Name: Glutamicibacter arilaitensis Re117
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7602

Type strain:

Species: Glutamicibacter arilaitensis

Strain Designation: Re117

Culture col. no.: DSM 16368, CIP 108037, JCM 13566, IAM 15318, NCIMB 14258, VTT E-072719

Strain history: CIP <- 2003, F. Irlinger, INRA, Thiverval Grignon, France: strain Re117 <- UMR GMPA, INRA <- Soredab

NCBI tax ID(s): 256701 (species)

SI-ID 128534

CIP 108037, DSM 16368, JCM 13566, IAM 15318, VTT E-072719

Section

Glutamicibacter arilaitensis Re117 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from Reblochon cheese.

Gram-positive
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Glutamicibacter*
	Species	**Glutamicibacter arilaitensis**
	Full Scientific Name (LPSN)	Glutamicibacter arilaitensis (Irlinger et al. 2005) Busse 2016

Synonym

Arthrobacter arilaitensis

Information on morphological and physiological properties Morphology

[Ref.: #116496]	Gram stain	positive

[Ref.: #116496]	Cell shape	rod-shaped

[Ref.: #116496]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6406]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #6406]

Culture medium growth

[Ref.: #6406]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6406]

Culture medium composition

expand / minimize

[Ref.: #41909]

Culture medium

MEDIUM 29- Brain heart agar

[Ref.: #41909]

Culture medium growth

[Ref.: #41909]

Culture medium composition

expand / minimize

[Ref.: #116496]

Culture medium

CIP Medium 72

[Ref.: #116496]

Culture medium growth

[Ref.: #116496]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #116496]

Culture medium

CIP Medium 29

[Ref.: #116496]

Culture medium growth

[Ref.: #116496]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6406]		growth	28 °C
[Ref.: #41909]		growth	30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #116496]		growth	10-30 °C
[Ref.: #116496]	no	growth	37 °C
[Ref.: #116496]	no	growth	41 °C
[Ref.: #116496]	no	growth	45 °C

[Ref.: #6406]	Temperature range	mesophilic
[Ref.: #41909]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #116496]	Temperature range	mesophilic
[Ref.: #116496]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #116496]

Oxygen tolerance

obligate aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #116496]	NaCl		growth	2-4	%
[Ref.: #116496]	NaCl	no	growth	0	%
[Ref.: #116496]	NaCl	no	growth	6	%
[Ref.: #116496]	NaCl	no	growth	8	%
[Ref.: #116496]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116496]	citrate ChEBI	-	carbon source
[Ref.: #116496]	esculin ChEBI	-	hydrolysis
[Ref.: #116496]	hippurate ChEBI	+	hydrolysis
[Ref.: #116496]	nitrate ChEBI	-	reduction
[Ref.: #116496]	nitrate ChEBI	-	respiration
[Ref.: #116496]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #116496]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #116496]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #116496]		acetoin ChEBI	-
[Ref.: #116496]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #116496]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #116496]	amylase	+
[Ref.: #116496]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116496]	caseinase	+	3.4.21.50
[Ref.: #116496]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #116496]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #116496]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #116496]	gelatinase	+/-
[Ref.: #116496]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #116496]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116496]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116496]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116496]	oxidase	-
[Ref.: #116496]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #116496]	protease	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #116496]	tryptophan deaminase	-
[Ref.: #116496]	tween esterase	-
[Ref.: #116496]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #116496]	2553	not determinedn.d.	+	-	-	+	-	-	-	+	-	+	+	+	-	+	-	+	+	-	+	+	+	+	-	-	-	-	+	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+	+	-	+	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116496]	10835	-	-	+	-	-	+	+	-	+	-	-	+	-	-	-	+	-	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6406]	Sample type/isolated from	Reblochon cheese
[Ref.: #6406]	Country	France
[Ref.: #6406]	Country ISO 3 Code	FRA
[Ref.: #6406]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Surface of Reblochon cheese

[Ref.: #116496]	Sample type/isolated from	Food, Cheese, Reblochon
[Ref.: #116496]	Country	France
[Ref.: #116496]	Country ISO 3 Code	FRA
[Ref.: #116496]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Dairy product

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ609628 (>99% sequence identity) for Glutamicibacter from Microbeatlas

Aquatic Samples	149
Soil Samples	92
Animal Samples	507
Plant Samples	69
Total Samples	817

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6406]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116496]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6406]	Arthrobacter arilaiti partial 16S rRNA gene, strain CIP 108037	AJ609628	1459	ENA	861360 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Glutamicibacter arilaitensis Re117	GCA_000197735	complete	GenBank	861360 tax ID	*
[Ref.: #66792]	Glutamicibacter arilaitensis Re117	861360.22	plasmid	PATRIC	861360 tax ID	*
[Ref.: #66792]	Glutamicibacter arilaitensis Re117	861360.23	plasmid	PATRIC	861360 tax ID	*
[Ref.: #66792]	Glutamicibacter arilaitensis re117	649633006	complete	JGI IMG/M	861360 tax ID	*

[Ref.: #67770]	GC-content	59.2 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	59.3 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Glutamicibacter arilaitensis Re117 Re117 NCBI: GCA_000197735.1
[Ref.: #69480]	motile	no	95.356	no
[Ref.: #69480]	flagellated	no	96.431	no
[Ref.: #69480]	gram-positive	yes	93.499	no
[Ref.: #69480]	anaerobic	no	99.373	no
[Ref.: #69480]	aerobic	yes	95.962	no
[Ref.: #69480]	halophile	no	52.789	no
[Ref.: #69480]	spore-forming	no	87.643	no
[Ref.: #69480]	thermophile	no	98.627	no
[Ref.: #69480]	glucose-util	yes	86.581	no
[Ref.: #69480]	glucose-ferment	no	87.738	no

Availability in culture collections External links

[Ref.: #6406]

Culture collection no.

DSM 16368, CIP 108037, JCM 13566, IAM 15318, NCIMB 14258, VTT E-072719

[Ref.: #77046]

SI-ID 128534

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Growth of aerobic ripening bacteria at the cheese surface is limited by the availability of iron.	Monnet C, Back A, Irlinger F	Appl Environ Microbiol	10.1128/AEM.00085-12	2012	*
Genetics	The arthrobacter arilaitensis Re117 genome sequence reveals its genetic adaptation to the surface of cheese.	Monnet C, Loux V, Gibrat JF, Spinnler E, Barbe V, Vacherie B, Gavory F, Gourbeyre E, Siguier P, Chandler M, Elleuch R, Irlinger F, Vallaeys T	PLoS One	10.1371/journal.pone.0015489	2010	*
Phylogeny	Arthrobacter bergerei sp. nov. and Arthrobacter arilaitensis sp. nov., novel coryneform species isolated from the surfaces of cheeses.	Irlinger F, Bimet F, Delettre J, Lefevre M, Grimont PAD	Int J Syst Evol Microbiol	10.1099/ijs.0.63125-0	2005	*

References

#6406

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16368

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#41909 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#77046

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID128534.1 )

#116496 Collection of Institut Pasteur ; Curators of the CIP; CIP 108037
* These data were automatically processed and therefore are not curated

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Glutamicibacter arilaitensis Re117 Re117

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