Name: Rothia koreensis P31
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7664

Type strain:

Species: Rothia koreensis

Strain Designation: P31

Culture col. no.: DSM 23367, JCM 15915, KCTC 19595, CIP 110210

Strain history: CIP <- 2010, JCM <- 2009, J.W. Bae, Kyung Hee Univ., Seoul, Korea: strain P31

NCBI tax ID(s): 592378 (species)

SI-ID 366445

JCM 15915, KCTC 19595, DSM 23367, CIP 110210

Section

Rothia koreensis P31 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from Korean traditional fermented seafood .

coccus-shaped
Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Rothia*
	Species	**Rothia koreensis**
	Full Scientific Name (LPSN)	Rothia koreensis (Park et al. 2010) Nouioui et al. 2018

Synonym

Kocuria koreensis

Information on morphological and physiological properties Morphology

[Ref.: #29398]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #120478]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #29398]	Cell width	1.25 µm

[Ref.: #29398]	Cell shape	coccus-shaped
[Ref.: #120478]	Cell shape	coccus-shaped

[Ref.: #29398]	Motility	no
[Ref.: #120478]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %94.338

[Ref.: #29398]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16810]

Culture medium

MODIFIED BACTO MARINE BROTH (DSMZ Medium 514d)

[Ref.: #16810]

Culture medium growth

[Ref.: #16810]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16810]

Culture medium composition

expand / minimize

[Ref.: #40417]

Culture medium

Marine agar (MA)

[Ref.: #40417]

Culture medium growth

[Ref.: #40417]

Culture medium composition

expand / minimize

[Ref.: #120478]

Culture medium

CIP Medium 13

[Ref.: #120478]

Culture medium growth

[Ref.: #120478]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #16810]	growth	28 °C
[Ref.: #29398]	growth	30-37 °C
[Ref.: #29398]	optimum	33.5 °C
[Ref.: #40417]	growth	30 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #16810]	Temperature range	mesophilic
[Ref.: #29398]	Temperature range	mesophilic
[Ref.: #40417]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29398]			optimum	5.5
[Ref.: #29398]			growth	05-06

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29398]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #120478]	Oxygen tolerance	obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29398]		NaCl		growth	0-4	%
[Ref.: #29398]		NaCl		optimum	2	%

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29398]	acetate ChEBI	+	carbon source
[Ref.: #29398]	asparagine ChEBI	+	carbon source
[Ref.: #29398]	fructose ChEBI	+	carbon source
[Ref.: #29398]	glucose ChEBI	+	carbon source
[Ref.: #29398]	glycerol ChEBI	+	carbon source
[Ref.: #29398]	lactate ChEBI	+	carbon source
[Ref.: #29398]	mannitol ChEBI	+	carbon source
[Ref.: #29398]	mannose ChEBI	+	carbon source
[Ref.: #29398]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #29398]	myo-inositol ChEBI	+	carbon source
[Ref.: #120478]	nitrate ChEBI	-	reduction
[Ref.: #120478]	nitrite ChEBI	-	reduction
[Ref.: #29398]	pyruvate ChEBI	+	carbon source
[Ref.: #29398]	ribose ChEBI	+	carbon source
[Ref.: #29398]	sorbitol ChEBI	+	carbon source
[Ref.: #29398]	tween 40 ChEBI	+	carbon source
[Ref.: #29398]	tween 80 ChEBI	+	carbon source
[Ref.: #29398]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #120478]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #29398]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29398]	catalase	+	1.11.1.6
[Ref.: #120478]	catalase	+	1.11.1.6
[Ref.: #120478]	oxidase	-
[Ref.: #29398]	urease	+	3.5.1.5
[Ref.: #120478]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16810]	Sample type/isolated from	Korean traditional fermented seafood (jeotgal)
[Ref.: #16810]	Country	Republic of Korea
[Ref.: #16810]	Country ISO 3 Code	KOR
[Ref.: #16810]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Jeotgal, Korean traditional fermented seafood
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From Jeotgal, fermented shellfisg
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #120478]	Sample type/isolated from	Food, Jeotgal, Korean traditional fermented seafood
[Ref.: #120478]	Country	Republic of Korea
[Ref.: #120478]	Country ISO 3 Code	KOR
[Ref.: #120478]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Seafood
#Engineered	#Food production	#Fermented

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ607312 (>99% sequence identity) for Rothia koreensis subclade from Microbeatlas

Aquatic Samples	2113
Soil Samples	6450
Animal Samples	10983
Plant Samples	1908
Total Samples	21454

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16810]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120478]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16810]	Kocuria koreensis strain P31 16S ribosomal RNA gene, partial sequence	FJ607312	1497	ENA	592378 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rothia koreensis JCM 15915	GCA_004136575	contig	GenBank	592378 tax ID
[Ref.: #67770]	Rothia koreensis JCM 15915	GCA_009734705	scaffold	GenBank	592378 tax ID
[Ref.: #66792]	Kocuria koreensis strain JCM 15915	592378.4	wgs	PATRIC	592378 tax ID	*
[Ref.: #66792]	Kocuria koreensis strain JCM 15915	592378.3	wgs	PATRIC	592378 tax ID	*
[Ref.: #66792]	Rothia koreensis JCM 15915	2865618284	draft	JGI IMG/M	592378 tax ID	*

[Ref.: #16810]	GC-content	65.2 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #29398]	GC-content	65.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rothia koreensis JCM 15915 NCBI: GCA_009734705.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kocuria koreensis strain JCM 15915 PATRIC: 592378.4
[Ref.: #69480]	gram-positive	yes	95.481	yes
[Ref.: #69480]	anaerobic	no	99.534	yes
[Ref.: #69480]	halophile	yes	75.348	no
[Ref.: #69480]	spore-forming	no	90.077	no
[Ref.: #69480]	glucose-util	yes	87.229	no
[Ref.: #69480]	thermophile	no	96.874	yes
[Ref.: #69480]	flagellated	no	97.61	yes
[Ref.: #69480]	aerobic	yes	88.844	yes
[Ref.: #69480]	motile	no	93.343	yes
[Ref.: #69480]	glucose-ferment	no	72.046	no

Availability in culture collections External links

[Ref.: #16810]

Culture collection no.

DSM 23367, JCM 15915, KCTC 19595, CIP 110210

[Ref.: #77108]

SI-ID 366445

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kocuria uropygioeca sp. nov. and Kocuria uropygialis sp. nov., isolated from the preen glands of Great Spotted Woodpeckers (Dendrocopos major).	Braun MS, Wang E, Zimmermann S, Boutin S, Wink M	Syst Appl Microbiol	10.1016/j.syapm.2017.09.005	2017	*
Phylogeny	Kocuria koreensis sp. nov., isolated from fermented seafood.	Park EJ, Roh SW, Kim MS, Jung MJ, Shin KS, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.012310-0	2009	*
Phylogeny	Rothia santali sp. nov., endophytic bacteria isolated from sandalwood (Santalum album L.) seedling.	Tuikhar N, Kirdat K, Nair G, Padma S, Thorat V, Swetha P, Sathe S, Sundararaj R, Yadav A	Arch Microbiol	10.1007/s00203-022-03237-6	2022	*

References

#16810

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23367

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29398

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25805 (see below)

#40417 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77108

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID366445.1 )

#120478 Collection of Institut Pasteur ; Curators of the CIP; CIP 110210

#25805

IJSEM 140 2010 ( DOI 10.1099/ijs.0.012310-0 , PubMed 19648328 )

* These data were automatically processed and therefore are not curated

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Rothia koreensis JCM 15915

Kocuria koreensis strain JCM 15915

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