Nesterenkonia lutea DSM 15666	2870870664	draft	JGI IMG/M	272919 tax ID	*

[Ref.: #6021]	GC-content	64.5 mol%
[Ref.: #67770]	GC-content	64.5 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nesterenkonia lutea strain DSM 15666 PATRIC: 272919.13
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nesterenkonia lutea strain DSM 15666 PATRIC: 272919.13
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.778	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.866	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	74.64	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.332	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	87.847	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	76.5	no

Availability in culture collections External links

[Ref.: #6021]

Culture collection no.

DSM 15666, CCTCC AA 203010, CIP 108679, KCTC 19013, YIM 70081, JCM 13019, CIP 107970, JCM 19019

[Ref.: #77209]

SI-ID 134252

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nesterenkonia aurantiaca sp. nov., an alkaliphilic actinobacterium isolated from Antarctica.	Finore I, Orlando P, Di Donato P, Leone L, Nicolaus B, Poli A	Int J Syst Evol Microbiol	10.1099/ijsem.0.000917	2016	*
Phylogeny	Nesterenkonia sandarakina sp. nov. and Nesterenkonia lutea sp. nov., novel actinobacteria, and emended description of the genus Nesterenkonia.	Li WJ, Chen HH, Kim CJ, Zhang YQ, Park DJ, Lee JC, Xu LH, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.63281-0	2005	*

References

#6021

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15666

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31313

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27628 (see below)

#37437 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77209

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134252.1 )

#120684 Collection of Institut Pasteur ; Curators of the CIP; CIP 107970

#27628

IJSEM 463 2005 ( DOI 10.1099/ijs.0.63281-0 , PubMed 15653919 )

* These data were automatically processed and therefore are not curated

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Nesterenkonia lutea strain DSM 15666

Nesterenkonia lutea strain DSM 15666

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