Name: Kocuria salsicia 104
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7666

Type strain:

Species: Kocuria salsicia

Strain Designation: 104

Culture col. no.: DSM 24776, JCM 16361, KACC 21128, NBRC 109970

Strain history: J.-W. Bae 104.

NCBI tax ID(s): 664639 (species)

SI-ID 398286

DSM 24776

Section

Kocuria salsicia 104 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from traditional salt-fermented seafood.

coccus-shaped
Gram-positive
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Kocuria*
	Species	**Kocuria salsicia**
	Full Scientific Name (LPSN)	Kocuria salsicia Yun et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29803]	Gram stain	positive

[Ref.: #29803]	Cell length	1.25 µm

[Ref.: #29803]	Cell width	1.25 µm

[Ref.: #29803]	Cell shape	coccus-shaped

[Ref.: #29803]	Motility	no

[Ref.: #21378]	Colony color	Honey yellow (1005)
[Ref.: #21378]	Incubation period	10-14 days
[Ref.: #21378]	Cultivation medium used	ISP 2

[Ref.: #21378]	Colony color	Lemon yellow (1012)
[Ref.: #21378]	Incubation period	10-14 days
[Ref.: #21378]	Cultivation medium used	ISP 3

[Ref.: #21378]	Colony color	Lemon yellow (1012)
[Ref.: #21378]	Incubation period	10-14 days
[Ref.: #21378]	Cultivation medium used	ISP 4

[Ref.: #21378]	Colony color	Zinc yellow
[Ref.: #21378]	Incubation period	10-14 days
[Ref.: #21378]	Cultivation medium used	ISP 5

[Ref.: #21378]	Colony color	Lemon yellow (1012)
[Ref.: #21378]	Incubation period	10-14 days
[Ref.: #21378]	Cultivation medium used	ISP 7

[Ref.: #21378]	Colony color	Lemon yellow (1012)
[Ref.: #21378]	Incubation period	10-14 days
[Ref.: #21378]	Cultivation medium used	Suter with tyrosine

[Ref.: #21378]	Colony color	Lemon yellow (1012)
[Ref.: #21378]	Incubation period	10-14 days
[Ref.: #21378]	Cultivation medium used	Suter without tyrosine

[Ref.: #29803]

Pigment production

yes

[Ref.: #21378]	Multicellular complex forming ability	no
[Ref.: #21378]	Medium Name (multicellularity)	ISP 2

[Ref.: #21378]	Multicellular complex forming ability	no
[Ref.: #21378]	Medium Name (multicellularity)	ISP 3

[Ref.: #21378]	Multicellular complex forming ability	no
[Ref.: #21378]	Medium Name (multicellularity)	ISP 4

[Ref.: #21378]	Multicellular complex forming ability	no
[Ref.: #21378]	Medium Name (multicellularity)	ISP 5

[Ref.: #21378]	Multicellular complex forming ability	no
[Ref.: #21378]	Medium Name (multicellularity)	ISP 7

[Ref.: #21378]	Multicellular complex forming ability	no
[Ref.: #21378]	Medium Name (multicellularity)	Suter with tyrosine

[Ref.: #21378]	Multicellular complex forming ability	no
[Ref.: #21378]	Medium Name (multicellularity)	Suter without tyrosine

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17760]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #17760]

Culture medium growth

[Ref.: #17760]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17760]

Culture medium composition

expand / minimize

[Ref.: #21378]

Culture medium

ISP 2

[Ref.: #21378]

Culture medium growth

[Ref.: #21378]

Culture medium composition

expand / minimize

[Ref.: #21378]

Culture medium

ISP 3

[Ref.: #21378]

Culture medium growth

[Ref.: #21378]

Culture medium composition

expand / minimize

[Ref.: #21378]

Culture medium

ISP 4

[Ref.: #21378]

Culture medium growth

[Ref.: #21378]

Culture medium composition

expand / minimize

[Ref.: #21378]

Culture medium

ISP 5

[Ref.: #21378]

Culture medium growth

[Ref.: #21378]

