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Strain identifier

BacDive ID: 7602

Type strain: Yes

Species: Glutamicibacter arilaitensis

Strain Designation: Re117

Strain history: CIP 108037 <-- F. Irlinger Re117.

NCBI tax ID(s): 256701 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6406

BacDive-ID: 7602

DSM-Number: 16368

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Glutamicibacter arilaitensis Re117 is a mesophilic bacterium that was isolated from Reblochon cheese.

NCBI tax id

  • NCBI tax id: 256701
  • Matching level: species

strain history

doi: 10.13145/bacdive7602.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Glutamicibacter
  • species: Glutamicibacter arilaitensis
  • full scientific name: Glutamicibacter arilaitensis (Irlinger et al. 2005) Busse 2016
  • synonyms

    • @ref: 20215
    • synonym: Arthrobacter arilaitensis

@ref: 6406

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Glutamicibacter

species: Glutamicibacter arilaitensis

full scientific name: Glutamicibacter arilaitensis (Irlinger et al. 2005) Busse 2016 emend. Nouioui et al. 2018

strain designation: Re117

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6406TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
41909MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)

culture temp

@refgrowthtypetemperaturerange
6406positivegrowth28mesophilic
41909positivegrowth30mesophilic
67770positivegrowth28mesophilic

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
6406Reblochon cheeseFranceFRAEurope
67770Surface of Reblochon cheese

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Dairy product

taxonmaps

  • @ref: 69479
  • File name: preview.99_7437.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_1446;97_1726;98_2111;99_7437&stattab=map
  • Last taxonomy: Glutamicibacter
  • 16S sequence: AJ609628
  • Sequence Identity:
  • Total samples: 817
  • soil counts: 92
  • aquatic counts: 149
  • animal counts: 507
  • plant counts: 69

Safety information

risk assessment

  • @ref: 6406
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6406
  • description: Arthrobacter arilaiti partial 16S rRNA gene, strain CIP 108037
  • accession: AJ609628
  • length: 1459
  • database: ena
  • NCBI tax ID: 861360

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Glutamicibacter arilaitensis Re117 Re117GCA_000197735completencbi861360
66792Glutamicibacter arilaitensis Re117861360.22plasmidpatric861360
66792Glutamicibacter arilaitensis Re117861360.23plasmidpatric861360
66792Glutamicibacter arilaitensis re117649633006completeimg861360
67770Arthrobacter arilaitensis RE117 chromosome, complete sequenceFQ311875ena861360
66792Acidobacteria bacterium F1-120-MAGs188GCA_005778535contigpatric1978231
66792Candidatus Saccharibacteria bacterium RGIG7523GCA_017557805contigpatric2026720

GC content

@refGC-contentmethod
6777059.2genome sequence analysis
6777059.3genome sequence analysis

External links

@ref: 6406

culture collection no.: DSM 16368, CIP 108037, JCM 13566, IAM 15318, NCIMB 14258, VTT E-072719

straininfo link

@refpassport
20218http://www.straininfo.net/strains/382654
20218http://www.straininfo.net/strains/373334

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15653918Arthrobacter bergerei sp. nov. and Arthrobacter arilaitensis sp. nov., novel coryneform species isolated from the surfaces of cheeses.Irlinger F, Bimet F, Delettre J, Lefevre M, Grimont PADInt J Syst Evol Microbiol10.1099/ijs.0.63125-02005Arthrobacter/chemistry/*classification/genetics/*isolation & purification, Bacterial Typing Techniques, Cheese/*microbiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Genetics21124797The arthrobacter arilaitensis Re117 genome sequence reveals its genetic adaptation to the surface of cheese.Monnet C, Loux V, Gibrat JF, Spinnler E, Barbe V, Vacherie B, Gavory F, Gourbeyre E, Siguier P, Chandler M, Elleuch R, Irlinger F, Vallaeys TPLoS One10.1371/journal.pone.00154892010Adaptation, Physiological/drug effects/*genetics, Amino Acids/metabolism, Arthrobacter/classification/*genetics/metabolism, Carbon/metabolism, *Cheese, Chromosome Mapping, Chromosomes, Bacterial/genetics, DNA, Bacterial/chemistry/*genetics, Fatty Acids/metabolism, Genome, Bacterial/*genetics, Genomics/methods, Iron/metabolism/pharmacology, Molecular Sequence Data, Salt Tolerance/genetics, Sequence Analysis, DNA, Species Specificity, SyntenyMetabolism
Metabolism22367081Growth of aerobic ripening bacteria at the cheese surface is limited by the availability of iron.Monnet C, Back A, Irlinger FAppl Environ Microbiol10.1128/AEM.00085-122012Arthrobacter/*growth & development/metabolism, Bacteria, Aerobic/*growth & development/metabolism, Biosynthetic Pathways/genetics, Brevibacterium/*growth & development/metabolism, Cheese/*microbiology, Corynebacterium/*growth & development/metabolism, Deferoxamine/metabolism, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Iron/*metabolism, Membrane Transport Proteins/biosynthesis, Real-Time Polymerase Chain Reaction, Reverse Transcriptase Polymerase Chain Reaction, Transcription, Genetic

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6406Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16368)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16368
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41909Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5615
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta