Name: Pseudarthrobacter equi DSM 23395
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7628

Type strain:

Species: Pseudarthrobacter equi

Culture col. no.: DSM 23395, CCUG 59597, IMMIB L-1606, JCM 19107

Strain history: CCUG 59597 <-- A. F. Yassin IMMIB L-1606.

NCBI tax ID(s): 728066 (species)

SI-ID 400475

DSM 23395, CCUG 59597

Special Collections

Section

Pseudarthrobacter equi DSM 23395 is an aerobe, Gram-positive bacterium that was isolated from genital swab from a horse.

Gram-positive
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Pseudarthrobacter*
	Species	**Pseudarthrobacter equi**
	Full Scientific Name (LPSN)	Pseudarthrobacter equi (Yassin et al. 2011) Busse 2016

Synonym

Arthrobacter equi

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %91.531

[Ref.: #69480]	Motility	no Confidence in %91

[Ref.: #69231]	Colony color	Beige (1001)
[Ref.: #69231]	Cultivation medium used	suter with tyrosine

[Ref.: #69231]	Colony color	Ivory (1014)
[Ref.: #69231]	Cultivation medium used	ISP 4

[Ref.: #69231]	Colony color	Light ivory (1015)
[Ref.: #69231]	Cultivation medium used	ISP 2

[Ref.: #69231]	Colony color	Light ivory (1015)
[Ref.: #69231]	Cultivation medium used	ISP 3

[Ref.: #69231]	Colony color	Light ivory (1015)
[Ref.: #69231]	Cultivation medium used	ISP 5

[Ref.: #69231]	Colony color	Light ivory (1015)
[Ref.: #69231]	Cultivation medium used	ISP 6

[Ref.: #69231]	Colony color	Light ivory (1015)
[Ref.: #69231]	Cultivation medium used	suter without tyrosine

[Ref.: #69231]	Colony color	Telegrey 4 (7047)
[Ref.: #69231]	Cultivation medium used	ISP 7

[Ref.: #69231]	Pigment production	yes
[Ref.: #69231]	Pigment name	Melanin
[Ref.: #69231]	Pigment production	yes
[Ref.: #69231]	Pigmentation color	Brown beige (1011), sand yellow (1002)
[Ref.: #69231]	Pigment name	soluble pigment

[Ref.: #69231]	Multicellular complex forming ability	no
[Ref.: #69231]	Multicellular complex name	Aerial mycelium
[Ref.: #69231]	Medium Name (multicellularity)	ISP 2

[Ref.: #69231]	Multicellular complex forming ability	no
[Ref.: #69231]	Multicellular complex name	Aerial mycelium
[Ref.: #69231]	Medium Name (multicellularity)	ISP 3

[Ref.: #69231]	Multicellular complex forming ability	no
[Ref.: #69231]	Multicellular complex name	Aerial mycelium
[Ref.: #69231]	Medium Name (multicellularity)	ISP 4

[Ref.: #69231]	Multicellular complex forming ability	no
[Ref.: #69231]	Multicellular complex name	Aerial mycelium
[Ref.: #69231]	Medium Name (multicellularity)	ISP 5

[Ref.: #69231]	Multicellular complex forming ability	no
[Ref.: #69231]	Multicellular complex name	Aerial mycelium
[Ref.: #69231]	Medium Name (multicellularity)	ISP 6

[Ref.: #69231]	Multicellular complex forming ability	no
[Ref.: #69231]	Multicellular complex name	Aerial mycelium
[Ref.: #69231]	Medium Name (multicellularity)	ISP 7

[Ref.: #69231]	Multicellular complex forming ability	no
[Ref.: #69231]	Multicellular complex name	Aerial mycelium
[Ref.: #69231]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69231]	Multicellular complex forming ability	no
[Ref.: #69231]	Multicellular complex name	Aerial mycelium
[Ref.: #69231]	Medium Name (multicellularity)	suter without tyrosine

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16830]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #16830]

Culture medium growth

[Ref.: #16830]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16830]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16830]	growth	28 °C
[Ref.: #62028]	growth	30 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #62028]	Oxygen tolerance	aerobe
[Ref.: #69480]	Oxygen tolerance	aerobe Confidence in %91.958

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69231]		NaCl		growth	0-2.5	%

[Ref.: #16830]	Murein short key	A11.23
[Ref.: #16830]	Murein types	A3alpha L-Lys-L-Ser-L-Thr-L-Ala

[Ref.: #67770]

Observation

quinones: MK-9(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69231]	arabinose ChEBI	+	growth
[Ref.: #69231]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69231]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69231]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69231]	inositol ChEBI	+	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69231]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69231]	raffinose ChEBI	+	growth
[Ref.: #69231]	rhamnose ChEBI	+	growth
[Ref.: #69231]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69231]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym, API Coryne
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69231]	3725	-	-	-	-	+	+	+	-	-	+	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69231]	5909	not determinedn.d.	-	+/-	+/-	+/-	+	+/-	+/-	+	-	+/-	+/-	+	+	+	+	+	-	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16830]	Sample type/isolated from	genital swab from a horse
[Ref.: #16830]	Geographic location (country and/or sea, region)	Schleswig-Holstein
[Ref.: #16830]	Country	Germany
[Ref.: #16830]	Country ISO 3 Code	DEU
[Ref.: #16830]	Continent	Europe

[Ref.: #62028]	Sample type/isolated from	Horse,genital swab
[Ref.: #62028]	Sampling date	1996
[Ref.: #62028]	Geographic location (country and/or sea, region)	Schleswig-Holstein
[Ref.: #62028]	Country	Germany
[Ref.: #62028]	Country ISO 3 Code	DEU
[Ref.: #62028]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Genital swab of a horse
[Ref.: #67770]	Geographic location (country and/or sea, region)	Schleswig-Holstein
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Patient	#Swab
#Host	#Mammals	#Equidae (Horse)
#Host Body-Site	#Urogenital tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FN673551 (>99% sequence identity) for Pseudarthrobacter from Microbeatlas

Aquatic Samples	56
Soil Samples	366
Animal Samples	202
Plant Samples	99
Total Samples	723

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16830]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16830]	Arthrobacter equi partial 16S rRNA gene, strain IMMIB L-1606	FN673551	1487	GenBank ENA	728066 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudarthrobacter equi IMMIB L-1606	GCA_900105535	chromosome	GenBank ENA	728066 tax ID
[Ref.: #66792]	Pseudarthrobacter equi strain IMMIB L-1606	728066.4	complete	PATRIC	728066 tax ID	*
[Ref.: #66792]	Pseudarthrobacter equi DSM 23395	2634166282	draft	JGI IMG/M	728066 tax ID	*

[Ref.: #16830]	GC-content	67.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	67 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudarthrobacter equi strain IMMIB L-1606 PATRIC: 728066.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	72	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudarthrobacter equi strain IMMIB L-1606 PATRIC: 728066.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.531	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.903	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	59.353	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	91.958	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91	no

Availability in culture collections External links

[Ref.: #16830]

Culture collection no.

DSM 23395, CCUG 59597, IMMIB L-1606, JCM 19107

[Ref.: #77072]

SI-ID 400475

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arthrobacter enclensis sp. nov., isolated from sediment sample.	Dastager SG, Liu Q, Tang SK, Krishnamurthi S, Lee JC, Li WJ	Arch Microbiol	10.1007/s00203-014-1016-9	2014	*
Phylogeny	Arthrobacter equi sp. nov., isolated from veterinary clinical material.	Yassin AF, Sproer C, Siering C, Hupfer H, Schumann P	Int J Syst Evol Microbiol	10.1099/ijs.0.026690-0	2010	*

References

#16830

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23395

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#62028 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59597

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69231

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77072

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400475.1 )

* These data were automatically processed and therefore are not curated

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Pseudarthrobacter equi strain IMMIB L-1606

Pseudarthrobacter equi strain IMMIB L-1606

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