Strain identifier

BacDive ID: 7628

Type strain: Yes

Species: Pseudarthrobacter equi

Strain history: CCUG 59597 <-- A. F. Yassin IMMIB L-1606.

NCBI tax ID(s): 728066 (species)

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General

@ref: 16830

BacDive-ID: 7628

DSM-Number: 23395

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-positive

description: Pseudarthrobacter equi DSM 23395 is an aerobe, Gram-positive bacterium that was isolated from genital swab from a horse.

NCBI tax id

  • NCBI tax id: 728066
  • Matching level: species

strain history

@refhistory
16830<- A. F. Yassin, Inst. Med. Microbiology, Immunology & Parasitology, Univ. Bonn, Germany
67770CCUG 59597 <-- A. F. Yassin IMMIB L-1606.

doi: 10.13145/bacdive7628.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Pseudarthrobacter
  • species: Pseudarthrobacter equi
  • full scientific name: Pseudarthrobacter equi (Yassin et al. 2011) Busse 2016

  • synonyms

    • @ref: 20215
    • synonym: Arthrobacter equi

@ref: 16830

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Pseudarthrobacter

species: Pseudarthrobacter equi

full scientific name: Pseudarthrobacter equi (Yassin et al. 2011) Busse 2016

type strain: yes

Morphology

cell morphology

@refgram stainconfidencemotility
69480positive91.531
6948091no

colony morphology

@refcolony colormedium used
69231Beige (1001)suter with tyrosine
69231Ivory (1014)ISP 4
69231Light ivory (1015)ISP 2
69231Light ivory (1015)ISP 3
69231Light ivory (1015)ISP 5
69231Light ivory (1015)ISP 6
69231Light ivory (1015)suter without tyrosine
69231Telegrey 4 (7047)ISP 7

multicellular morphology

@refforms multicellular complexcomplex namemedium name
69231noAerial myceliumISP 2
69231noAerial myceliumISP 3
69231noAerial myceliumISP 4
69231noAerial myceliumISP 5
69231noAerial myceliumISP 6
69231noAerial myceliumISP 7
69231noAerial myceliumsuter with tyrosine
69231noAerial myceliumsuter without tyrosine

pigmentation

@refproductionnamecolor
69231yesMelanin
69231yessoluble pigmentBrown beige (1011), sand yellow (1002)

Culture and growth conditions

culture medium

  • @ref: 16830
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
16830positivegrowth28
62028positivegrowth30
67770positivegrowth28

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
62028aerobe
69480aerobe91.958

halophily

  • @ref: 69231
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-2.5 %

murein

  • @ref: 16830
  • murein short key: A11.23
  • type: A3alpha L-Lys-L-Ser-L-Thr-L-Ala

observation

  • @ref: 67770
  • observation: quinones: MK-9(H2)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6923122599arabinose+growth
6923162968cellulose-growth
6923128757fructose+growth
6923117234glucose+growth
6923117268inositol+growth
6923137684mannose+growth
6923116634raffinose+growth
6923126546rhamnose+growth
6923117992sucrose+growth
6923118222xylose+growth
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea+hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68382alpha-fucosidase+3.2.1.51
68382alpha-mannosidase+3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase+3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382leucine arylamidase+3.4.11.1
68382alkaline phosphatase-3.1.3.1
68379gelatinase-
68379urease+3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase+3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69231----+++--+---------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69231-+/-+/-+/-++/-+/-+-+/-+/-+++++-++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
16830genital swab from a horseSchleswig-HolsteinGermanyDEUEurope
62028Horse,genital swabSchleswig-HolsteinGermanyDEUEurope1996
67770Genital swab of a horseSchleswig-HolsteinGermanyDEUEurope

isolation source categories

Cat1Cat2Cat3
#Infection#Patient#Swab
#Host#Mammals#Equidae (Horse)
#Host Body-Site#Urogenital tract

taxonmaps

  • @ref: 69479
  • File name: preview.99_1761.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_99;97_106;98_115;99_1761&stattab=map
  • Last taxonomy: Pseudarthrobacter
  • 16S sequence: FN673551
  • Sequence Identity:
  • Total samples: 723
  • soil counts: 366
  • aquatic counts: 56
  • animal counts: 202
  • plant counts: 99

Safety information

risk assessment

  • @ref: 16830
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16830
  • description: Arthrobacter equi partial 16S rRNA gene, strain IMMIB L-1606
  • accession: FN673551
  • length: 1487
  • database: nuccore
  • NCBI tax ID: 728066

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudarthrobacter equi strain IMMIB L-1606728066.4completepatric728066
66792Pseudarthrobacter equi DSM 233952634166282draftimg728066
67770Pseudarthrobacter equi IMMIB L-1606GCA_900105535chromosomencbi728066

GC content

@refGC-contentmethod
1683067.0high performance liquid chromatography (HPLC)
6777067high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno72no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes91.531no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no98.903yes
69480spore-formingspore-formingAbility to form endo- or exosporesno59.353no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes91.958yes
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno98yes
69480flagellatedmotile2+Ability to perform flagellated movementno91no

External links

@ref: 16830

culture collection no.: DSM 23395, CCUG 59597, IMMIB L-1606, JCM 19107

straininfo link

  • @ref: 77072
  • straininfo: 400475

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20870884Arthrobacter equi sp. nov., isolated from veterinary clinical material.Yassin AF, Sproer C, Siering C, Hupfer H, Schumann PInt J Syst Evol Microbiol10.1099/ijs.0.026690-02010Actinomycetales Infections/*microbiology, Animals, Arthrobacter/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Catalase/metabolism, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genitalia/microbiology, Horse Diseases/*microbiology, Horses, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny25052022Arthrobacter enclensis sp. nov., isolated from sediment sample.Dastager SG, Liu Q, Tang SK, Krishnamurthi S, Lee JC, Li WJArch Microbiol10.1007/s00203-014-1016-92014Arthrobacter/chemistry/*classification/genetics, Base Composition, Fatty Acids/analysis, Geologic Sediments/*microbiology, India, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Species SpecificityGenetics

Reference

@idauthorscataloguedoi/urltitle
16830Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23395)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23395
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
62028Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 59597)https://www.ccug.se/strain?id=59597
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69231Wink, J.https://cdn.dsmz.de/wink/DSM%2023395.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77072Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID400475.1StrainInfo: A central database for resolving microbial strain identifiers