Name: Kocuria atrinae P30
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7665

Type strain:

Species: Kocuria atrinae

Strain Designation: P30

Culture col. no.: DSM 23883, JCM 15914, KCTC 19594

Strain history: <- JW Bae, KRIBB

NCBI tax ID(s): 592377 (species)

SI-ID 397153

DSM 23883

Section

Kocuria atrinae P30 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from jeotgal, traditional fermented seafood.

coccus-shaped
Gram-positive
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Kocuria*
	Species	**Kocuria atrinae**
	Full Scientific Name (LPSN)	Kocuria atrinae Park et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29503]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #29503]	Cell width	1.25 µm

[Ref.: #29503]	Cell shape	coccus-shaped

[Ref.: #29503]	Motility	no

[Ref.: #21417]	Colony color	Ivory (1014)
[Ref.: #21417]	Incubation period	10-14 days
[Ref.: #21417]	Cultivation medium used	ISP 2

[Ref.: #21417]	Colony color	Golden yellow (1004)
[Ref.: #21417]	Incubation period	10-14 days
[Ref.: #21417]	Cultivation medium used	ISP 5

[Ref.: #21417]	Colony color	Zinc yellow (1018)
[Ref.: #21417]	Incubation period	10-14 days
[Ref.: #21417]	Cultivation medium used	ISP 7

[Ref.: #21417]	Colony color	Golden yellow (1004)
[Ref.: #21417]	Incubation period	10-14 days
[Ref.: #21417]	Cultivation medium used	Suter with tyrosine

[Ref.: #21417]	Colony color	Zinc yellow (1018)
[Ref.: #21417]	Incubation period	10-14 days
[Ref.: #21417]	Cultivation medium used	Suter without tyrosine

[Ref.: #21417]	Incubation period	10-14 days
[Ref.: #21417]	Cultivation medium used	ISP 4

[Ref.: #29503]

Pigment production

yes

[Ref.: #21417]	Multicellular complex forming ability	no
[Ref.: #21417]	Medium Name (multicellularity)	ISP 2

[Ref.: #21417]	Multicellular complex forming ability	no
[Ref.: #21417]	Medium Name (multicellularity)	ISP 3

[Ref.: #21417]	Multicellular complex forming ability	no
[Ref.: #21417]	Medium Name (multicellularity)	ISP 4

[Ref.: #21417]	Multicellular complex forming ability	no
[Ref.: #21417]	Medium Name (multicellularity)	ISP 5

[Ref.: #21417]	Multicellular complex forming ability	no
[Ref.: #21417]	Medium Name (multicellularity)	ISP 6

[Ref.: #21417]	Multicellular complex forming ability	no
[Ref.: #21417]	Medium Name (multicellularity)	ISP 7

[Ref.: #21417]	Multicellular complex forming ability	no
[Ref.: #21417]	Medium Name (multicellularity)	Suter with tyrosine

[Ref.: #21417]	Multicellular complex forming ability	no
[Ref.: #21417]	Medium Name (multicellularity)	Suther without tyrosine

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17420]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #17420]

Culture medium growth

[Ref.: #17420]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17420]

Culture medium composition

expand / minimize

[Ref.: #21417]

Culture medium

ISP 2

[Ref.: #21417]

Culture medium growth

[Ref.: #21417]

Culture medium composition

expand / minimize

[Ref.: #21417]

Culture medium

ISP 4

[Ref.: #21417]

Culture medium growth

[Ref.: #21417]

Culture medium composition

expand / minimize

[Ref.: #21417]

Culture medium

ISP 5

[Ref.: #21417]

Culture medium growth

[Ref.: #21417]

Culture medium composition

expand / minimize

[Ref.: #21417]

Culture medium

ISP 7

[Ref.: #21417]

Culture medium growth

[Ref.: #21417]

Culture medium composition

expand / minimize

[Ref.: #21417]

Culture medium

Suter with tyrosine

[Ref.: #21417]

Culture medium growth

[Ref.: #21417]

Culture medium composition

expand / minimize

[Ref.: #21417]

Culture medium

Suter without tyrosine

[Ref.: #21417]

