Glutamicibacter bergerei (DSM 16367, CIP 108036, CCUG 52342)

Name: Glutamicibacter bergerei (DSM 16367, CIP 108036, CCUG 52342)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7601

Type strain

Strain Designation Ca106

Culture col. no. DSM 16367 CIP 108036 CCUG 52342 Ca106 NCIMB 14259 2 more

NCBI tax ID(s) 256702

Special Collections DSMZ CCUG JCM CIP Wink compendium

History DSMZ <- C. Bizet, CIP <- F. Irlinger, INRA JCM <-- CIP 108036 <-- F. Irlinger Ca106. CIP <- 2003, F. Irlinger, INRA, Thiverval Grignon, France: strain Ca106 <- UMR GMPA, INRA <- Adria Normandie

Links

Glutamicibacter bergerei Ca106 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from camembert cheese.

Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 128535

CIP 108036,DSM 16367,JCM 13567,IAM 15319,CCUG 52342

@ref 20215

Last LPSN update 2026-05-29 08:26:41

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Glutamicibacter

Species Glutamicibacter bergerei

Full scientific name Glutamicibacter bergerei (Irlinger et al. 2005) Busse 2016

Synonyms (3)

Arthrobacter ardleyensis
Glutamicibacter ardleyensis
Arthrobacter bergerei

BacDive ID	Other strains from **Glutamicibacter bergerei** (1)	Type strain
154950	G. bergerei CCUG 55840

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
116790	positive	rod-shaped

Colony morphology

@ref	Colony color	Incubation period	Medium used	Hemolysis ability
18609	Rapeseed yellow (1021)	10-14 days	ISP 2
18609	Rapeseed yellow (1021)	10-14 days	ISP 3
18609	Rapeseed yellow (1021)	10-14 days	ISP 4
18609	Rapeseed yellow (1021)	10-14 days	ISP 5
18609	Rapeseed yellow (1021)	10-14 days	ISP 6
18609	Rapeseed yellow (1021)	10-14 days	ISP 7
116790				0

Multicellular morphology

@ref	Forms multicellular complex	Medium name
18609		ISP 2
18609		ISP 3
18609		ISP 4
18609		ISP 5
18609		ISP 6
18609		ISP 7

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6405	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
18609	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
18609	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
18609	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
18609	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
18609	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
18609	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
41910	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116790	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
6405	positive	growth	28
18609	positive	optimum	28
41910	positive	growth	30
59516	positive	growth	20-30
67770	positive	growth	28
116790	positive	growth	10-30
116790	negative	growth	37
116790	negative	growth	41
116790	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
59516	aerobe
116790	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.129

Halophily

@ref	Salt	Growth	Tested relation	Concentration
116790	NaCl	positive	growth	4 %
116790	NaCl		growth	0 %
116790	NaCl		growth	2 %
116790	NaCl		growth	6 %
116790	NaCl		growth	8 %
116790	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
116790	16947 ChEBI	citrate	-	carbon source
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
116790	4853 ChEBI	esculin	-	hydrolysis
68379	5291 ChEBI	gelatin	+	hydrolysis	from API Coryne
116790	606565 ChEBI	hippurate	+	hydrolysis
116790	17632 ChEBI	nitrate	-	reduction
116790	17632 ChEBI	nitrate	-	respiration
116790	16301 ChEBI	nitrite	-	reduction
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68379	16199 ChEBI	urea	+	hydrolysis	from API Coryne

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
116790	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116790	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
116790	15688 ChEBI	acetoin	-
116790	17234 ChEBI	glucose		+

