Strain identifier

BacDive ID: 7602

Type strain: Yes

Species: Glutamicibacter arilaitensis

Strain Designation: Re117

Culture col. no.: DSM 16368, CIP 108037

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6406

BacDive-ID: 7602

DSM-Number: 16368

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Glutamicibacter arilaitensis Re117 is a mesophilic bacterium that was isolated from Reblochon cheese.

strain history: <- C. Bizet, CIP <- F. Irlinger, INRA

doi: 10.13145/bacdive7602.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Glutamicibacter
  • species: Glutamicibacter arilaitensis
  • full scientific name: Glutamicibacter arilaitensis (Irlinger et al. 2005) Busse 2016
  • synonyms

    • @ref: 20215
    • synonym: Arthrobacter arilaitensis

@ref: 6406

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Glutamicibacter

species: Glutamicibacter arilaitensis

full scientific name: Glutamicibacter arilaitensis (Irlinger et al. 2005) Busse 2016 emend. Nouioui et al. 2018

strain designation: Re117

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6406TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf
41909MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)

culture temp

@refgrowthtypetemperaturerange
6406positivegrowth28mesophilic
41909positivegrowth30mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 6406
  • sample type: Reblochon cheese
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Dairy product

Safety information

risk assessment

  • @ref: 6406
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6406
  • description: Arthrobacter arilaiti partial 16S rRNA gene, strain CIP 108037
  • accession: AJ609628
  • length: 1459
  • database: ena
  • NCBI tax ID: 861360

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Glutamicibacter arilaitensis LJH19GCA_004525745contigncbi256701
66792Glutamicibacter arilaitensis JB182GCA_002878675contigncbi256701
66792Glutamicibacter arilaitensis strain JB182256701.14wgspatric256701
66792Glutamicibacter arilaitensis strain LJH19256701.15wgspatric256701

External links

@ref: 6406

culture collection no.: DSM 16368, CIP 108037

straininfo link

@refpassport
20218http://www.straininfo.net/strains/382654
20218http://www.straininfo.net/strains/373334

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6406Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16368)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16368
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41909Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5615
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)