Culture medium growth

[Ref.: #21417]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17420]	growth	28 °C
[Ref.: #29503]	growth	25-37 °C
[Ref.: #29503]	optimum	33.5 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #17420]	Temperature range	mesophilic
[Ref.: #29503]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29503]			optimum	8.5
[Ref.: #29503]			growth	07-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29503]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Salt		Salt conc.
[Ref.: #21417]	NaCl	maximum	10	%
[Ref.: #29503]	NaCl	growth	0-4	%
[Ref.: #29503]	NaCl	optimum	1	%

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29503]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #29503]	acetate ChEBI	+	carbon source
[Ref.: #29503]	asparagine ChEBI	+	carbon source
[Ref.: #21417]	cellulose ChEBI	-
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #29503]	dextrin ChEBI	+	carbon source
[Ref.: #29503]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #21417]	fructose ChEBI	-
[Ref.: #29503]	fructose ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #29503]	gluconate ChEBI	+	carbon source
[Ref.: #21417]	glucose ChEBI	+/-
[Ref.: #29503]	glucose ChEBI	+	carbon source
[Ref.: #29503]	glutamate ChEBI	+	carbon source
[Ref.: #29503]	glycerol ChEBI	+	carbon source
[Ref.: #29503]	inosine ChEBI	+	carbon source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #29503]	malate ChEBI	+	carbon source
[Ref.: #29503]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	+	fermentation	* from API Coryne
[Ref.: #21417]	mannose ChEBI	-
[Ref.: #29503]	mannose ChEBI	+	carbon source
[Ref.: #29503]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #21417]	myo-inositol ChEBI	-
[Ref.: #29503]	nitrate ChEBI	+	reduction
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #29503]	propionate ChEBI	+	carbon source
[Ref.: #29503]	putrescine ChEBI	+	carbon source
[Ref.: #29503]	pyruvate ChEBI	+	carbon source
[Ref.: #21417]	raffinose ChEBI	-
[Ref.: #21417]	rhamnose ChEBI	+/-
[Ref.: #29503]	ribose ChEBI	+	carbon source
[Ref.: #29503]	sorbitol ChEBI	+	carbon source
[Ref.: #29503]	succinate ChEBI	+	carbon source
[Ref.: #21417]	sucrose ChEBI	+/-
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #29503]	thymidine ChEBI	+	carbon source
[Ref.: #29503]	trehalose ChEBI	+	carbon source
[Ref.: #29503]	tween 40 ChEBI	+	carbon source
[Ref.: #29503]	tween 80 ChEBI	+	carbon source
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #29503]	uridine ChEBI	+	carbon source
[Ref.: #29503]	xylitol ChEBI	+	carbon source
[Ref.: #21417]	xylose ChEBI	+/-
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #29503]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #29503]	urease	+	3.5.1.5
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #21417]	534	+	-	-	+	-	-	-	-	-	-	-	not determinedn.d.	+	+/-	+/-	-	+	-	+	+/-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #21417]	1054	+/-	+	+/-	+	-	+	-	-	-	-	+/-	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17420]	Sample type/isolated from	jeotgal, traditional fermented seafood
[Ref.: #17420]	Country	Republic of Korea
[Ref.: #17420]	Country ISO 3 Code	KOR
[Ref.: #17420]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Korean traditional fermented seafood
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From Jeotgal, fermented shellfisg
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Seafood
#Engineered	#Food production	#Fermented

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17420]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #21417]	Biosafety level	L1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17420]	Kocuria atrinae strain P30 16S ribosomal RNA gene, partial sequence	FJ607311	1472	ENA	592377 tax ID

[Ref.: #17420]	GC-content	70.2 mol%
[Ref.: #67770]	GC-content	70.2 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #17420]

Culture collection no.

DSM 23883, JCM 15914, KCTC 19594

[Ref.: #77109]

SI-ID 397153

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kocuria atrinae sp. nov., isolated from traditional Korean fermented seafood.	Park EJ, Kim MS, Roh SW, Jung MJ, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.014506-0	2009	*

References

#17420

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23883

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21417

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#29503

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25903 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#77109

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397153.1 )

#25903

IJSEM 914 2010 ( DOI 10.1099/ijs.0.014506-0 , PubMed 19661502 )

* These data were automatically processed and therefore are not curated

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