Name: Glutamicibacter bergerei Ca106
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7601

Type strain:

Species: Glutamicibacter bergerei

Strain Designation: Ca106

Culture col. no.: DSM 16367, CIP 108036, CCUG 52342, JCM 13567, IAM 15319, NCIMB 14259

Strain history: CIP <- 2003, F. Irlinger, INRA, Thiverval Grignon, France: strain Ca106 <- UMR GMPA, INRA <- Adria Normandie

NCBI tax ID(s): 256702 (species)

SI-ID 128535

CIP 108036, DSM 16367, JCM 13567, IAM 15319, CCUG 52342

Other strains from Glutamicibacter bergerei

G. bergerei CCUG 55840

Section

Glutamicibacter bergerei Ca106 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from camembert cheese.

Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Glutamicibacter*
	Species	**Glutamicibacter bergerei**
	Full Scientific Name (LPSN)	Glutamicibacter bergerei (Irlinger et al. 2005) Busse 2016

Synonym

Arthrobacter bergerei

Information on morphological and physiological properties Morphology

[Ref.: #116790]	Gram stain	positive

[Ref.: #116790]	Cell shape	rod-shaped

[Ref.: #116790]	Motility	no

[Ref.: #18609]	Colony color	Rapeseed yellow (1021)
[Ref.: #18609]	Incubation period	10-14 days
[Ref.: #18609]	Cultivation medium used	ISP 2

[Ref.: #18609]	Colony color	Rapeseed yellow (1021)
[Ref.: #18609]	Incubation period	10-14 days
[Ref.: #18609]	Cultivation medium used	ISP 3

[Ref.: #18609]	Colony color	Rapeseed yellow (1021)
[Ref.: #18609]	Incubation period	10-14 days
[Ref.: #18609]	Cultivation medium used	ISP 4

[Ref.: #18609]	Colony color	Rapeseed yellow (1021)
[Ref.: #18609]	Incubation period	10-14 days
[Ref.: #18609]	Cultivation medium used	ISP 5

[Ref.: #18609]	Colony color	Rapeseed yellow (1021)
[Ref.: #18609]	Incubation period	10-14 days
[Ref.: #18609]	Cultivation medium used	ISP 6

[Ref.: #18609]	Colony color	Rapeseed yellow (1021)
[Ref.: #18609]	Incubation period	10-14 days
[Ref.: #18609]	Cultivation medium used	ISP 7

[Ref.: #18609]	Multicellular complex forming ability	no
[Ref.: #18609]	Medium Name (multicellularity)	ISP 2

[Ref.: #18609]	Multicellular complex forming ability	no
[Ref.: #18609]	Medium Name (multicellularity)	ISP 3

[Ref.: #18609]	Multicellular complex forming ability	no
[Ref.: #18609]	Medium Name (multicellularity)	ISP 4

[Ref.: #18609]	Multicellular complex forming ability	no
[Ref.: #18609]	Medium Name (multicellularity)	ISP 5

[Ref.: #18609]	Multicellular complex forming ability	no
[Ref.: #18609]	Medium Name (multicellularity)	ISP 6

[Ref.: #18609]	Multicellular complex forming ability	no
[Ref.: #18609]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6405]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #6405]

Culture medium growth

[Ref.: #6405]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6405]

Culture medium composition

expand / minimize

[Ref.: #18609]

Culture medium

ISP 2

[Ref.: #18609]

Culture medium growth

[Ref.: #18609]

Culture medium composition

expand / minimize

[Ref.: #18609]

Culture medium

ISP 3

[Ref.: #18609]

Culture medium growth

[Ref.: #18609]

Culture medium composition

expand / minimize

[Ref.: #18609]

Culture medium

ISP 4

[Ref.: #18609]

Culture medium growth

[Ref.: #18609]

Culture medium composition

expand / minimize

[Ref.: #18609]

Culture medium

ISP 5

[Ref.: #18609]

Culture medium growth

[Ref.: #18609]

Culture medium composition

expand / minimize

[Ref.: #18609]

Culture medium

ISP 6

[Ref.: #18609]

Culture medium growth

[Ref.: #18609]

Culture medium composition

expand / minimize

[Ref.: #18609]

Culture medium

ISP 7

[Ref.: #18609]

Culture medium growth

[Ref.: #18609]

Culture medium composition

expand / minimize

[Ref.: #41910]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41910]

Culture medium growth

[Ref.: #41910]

Culture medium composition

expand / minimize

[Ref.: #116790]

Culture medium

CIP Medium 72

[Ref.: #116790]

Culture medium growth

[Ref.: #116790]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6405]		growth	28 °C
[Ref.: #18609]		optimum	28 °C
[Ref.: #41910]		growth	30 °C
[Ref.: #59516]		growth	20-30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #116790]		growth	10-30 °C
[Ref.: #116790]	no	growth	37 °C
[Ref.: #116790]	no	growth	41 °C
[Ref.: #116790]	no	growth	45 °C

