Name: Nesterenkonia xinjiangensis DSM 15475
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7765

Type strain:

Species: Nesterenkonia xinjiangensis

Culture col. no.: DSM 15475, CCTCC AA 001025, YIM 70097, JCM 13021, KCTC 19016

Strain history: KCTC 19016 <-- W.-J. Li YIM 70097.

NCBI tax ID(s): 225327 (species)

SI-ID 132023

DSM 15475, JCM 13021, KCTC 19016

Special Collections

Section

Nesterenkonia xinjiangensis DSM 15475 is a rod-shaped bacterium that was isolated from soil.

rod-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Nesterenkonia*
	Species	**Nesterenkonia xinjiangensis**
	Full Scientific Name (LPSN)	Nesterenkonia xinjiangensis Li et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %91.185

[Ref.: #30096]	Cell shape	rod-shaped

[Ref.: #30096]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %92.5

[Ref.: #30096]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5945]

Culture medium

MODIFIED ISP5 MEDIUM (DSMZ Medium 993b)

[Ref.: #5945]

Culture medium growth

[Ref.: #5945]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5945]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #5945]	growth	28 °C
[Ref.: #30096]	growth	20-40 °C
[Ref.: #30096]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #30096]			optimum	9.5
[Ref.: #30096]			growth	07-12

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30096]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %90

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30096]		NaCl		growth	0-25	%
[Ref.: #30096]		NaCl		optimum	10	%

[Ref.: #5945]	Murein short key	A11.56
[Ref.: #5945]	Murein types	A4alpha L-Lys-Gly-L-Glu

[Ref.: #67770]

Observation

quinones: MK-8, MK-7, MK-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30096]	arabinose ChEBI	+	carbon source
[Ref.: #30096]	cellobiose ChEBI	+	carbon source
[Ref.: #30096]	dextrin ChEBI	+	carbon source
[Ref.: #30096]	fructose ChEBI	+	carbon source
[Ref.: #30096]	galactose ChEBI	+	carbon source
[Ref.: #30096]	glucose ChEBI	+	carbon source
[Ref.: #30096]	lactose ChEBI	+	carbon source
[Ref.: #30096]	maltose ChEBI	+	carbon source
[Ref.: #30096]	mannose ChEBI	+	carbon source
[Ref.: #30096]	ribose ChEBI	+	carbon source
[Ref.: #30096]	sucrose ChEBI	+	carbon source
[Ref.: #30096]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30096]		gelatinase	+
[Ref.: #30096]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5945]	Sample type/isolated from	soil
[Ref.: #5945]	Geographic location (country and/or sea, region)	Xijiang
[Ref.: #5945]	Country	China
[Ref.: #5945]	Country ISO 3 Code	CHN
[Ref.: #5945]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Hypersaline soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xinjang Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5945]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5945]	Nesterenkonia sp. YIM 70097 16S ribosomal RNA gene, partial sequence	AY226510	1506	GenBank ENA	225327 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nesterenkonia xinjiangensis DSM 15475	GCA_013410745	contig	GenBank ENA	225327 tax ID
[Ref.: #66792]	Nesterenkonia xinjiangensis strain DSM 15475	225327.3	wgs	PATRIC	225327 tax ID	*
[Ref.: #66792]	Nesterenkonia xinjiangensis DSM 15475	2857419370	draft	JGI IMG/M	225327 tax ID	*

[Ref.: #30096]	GC-content	66.7 mol%
[Ref.: #67770]	GC-content	66.7 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nesterenkonia xinjiangensis strain DSM 15475 PATRIC: 225327.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	90	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nesterenkonia xinjiangensis strain DSM 15475 PATRIC: 225327.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.185	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.544	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	77.474	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.317	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92.5	no

Availability in culture collections External links

[Ref.: #5945]

Culture collection no.

DSM 15475, CCTCC AA 001025, YIM 70097, JCM 13021, KCTC 19016

[Ref.: #77208]

SI-ID 132023

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nesterenkonia aurantiaca sp. nov., an alkaliphilic actinobacterium isolated from Antarctica.	Finore I, Orlando P, Di Donato P, Leone L, Nicolaus B, Poli A	Int J Syst Evol Microbiol	10.1099/ijsem.0.000917	2016	*
Phylogeny	Nesterenkonia alkaliphila sp. nov., an alkaliphilic, halotolerant actinobacteria isolated from the western Pacific Ocean.	Zhang G, Zhang Y, Yin X, Wang S	Int J Syst Evol Microbiol	10.1099/ijs.0.065623-0	2014	*
Phylogeny	Nesterenkonia rhizosphaerae sp. nov., an alkaliphilic actinobacterium isolated from rhizosphere soil in a saline-alkaline desert.	Wang HF, Zhang YG, Chen JY, Hozzein WN, Li L, Wadaan MAM, Zhang YM, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.066894-0	2014	*
Enzymology	Gene cloning, expression, and characterization of a thermostable xylanase from Nesterenkonia xinjiangensis CCTCC AA001025.	Kui H, Luo H, Shi P, Bai Y, Yuan T, Wang Y, Yang P, Dong S, Yao B	Appl Biochem Biotechnol	10.1007/s12010-009-8815-5	2009	*
Phylogeny	Nesterenkonia halotolerans sp. nov. and Nesterenkonia xinjiangensis sp. nov., actinobacteria from saline soils in the west of China.	Li WJ, Chen HH, Zhang YQ, Schumann P, Stackebrandt E, Xu LH, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.02935-0	2004	*

References

#5945

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15475

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30096

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26452 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77208

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID132023.1 )

#26452

IJSEM 837 2004 ( DOI 10.1099/ijs.0.02935-0 , PubMed 15143032 )

* These data were automatically processed and therefore are not curated

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Nesterenkonia xinjiangensis strain DSM 15475

Nesterenkonia xinjiangensis strain DSM 15475

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