Culture medium composition

expand / minimize

[Ref.: #21378]

Culture medium

ISP 7

[Ref.: #21378]

Culture medium growth

[Ref.: #21378]

Culture medium composition

expand / minimize

[Ref.: #21378]

Culture medium

Suter with tyrosine

[Ref.: #21378]

Culture medium growth

[Ref.: #21378]

Culture medium composition

expand / minimize

[Ref.: #21378]

Culture medium

Suter without tyrosine

[Ref.: #21378]

Culture medium growth

[Ref.: #21378]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17760]	growth	28 °C
[Ref.: #29803]	growth	15-37 °C
[Ref.: #29803]	optimum	33.5 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #17760]	Temperature range	mesophilic
[Ref.: #29803]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29803]			optimum	7.5
[Ref.: #29803]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29803]

Oxygen tolerance

aerobe

	Salt		Salt conc.
[Ref.: #21378]	NaCl	maximum	5	%
[Ref.: #29803]	NaCl	growth	0-4	%
[Ref.: #29803]	NaCl	optimum	1	%

[Ref.: #29803]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29803]	adipate ChEBI	+	carbon source
[Ref.: #21378]	arabinose ChEBI	+
[Ref.: #21378]	cellulose ChEBI	+
[Ref.: #29803]	citrate ChEBI	+	carbon source
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #21378]	fructose ChEBI	+
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #21378]	glucose ChEBI	+
[Ref.: #29803]	glucose ChEBI	+	carbon source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #29803]	malate ChEBI	+	carbon source
[Ref.: #29803]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #21378]	mannose ChEBI	+
[Ref.: #29803]	mannose ChEBI	+	carbon source
[Ref.: #21378]	myo-inositol ChEBI	+
[Ref.: #29803]	nitrate ChEBI	+	reduction
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #29803]	phenylacetate ChEBI	+	carbon source
[Ref.: #21378]	raffinose ChEBI	-
[Ref.: #21378]	rhamnose ChEBI	+
[Ref.: #21378]	sucrose ChEBI	+
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #21378]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29803]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #29803]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #29803]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #29803]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #29803]	gelatinase	+
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #29803]	urease	+	3.5.1.5
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #21378]	507	-	+	+	-	-	-	+	-	-	+	-	not determinedn.d.	+	-	-	-	-	-	+	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #21378]	1019	not determinedn.d.	-	+	+	-	+	+/-	-	+	-	-	-	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17760]	Sample type/isolated from	traditional salt-fermented seafood
[Ref.: #17760]	Country	Republic of Korea
[Ref.: #17760]	Country ISO 3 Code	KOR
[Ref.: #17760]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Traditional salt-fermented seafood
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Seafood
#Engineered	#Food production	#Fermented

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ352404 (>99% sequence identity) for Kocuria from Microbeatlas

Aquatic Samples	135
Soil Samples	19
Animal Samples	1063
Plant Samples	20
Total Samples	1237

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17760]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17760]	Kocuria salsicia strain 104 16S ribosomal RNA gene, partial sequence	GQ352404	1439	ENA	664639 tax ID

[Ref.: #17760]	GC-content	60.6 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #29803]	GC-content	60.6 mol%

Availability in culture collections External links

[Ref.: #17760]

Culture collection no.

DSM 24776, JCM 16361, KACC 21128, NBRC 109970

[Ref.: #77110]

SI-ID 398286

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kocuria tytonis sp. nov., isolated from the uropygial gland of an American barn owl (Tyto furcata).	Braun MS, Wang E, Zimmermann S, Wagner H, Wink M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003170	2019	*
Phylogeny	Kocuria salsicia sp. nov., isolated from salt-fermented seafood.	Yun JH, Roh SW, Jung MJ, Kim MS, Park EJ, Shin KS, Nam YD, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.021469-0	2010	*

References

#17760

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24776

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21378

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#29803

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26180 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#77110

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398286.1 )

#26180

IJSEM 286 2011 ( DOI 10.1099/ijs.0.021469-0 , PubMed 20228215 )

* These data were automatically processed and therefore are not curated

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