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
116790	alcohol dehydrogenase	-	1.1.1.1
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	+	3.2.1.24	from API zym
116790	amylase	-
116790	beta-galactosidase	+	3.2.1.23
68379	beta-galactosidase	+	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
116790	caseinase	-	3.4.21.50
116790	catalase	+	1.11.1.6
116790	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
116790	gamma-glutamyltransferase	+	2.3.2.2
116790	gelatinase	+/-
68379	gelatinase	+		from API Coryne
116790	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
116790	lipase	-
68382	lipase (C 14)	-		from API zym
116790	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
116790	ornithine decarboxylase	-	4.1.1.17
116790	oxidase	-
116790	phenylalanine ammonia-lyase	-	4.3.1.24
116790	protease	+
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	+	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
116790	tryptophan deaminase	-
116790	tween esterase	-
116790	urease	-	3.5.1.5
68379	urease	+	3.5.1.5	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
18609	not determinedn.d.	+	+	-	-	+	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	-	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
18609	not determinedn.d.	-	+	+	-	+	+	-	-	-	-	-	-	+	-	+	-	-	+	-
116790	-	+	+	+	-	+	-	+	-	-	-	+	-	-	-	-	-	-	+	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116790	not determinedn.d.	+	+	+	-	+	-	-	+	-	+	+	+	+	-	-	-	-	-	-	+	+	+	-	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	-	-	-	-	-	-	+	+	+	+	+	+	+	+	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	-	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Dairy product
#Host	#Fungi	-

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
6405	camembert cheese	France	FRA	Europe
59516	Cheese,Camembert	France	FRA	Europe
67770	Surface of Camembert cheese
116790	Food, Cheese, Camembert	France	FRA	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ609630 (>99% sequence identity) for Glutamicibacter from Microbeatlas

Aquatic Samples	119
Soil Samples	175
Animal Samples	1072
Plant Samples	120
Total Samples	1486

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6405	1	Risk group (German classification) According to TRBA 466
18609	1	Hazard group According to TRBA 466
116790	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4265274v1 assembly for Glutamicibacter bergerei CCUG 52342	scaffold	GCA_042652745	256702	54.5
124043	ASM3953460v1 assembly for Glutamicibacter bergerei JCM 13567	scaffold	GCA_039534605	256702	53.3

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6405	Arthrobacter bergeri partial 16S rRNA gene, strain CIP 108036	AJ609630	1468		256702
124043	Glutamicibacter bergerei strain CIP 108036 (T) 16S ribosomal RNA gene, partial sequence.	MK424283	1448		256702

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4265274v1 assembly for Glutamicibacter bergerei CCUG 52342
NCBI: GCA_042652745

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	72.79	no
125439	gram_stain	BacteriaNetⓘ	negative	42.78	no
125439	motility	BacteriaNetⓘ	no	61.62	no
125439	spore_formation	BacteriaNetⓘ	no	99.13	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Virulent Phages Isolated from a Smear-Ripened Cheese Are Also Detected in Reservoirs of the Cheese Factory.	Paillet T, Lossouarn J, Figueroa C, Midoux C, Rue O, Petit MA, Dugat-Bony E.	Viruses	10.3390/v14081620	2022
	Effects of ciprofloxacin on bacterial abundance and enrichments in samples taken from the sea surface microlayer and underlying waters in the southern North Sea.	Adenaya A, Zumbika F, Rios-Quintero R, Lara-Martin PA, Wurl O, Konneke M, Ribas-Ribas M, Hamprecht A, Brinkhoff T.	Front Microbiol	10.3389/fmicb.2025.1624041	2025
Phylogeny	Arthrobacter endophyticus sp. nov., an endophytic actinobacterium isolated from root of Salsola affinis C. A. Mey.	Wang HF, Li L, Zhang YG, Hozzein WN, Zhou XK, Liu WH, Duan YQ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.000235	2015
Phylogeny	Arthrobacter bergerei sp. nov. and Arthrobacter arilaitensis sp. nov., novel coryneform species isolated from the surfaces of cheeses.	Irlinger F, Bimet F, Delettre J, Lefevre M, Grimont PAD	Int J Syst Evol Microbiol	10.1099/ijs.0.63125-0	2005

References

#6405	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16367
#18609	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#41910	; Curators of the CIP;
#59516	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52342
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116790	Collection of Institut Pasteur ; Curators of the CIP; CIP 108036
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Glutamicibacter bergerei (DSM 16367, CIP 108036, CCUG 52342)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API coryne

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042652745

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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