Name: Arthrobacter cryoconiti Cr6-08
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7629

Type strain:

Species: Arthrobacter cryoconiti

Strain Designation: Cr6-08

Culture col. no.: DSM 23324, CGMCC 1.10698, CIP 110638, LMG 26052, JCM 18953

Strain history: LMG 26052 <-- R. Margesin Cr6-08.

NCBI tax ID(s): 748907 (species)

Section

Arthrobacter cryoconiti Cr6-08 is an aerobe, psychrophilic, Gram-positive bacterium that was isolated from alpine glacier cryoconite.

Gram-positive
ovoid-shaped
aerobe
psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	25-08-2022 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Actinomycetota
	Class	Actinomycetes
	Order	Micrococcales
	Family	Micrococcaceae
	Genus	Arthrobacter
	Species	Arthrobacter cryoconiti
	Full Scientific Name (PNU)	Arthrobacter cryoconiti Margesin et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30223]	Gram stain	positive
[Ref.: #30223]	Cell length	0.8-1.8 µm
[Ref.: #30223]	Cell width	0.5-0.7 µm
[Ref.: #30223]	Cell shape	ovoid-shaped

[Ref.: #30223]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16555]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #16555]

Culture medium growth

[Ref.: #16555]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16555]

Culture medium composition

expand / minimize

[Ref.: #36194]

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

[Ref.: #36194]

Culture medium growth

[Ref.: #36194]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16555]	growth	20 °C
[Ref.: #30223]	growth	1-25 °C
[Ref.: #36194]	growth	20 °C
[Ref.: #67770]	growth	22 °C

[Ref.: #16555]	Temperature range	psychrophilic
[Ref.: #36194]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #30223]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30223]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30223]		NaCl		growth	0-3	%

[Ref.: #67770]

Observation

quinones: MK-9(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30223]	esculin ChEBI	+	hydrolysis
[Ref.: #30223]	glucose ChEBI	+	carbon source
[Ref.: #30223]	lactose ChEBI	+	carbon source
[Ref.: #30223]	malate ChEBI	+	carbon source
[Ref.: #30223]	maltose ChEBI	+	carbon source
[Ref.: #30223]	mannitol ChEBI	+	carbon source
[Ref.: #30223]	mannose ChEBI	+	carbon source
[Ref.: #30223]	nitrate ChEBI	+	reduction
[Ref.: #30223]	phenylacetate ChEBI	+	carbon source
[Ref.: #30223]	sodium citrate ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30223]	acid phosphatase	+	3.1.3.2
[Ref.: #30223]	alpha-galactosidase	+	3.2.1.22
[Ref.: #30223]	catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16555]	Sample type/isolated from	alpine glacier cryoconite
[Ref.: #16555]	Geographic location (country and/or sea, region)	Ötztaler Alps, Banker glacier, 2820 m above sea level
[Ref.: #16555]	Country	Austria
[Ref.: #16555]	Country ISO 3 Code	AUT
[Ref.: #16555]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Banker glacier at an altitude of 2,820 m
[Ref.: #67770]	Geographic location (country and/or sea, region)	Ötztal Alps
[Ref.: #67770]	Country	Austria
[Ref.: #67770]	Country ISO 3 Code	AUT
[Ref.: #67770]	Continent	Europe

Isolation sources categories

#Environmental	#Terrestrial	#Glacier
#Condition	#Psychrophilic (<10°C)	-
#Climate	#Cold	#Alpine
#Environmental	#Terrestrial	#Geologic

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16555]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16555]	Arthrobacter cryoconiti strain Cr6-08 16S ribosomal RNA gene, partial sequence	GU784867	1526	ENA	748907 tax ID

[Ref.: #16555]	GC-content	57.3 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #30223]	GC-content	57.3 mol%

Availability in culture collections External links

[Ref.: #16555]

Culture collection no.

DSM 23324, CGMCC 1.10698, CIP 110638, LMG 26052, JCM 18953

[Ref.: #20218]

Associated Passport(s) in StrainInfo

869062, 869061, 856270

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arthrobacter cryoconiti sp. nov., a psychrophilic bacterium isolated from alpine glacier cryoconite.	Margesin R, Schumann P, Zhang DC, Redzic M, Zhou YG, Liu HC, Schinner F	Int J Syst Evol Microbiol	10.1099/ijs.0.031138-0	2011	*
Phylogeny	Arthrobacter dokdonellae sp. nov., isolated from a plant of the genus Campanula.	Koh HW, Kang MS, Lee KE, Lee EY, Kim H, Park SJ	J Microbiol	10.1007/s12275-019-8540-x	2019	*

References

#16555

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23324

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#30223

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26566 (see below)

#36194 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#26566

IJSEM 397 2012 ( DOI 10.1099/ijs.0.031138-0 , PubMed 21441372 )

* These data were automatically processed and therefore are not curated

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