Name: Bacillus pumilus 236
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 755

Type strain:

Species: Bacillus pumilus

Strain Designation: 236, 726

Culture col. no.: DSM 2893, ATCC 6631, IFO 12110, NBRC 12110, CIP 52.68, ATCC 8471, NRRL: NRS-236

Strain history: CIP <- 1952, N.R. Smith, New Jersey Agri. Stat., USA: strain 236 <- AMNH: strain 726 <- W. Ford, Bacillus mesentericus

NCBI tax ID(s): 1408 (species)

SI-ID 45469

ATCC 6631, ATCC 8471, NRRL NRS-236, DSM 2893, IFO 12110, NRRL B-1489, CIP 52.68, NBRC 12110, ICMP 6631, NCAIM B.01081

Other strains from Bacillus pumilus

B. pumilus 272, DSM 27, ATCC 7061, CCM 2144, ... (type strain)
B. pumilus 734a, 735, DSM 354, ATCC 71, CCM ...
B. pumilus 734, 736, DSM 355, ATCC 72, CCM ...
B. pumilus CIP3.83, Mill Hill, DSM 361, ATCC ...
B. pumilus E 601, E601, CCUG 24142, DSM 492, ...
B. pumilus 29, DSM 766
B. pumilus DSM 1794, NCIB 10822, CN 607
B. pumilus G1R, DSM 5549, HER 1182
B. pumilus DSM 8786, DSM 46309, IMET 11026, ...
B. pumilus ES 20, DSM 13835
B. pumilus ES1-184-2, DSM 30537
B. pumilus ES1-215-1, DSM 30550
B. pumilus ES2-8a2, DSM 30596
B. pumilus ES2-12c1, DSM 30606
B. pumilus FR2-W6Ac, DSM 30704
B. pumilus FR2-W7Aa, DSM 30708
B. pumilus FR2-W7Ab, DSM 30709
B. pumilus FR2-W8Aa, DSM 30714
B. pumilus W17/3, DSM 30786
B. pumilus ES2-W4c1, DSM 30628
B. pumilus FR2-S1Aa, DSM 30670
B. pumilus FR2-S4Aa, DSM 30672
B. pumilus FR2-S4Ab, DSM 30673
B. pumilus FR2-S7Ab, DSM 30678
B. pumilus FR2-S7Ac, DSM 30679
B. pumilus FR2-S11Aa-b, DSM 30681
B. pumilus FR2-W6Ab, DSM 30703
B. pumilus FR1-11con, DSM 30720
B. pumilus W20/5, DSM 30789
B. pumilus MW15/1, DSM 30805
B. pumilus TS1/1, DSM 30806
B. pumilus KO_PS 3, DSM 30833
B. pumilus W2, DSM 100617
B. pumilus T4_3, DSM 100541
B. pumilus DSM 30004, ATCC 15716, DSM 15573, ...
B. pumilus b17_1, DSM 31005
B. pumilus T2_3, DSM 30977
B. pumilus T2_44, DSM 30997
B. pumilus Stev13, DSM 103049
B. pumilus Stev38, DSM 103053
B. pumilus D35_1, DSM 103757
B. pumilus C8_12, DSM 103869
B. pumilus 7.87, CIP 102756
B. pumilus CIP 51.18, CN 2731
B. pumilus 520.86, CIP 102496
B. pumilus CIP 52.42
B. pumilus H 634, CIP 101996
B. pumilus CIP 102081
B. pumilus T3_14, DSM 103904
B. pumilus CCUG 397
B. pumilus CCUG 4626
B. pumilus CCUG 21924
B. pumilus CCUG 26531
B. pumilus CCUG 27243
B. pumilus CCUG 27263
B. pumilus CCUG 28267 B
B. pumilus CCUG 30128
B. pumilus CCUG 30686
B. pumilus CCUG 32666
B. pumilus CCUG 34244
B. pumilus CCUG 35011
B. pumilus CCUG 41443
B. pumilus CCUG 43804
B. pumilus CCUG 44877
B. pumilus CCUG 44940
B. pumilus CCUG 47302
B. pumilus CCUG 50373 A
B. pumilus CCUG 56623
B. pumilus CCUG 66887
B. pumilus CIMB23, CIMB 05-1841, CRBIP17.23
B. pumilus CIMB 05-0968, CRBIP17.25

Section

Bacillus pumilus 236 is a spore-forming, mesophilic, Gram-positive human pathogen of the family Bacillaceae.

Gram-positive
motile
rod-shaped
spore-forming
human pathogen
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Bacillus*
	Species	**Bacillus pumilus**
	Full Scientific Name (LPSN)	Bacillus pumilus Meyer and Gottheil 1901 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #122058]	Gram stain	positive

[Ref.: #122058]	Cell shape	rod-shaped

[Ref.: #122058]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1159]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #1159]

Culture medium growth

[Ref.: #1159]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1159]

Culture medium composition

expand / minimize

[Ref.: #41302]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #41302]

Culture medium growth

[Ref.: #41302]

Culture medium composition

expand / minimize

[Ref.: #122058]

Culture medium

CIP Medium 72

[Ref.: #122058]

Culture medium growth

[Ref.: #122058]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #122058]

Culture medium

CIP Medium 3

[Ref.: #122058]

Culture medium growth

[Ref.: #122058]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #1159]			growth	26 °C
[Ref.: #41302]			growth	30 °C

[Ref.: #1159]	Temperature range	mesophilic
[Ref.: #41302]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #122058]

Ability of spore formation

yes

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122058]	2985	not determinedn.d.	+	+	+	+	+	-	+	+	+	-	+	+	-	-	+	+	+	+	+	+	+	+	+	-	-	-	-	-	-	-	+	+	-	+	+	+	-	-	-	-	-	+	-	+	+	-	-	-	-	+	+	+	-	+	-	-	-	-	-	+	+	-	-	-	+	-	-	-	-	-	-	-	-	+	-	+	-	-	-	+	+	-	+	-	-	-	+	-	-	+	+	+	+	+	+	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AB680241 (>99% sequence identity) for Bacillus from Microbeatlas

Aquatic Samples	3497
Soil Samples	7187
Animal Samples	6743
Plant Samples	2902
Total Samples	20329

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1159]	Pathogenicity (human)	yes, in single cases
[Ref.: #1159]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122058]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Bacillus pumilus gene for 16S rRNA, partial sequence, strain: NBRC 12110	AB680241	1474	ENA	1408 tax ID	*

Availability in culture collections External links

[Ref.: #1159]

Culture collection no.

DSM 2893, ATCC 6631, IFO 12110, NBRC 12110, CIP 52.68, ATCC 8471, NRRL: NRS-236

[Ref.: #70429]

SI-ID 45469

References

#1159

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2893

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41302 ; Curators of the CIP;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#70429

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45469.1 )

#122058 Collection of Institut Pasteur ; Curators of the CIP; CIP 52.68
* These data were automatically processed and therefore are not curated

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