[Ref.: #6405]	Temperature range	mesophilic
[Ref.: #18609]	Temperature range	mesophilic
[Ref.: #41910]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #116790]	Temperature range	mesophilic
[Ref.: #116790]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #59516]	Oxygen tolerance	aerobe
[Ref.: #116790]	Oxygen tolerance	obligate aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #116790]	NaCl		growth	4	%
[Ref.: #116790]	NaCl	no	growth	0	%
[Ref.: #116790]	NaCl	no	growth	2	%
[Ref.: #116790]	NaCl	no	growth	6	%
[Ref.: #116790]	NaCl	no	growth	8	%
[Ref.: #116790]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116790]	citrate ChEBI	-	carbon source
[Ref.: #116790]	esculin ChEBI	-	hydrolysis
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #116790]	hippurate ChEBI	+	hydrolysis
[Ref.: #116790]	nitrate ChEBI	-	reduction
[Ref.: #116790]	nitrate ChEBI	-	respiration
[Ref.: #116790]	nitrite ChEBI	-	reduction
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #116790]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #116790]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #116790]		acetoin ChEBI	-
[Ref.: #116790]		glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #116790]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #116790]	amylase	-
[Ref.: #116790]	beta-galactosidase	+	3.2.1.23
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #116790]	caseinase	-	3.4.21.50
[Ref.: #116790]	catalase	+	1.11.1.6
[Ref.: #116790]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116790]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #116790]	gelatinase	+/-
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #116790]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #116790]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116790]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #116790]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116790]	oxidase	-
[Ref.: #116790]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #116790]	protease	+
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116790]	tryptophan deaminase	-
[Ref.: #116790]	tween esterase	-
[Ref.: #116790]	urease	-	3.5.1.5
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #116790]	2552	not determinedn.d.	+	+	+	-	+	-	-	+	-	+	+	+	+	-	-	-	-	-	-	+	+	+	-	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	-	-	-	-	-	-	+	+	+	+	+	+	+	+	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	-	+	+	-

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18609]	162	not determinedn.d.	+	+	-	-	+	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	-	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18609]	248	not determinedn.d.	-	+	+	-	+	+	-	-	-	-	-	-	+	-	+	-	-	+	-
[Ref.: #116790]	10834	-	+	+	+	-	+	-	+	-	-	-	+	-	-	-	-	-	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6405]	Sample type/isolated from	camembert cheese
[Ref.: #6405]	Country	France
[Ref.: #6405]	Country ISO 3 Code	FRA
[Ref.: #6405]	Continent	Europe

[Ref.: #59516]	Sample type/isolated from	Cheese,Camembert
[Ref.: #59516]	Country	France
[Ref.: #59516]	Country ISO 3 Code	FRA
[Ref.: #59516]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Surface of Camembert cheese

[Ref.: #116790]	Sample type/isolated from	Food, Cheese, Camembert
[Ref.: #116790]	Country	France
[Ref.: #116790]	Country ISO 3 Code	FRA
[Ref.: #116790]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Dairy product
#Host	#Fungi	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ609630 (>99% sequence identity) for Glutamicibacter from Microbeatlas

Aquatic Samples	119
Soil Samples	175
Animal Samples	1072
Plant Samples	120
Total Samples	1486

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18609]	Biosafety level	1	Hazard group
[Ref.: #6405]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116790]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6405]	Arthrobacter bergeri partial 16S rRNA gene, strain CIP 108036	AJ609630	1468	ENA	256702 tax ID

Availability in culture collections External links

[Ref.: #6405]

Culture collection no.

DSM 16367, CIP 108036, CCUG 52342, JCM 13567, IAM 15319, NCIMB 14259

[Ref.: #77045]

SI-ID 128535

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arthrobacter endophyticus sp. nov., an endophytic actinobacterium isolated from root of Salsola affinis C. A. Mey.	Wang HF, Li L, Zhang YG, Hozzein WN, Zhou XK, Liu WH, Duan YQ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.000235	2015	*
Phylogeny	Arthrobacter bergerei sp. nov. and Arthrobacter arilaitensis sp. nov., novel coryneform species isolated from the surfaces of cheeses.	Irlinger F, Bimet F, Delettre J, Lefevre M, Grimont PAD	Int J Syst Evol Microbiol	10.1099/ijs.0.63125-0	2005	*

References

#6405

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16367

#18609

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#41910 ; Curators of the CIP;
#59516 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52342
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#77045

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID128535.1 )

#116790 Collection of Institut Pasteur ; Curators of the CIP; CIP 108036
* These data were automatically processed and therefore are not curated

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