Name: Kocuria turfanensis HO-9042
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7663

Type strain:

Species: Kocuria turfanensis

Strain Designation: HO-9042

Culture col. no.: DSM 22143, CCTCC AB 206107, KCTC 19307, JCM 15622, NBRC 107627

Strain history: <- X Luo, CCTCC, China

NCBI tax ID(s): 388357 (species)

SI-ID 402036

DSM 22143

Section

Kocuria turfanensis HO-9042 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from air.

coccus-shaped
Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Kocuria*
	Species	**Kocuria turfanensis**
	Full Scientific Name (LPSN)	Kocuria turfanensis Zhou et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32328]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #32328]	Cell shape	coccus-shaped

[Ref.: #32328]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %95.174

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16162]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #16162]

Culture medium growth

[Ref.: #16162]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16162]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16162]	growth	28 °C
[Ref.: #32328]	growth	30-40 °C
[Ref.: #67770]	growth	35 °C
[Ref.: #67771]	growth	35 °C

[Ref.: #16162]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32328]			growth	6.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32328]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.995

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32328]		NaCl		growth	0-15	%

[Ref.: #67770]	Observation	quinones: MK-8(H₂), MK-9(H₂), MK-7(H₂)
[Ref.: #67771]	Observation	quinones: MK-8(H2), MK-9(H2)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32328]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #32328]	galactose ChEBI	+	carbon source
[Ref.: #32328]	inosine ChEBI	+	carbon source
[Ref.: #32328]	mannitol ChEBI	+	carbon source
[Ref.: #32328]	melibiose ChEBI	+	carbon source
[Ref.: #32328]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #32328]	myo-inositol ChEBI	+	carbon source
[Ref.: #32328]	nitrate ChEBI	+	reduction
[Ref.: #32328]	raffinose ChEBI	+	carbon source
[Ref.: #32328]	trehalose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32328]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16162]	Sample type/isolated from	air
[Ref.: #16162]	Geographic location (country and/or sea, region)	Xinjiang
[Ref.: #16162]	Country	China
[Ref.: #16162]	Country ISO 3 Code	CHN
[Ref.: #16162]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Air
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xinjiang
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From air
[Ref.: #67771]	Geographic location (country and/or sea, region)	Xinjiang
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Air

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ531634 (>99% sequence identity) for Kocuria from Microbeatlas

Aquatic Samples	42
Soil Samples	69
Animal Samples	266
Plant Samples	1
Total Samples	378

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16162]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16162]	Kocuria turfanensis strain HO-9042 16S ribosomal RNA gene, partial sequence	DQ531634	1441	ENA	388357 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kocuria turfanensis HO-9042	GCA_001580365	chromosome	GenBank	388357 tax ID	*
[Ref.: #66792]	Kocuria turfanensis NBRC 107627	GCA_007992155	contig	GenBank	388357 tax ID	*
[Ref.: #66792]	Kocuria turfanensis strain NBRC 107627	388357.9	wgs	PATRIC	388357 tax ID	*
[Ref.: #66792]	Kocuria turfanensis HO-9042	2687453620	complete	JGI IMG/M	388357 tax ID	*

[Ref.: #16162]	GC-content	65.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32328]	GC-content	65 mol%
[Ref.: #67770]	GC-content	72.8 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	65 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	65.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Kocuria turfanensis HO-9042 NCBI: GCA_001580365.1
[Ref.: #69481]	spore-forming	no	79	no

Availability in culture collections External links

[Ref.: #16162]

Culture collection no.

DSM 22143, CCTCC AB 206107, KCTC 19307, JCM 15622, NBRC 107627

[Ref.: #77107]

SI-ID 402036

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kocuria salina sp. nov., an actinobacterium isolated from the rhizosphere of the halophyte Arthrocnemum macrostachyum and emended description of Kocuria turfanensis.	Camacho M, Redondo-Gomez S, Rodriguez-Llorente I, Rohde M, Sproer C, Schumann P, Klenk HP, Montero-Calasanz MDC	Int J Syst Evol Microbiol	10.1099/ijsem.0.002401	2017	*
Phylogeny	Kocuria oceani sp. nov., isolated from a deep-sea hydrothermal plume.	Zhang L, Xi L, Ruan J, Huang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.001599	2017	*
Genetics	Genome sequencing and annotation of Kocuria turfanensis HO-9042, to promote explorating high-salt resistance associated gene resources.	Dai J, Yu C, Huang Z, Fan M, Jia Z, Li X, Wang Z, Li Z, Yao J, Li P, Zheng G, Chen X	J Biotechnol	10.1016/j.jbiotec.2016.03.013	2016	*
Phylogeny	Kocuria dechangensis sp. nov., an actinobacterium isolated from saline and alkaline soils.	Wang K, Zhang L, Liu Y, Pan Y, Meng L, Xu T, Zhang C, Liu H, Hong S, Huang H, Jiang J	Int J Syst Evol Microbiol	10.1099/ijs.0.000372	2015	*
Phylogeny	Kocuria flava sp. nov. and Kocuria turfanensis sp. nov., airborne actinobacteria isolated from Xinjiang, China.	Zhou G, Luo X, Tang Y, Zhang L, Yang Q, Qiu Y, Fang C	Int J Syst Evol Microbiol	10.1099/ijs.0.65323-0	2008	*

References

#16162

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22143

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32328

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28562 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77107

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402036.1 )

#28562

IJSEM 1304 2008 ( DOI 10.1099/ijs.0.65323-0 , PubMed 18523169 )

* These data were automatically processed and therefore are not curated

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