Strain identifier
BacDive ID: 7602
Type strain: 
Species: Glutamicibacter arilaitensis
Strain Designation: Re117
Strain history: CIP 108037 <-- F. Irlinger Re117.
NCBI tax ID(s): 256701 (species)
version 7.1 (current version)
General
@ref: 6406
BacDive-ID: 7602
DSM-Number: 16368
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Glutamicibacter arilaitensis Re117 is a mesophilic bacterium that was isolated from Reblochon cheese.
NCBI tax id
- NCBI tax id: 256701
- Matching level: species
strain history
doi: 10.13145/bacdive7602.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Glutamicibacter
- species: Glutamicibacter arilaitensis
- full scientific name: Glutamicibacter arilaitensis (Irlinger et al. 2005) Busse 2016
synonyms
- @ref: 20215
- synonym: Arthrobacter arilaitensis
@ref: 6406
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Glutamicibacter
species: Glutamicibacter arilaitensis
full scientific name: Glutamicibacter arilaitensis (Irlinger et al. 2005) Busse 2016 emend. Nouioui et al. 2018
strain designation: Re117
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 6406 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
| 41909 | MEDIUM 29- Brain heart agar | yes | Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g) |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 6406 | positive | growth | 28 | mesophilic |
| 41909 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 6406 | Reblochon cheese | France | FRA | Europe |
| 67770 | Surface of Reblochon cheese |
isolation source categories
- Cat1: #Engineered
- Cat2: #Food production
- Cat3: #Dairy product
taxonmaps
- @ref: 69479
- File name: preview.99_7437.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_1446;97_1726;98_2111;99_7437&stattab=map
- Last taxonomy: Glutamicibacter
- 16S sequence: AJ609628
- Sequence Identity:
- Total samples: 817
- soil counts: 92
- aquatic counts: 149
- animal counts: 507
- plant counts: 69
Safety information
risk assessment
- @ref: 6406
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6406
- description: Arthrobacter arilaiti partial 16S rRNA gene, strain CIP 108037
- accession: AJ609628
- length: 1459
- database: ena
- NCBI tax ID: 861360
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Glutamicibacter arilaitensis Re117 Re117 | GCA_000197735 | complete | ncbi | 861360 |
| 66792 | Glutamicibacter arilaitensis Re117 | 861360.22 | plasmid | patric | 861360 |
| 66792 | Glutamicibacter arilaitensis Re117 | 861360.23 | plasmid | patric | 861360 |
| 66792 | Glutamicibacter arilaitensis re117 | 649633006 | complete | img | 861360 |
| 67770 | Arthrobacter arilaitensis RE117 chromosome, complete sequence | FQ311875 | ena | 861360 | |
| 66792 | Acidobacteria bacterium F1-120-MAGs188 | GCA_005778535 | contig | patric | 1978231 |
| 66792 | Candidatus Saccharibacteria bacterium RGIG7523 | GCA_017557805 | contig | patric | 2026720 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 67770 | 59.2 | genome sequence analysis |
| 67770 | 59.3 | genome sequence analysis |
External links
@ref: 6406
culture collection no.: DSM 16368, CIP 108037, JCM 13566, IAM 15318, NCIMB 14258, VTT E-072719
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/382654 |
| 20218 | http://www.straininfo.net/strains/373334 |
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15653918 | Arthrobacter bergerei sp. nov. and Arthrobacter arilaitensis sp. nov., novel coryneform species isolated from the surfaces of cheeses. | Irlinger F, Bimet F, Delettre J, Lefevre M, Grimont PAD | Int J Syst Evol Microbiol | 10.1099/ijs.0.63125-0 | 2005 | Arthrobacter/chemistry/*classification/genetics/*isolation & purification, Bacterial Typing Techniques, Cheese/*microbiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
| Genetics | 21124797 | The arthrobacter arilaitensis Re117 genome sequence reveals its genetic adaptation to the surface of cheese. | Monnet C, Loux V, Gibrat JF, Spinnler E, Barbe V, Vacherie B, Gavory F, Gourbeyre E, Siguier P, Chandler M, Elleuch R, Irlinger F, Vallaeys T | PLoS One | 10.1371/journal.pone.0015489 | 2010 | Adaptation, Physiological/drug effects/*genetics, Amino Acids/metabolism, Arthrobacter/classification/*genetics/metabolism, Carbon/metabolism, *Cheese, Chromosome Mapping, Chromosomes, Bacterial/genetics, DNA, Bacterial/chemistry/*genetics, Fatty Acids/metabolism, Genome, Bacterial/*genetics, Genomics/methods, Iron/metabolism/pharmacology, Molecular Sequence Data, Salt Tolerance/genetics, Sequence Analysis, DNA, Species Specificity, Synteny | Metabolism |
| Metabolism | 22367081 | Growth of aerobic ripening bacteria at the cheese surface is limited by the availability of iron. | Monnet C, Back A, Irlinger F | Appl Environ Microbiol | 10.1128/AEM.00085-12 | 2012 | Arthrobacter/*growth & development/metabolism, Bacteria, Aerobic/*growth & development/metabolism, Biosynthetic Pathways/genetics, Brevibacterium/*growth & development/metabolism, Cheese/*microbiology, Corynebacterium/*growth & development/metabolism, Deferoxamine/metabolism, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Iron/*metabolism, Membrane Transport Proteins/biosynthesis, Real-Time Polymerase Chain Reaction, Reverse Transcriptase Polymerase Chain Reaction, Transcription, Genetic |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 6406 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16368) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16368 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 41909 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/5615 | ||||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |