Strain identifier

BacDive ID: 7628

Type strain: Yes

Species: Pseudarthrobacter equi

Strain history: CCUG 59597 <-- A. F. Yassin IMMIB L-1606.

NCBI tax ID(s): 728066 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16830

BacDive-ID: 7628

DSM-Number: 23395

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic

description: Pseudarthrobacter equi DSM 23395 is an aerobe, mesophilic bacterium that was isolated from genital swab from a horse.

NCBI tax id

  • NCBI tax id: 728066
  • Matching level: species

strain history

@refhistory
16830<- A. F. Yassin, Inst. Med. Microbiology, Immunology & Parasitology, Univ. Bonn, Germany
67770CCUG 59597 <-- A. F. Yassin IMMIB L-1606.

doi: 10.13145/bacdive7628.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Pseudarthrobacter
  • species: Pseudarthrobacter equi
  • full scientific name: Pseudarthrobacter equi (Yassin et al. 2011) Busse 2016
  • synonyms

    • @ref: 20215
    • synonym: Arthrobacter equi

@ref: 16830

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Pseudarthrobacter

species: Pseudarthrobacter equi

full scientific name: Pseudarthrobacter equi (Yassin et al. 2011) Busse 2016

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no92.36
69480100positive

colony morphology

@refcolony colormedium used
69231Beige (1001)suter with tyrosine
69231Ivory (1014)ISP 4
69231Light ivory (1015)ISP 2
69231Light ivory (1015)ISP 3
69231Light ivory (1015)ISP 5
69231Light ivory (1015)ISP 6
69231Light ivory (1015)suter without tyrosine
69231Telegrey 4 (7047)ISP 7

multicellular morphology

@refforms multicellular complexcomplex namemedium name
69231noAerial myceliumISP 2
69231noAerial myceliumISP 3
69231noAerial myceliumISP 4
69231noAerial myceliumISP 5
69231noAerial myceliumISP 6
69231noAerial myceliumISP 7
69231noAerial myceliumsuter with tyrosine
69231noAerial myceliumsuter without tyrosine

pigmentation

@refproductionnamecolor
69231yesMelanin
69231yessoluble pigmentBrown beige (1011), sand yellow (1002)

Culture and growth conditions

culture medium

  • @ref: 16830
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16830positivegrowth28mesophilic
62028positivegrowth30mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62028
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.966

halophily

  • @ref: 69231
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-2.5 %

murein

  • @ref: 16830
  • murein short key: A11.23
  • type: A3alpha L-Lys-L-Ser-L-Thr-L-Ala

observation

  • @ref: 67770
  • observation: quinones: MK-9(H2)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6923122599arabinose+growth
6923162968cellulose-growth
6923128757fructose+growth
6923117234glucose+growth
6923117268inositol+growth
6923137684mannose+growth
6923116634raffinose+growth
6923126546rhamnose+growth
6923117992sucrose+growth
6923118222xylose+growth
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea+hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68382alpha-fucosidase+3.2.1.51
68382alpha-mannosidase+3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase+3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382leucine arylamidase+3.4.11.1
68382alkaline phosphatase-3.1.3.1
68379gelatinase-
68379urease+3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase+3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69231----+++--+---------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69231-+/-+/-+/-++/-+/-+-+/-+/-+++++-++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
16830genital swab from a horseSchleswig-HolsteinGermanyDEUEurope
62028Horse,genital swabSchleswig-HolsteinGermanyDEUEurope1996
67770Genital swab of a horseSchleswig-HolsteinGermanyDEUEurope

isolation source categories

Cat1Cat2Cat3
#Infection#Patient#Swab
#Host#Mammals#Equidae (Horse)
#Host Body-Site#Urogenital tract

taxonmaps

  • @ref: 69479
  • File name: preview.99_1761.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_99;97_106;98_115;99_1761&stattab=map
  • Last taxonomy: Pseudarthrobacter
  • 16S sequence: FN673551
  • Sequence Identity:
  • Total samples: 723
  • soil counts: 366
  • aquatic counts: 56
  • animal counts: 202
  • plant counts: 99

Safety information

risk assessment

  • @ref: 16830
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16830
  • description: Arthrobacter equi partial 16S rRNA gene, strain IMMIB L-1606
  • accession: FN673551
  • length: 1487
  • database: ena
  • NCBI tax ID: 728066

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudarthrobacter equi strain IMMIB L-1606728066.4completepatric728066
66792Pseudarthrobacter equi DSM 233952634166282draftimg728066
67770Pseudarthrobacter equi IMMIB L-1606GCA_900105535chromosomencbi728066

GC content

@refGC-contentmethod
1683067.0high performance liquid chromatography (HPLC)
6777067high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno72no
motileno90.289no
flagellatedno96.364no
gram-positiveyes92.085no
anaerobicno99.6yes
aerobicyes96.352yes
halophileno89.654no
spore-formingno83.555no
thermophileno98.848yes
glucose-utilyes87.903yes
glucose-fermentno89.628yes

External links

@ref: 16830

culture collection no.: DSM 23395, CCUG 59597, IMMIB L-1606, JCM 19107

straininfo link

  • @ref: 77072
  • straininfo: 400475

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20870884Arthrobacter equi sp. nov., isolated from veterinary clinical material.Yassin AF, Sproer C, Siering C, Hupfer H, Schumann PInt J Syst Evol Microbiol10.1099/ijs.0.026690-02010Actinomycetales Infections/*microbiology, Animals, Arthrobacter/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Catalase/metabolism, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genitalia/microbiology, Horse Diseases/*microbiology, Horses, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny25052022Arthrobacter enclensis sp. nov., isolated from sediment sample.Dastager SG, Liu Q, Tang SK, Krishnamurthi S, Lee JC, Li WJArch Microbiol10.1007/s00203-014-1016-92014Arthrobacter/chemistry/*classification/genetics, Base Composition, Fatty Acids/analysis, Geologic Sediments/*microbiology, India, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Species SpecificityGenetics

Reference

@idauthorscataloguedoi/urltitle
16830Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23395)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23395
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
62028Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 59597)https://www.ccug.se/strain?id=59597
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69231Wink, J.https://cdn.dsmz.de/wink/DSM%2023395.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
77072Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID400475.1StrainInfo: A central database for resolving microbial strain identifiers