Bacillus pumilus (DSM 27, ATCC 7061, CCM 2144)

Name: Bacillus pumilus (DSM 27, ATCC 7061, CCM 2144)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 756

Type strain

Strain Designation 272

Culture col. no. DSM 27 ATCC 7061 CCM 2144 IFO 12092 JCM 2508 20 more

NCBI tax ID(s) 536229 1408

Special Collections DSMZ CCUG JCM KCTC CIP Literature strains

History <- ATCC <- N.R. Smith, 272 <- F. Löhnis <- Král <- O. Gottheil CCM 2144 <-- R. E. Gordon. CIP <- 1952, R.E. Gordon, New Jersey Agri. Exper. Stat., New Brunswick, USA: strain 272 <- 1914, F. Löhnis <- Kràl Collection, Vienna, Austria

Links

Bacillus pumilus 272 is an obligate aerobe, mesophilic, Gram-positive prokaryote of the family Bacillaceae.

Gram-positive motile rod-shaped obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 92134

LMG 7132,ATCC 7061,CCM 2144,CECT 29,DSM 27,IAM 12469,IFO 12092,JCM 2508,LMG 18928,NCFB 1766,NCIB 9369,NCTC 10337,CCUG 26015,CCUG 26016,NCDO 1766,CCRC 11706,NCIMB 9369,VKM B-508,LMD 48.24,CCRC 11065,NRRL NRS-272,NCIM 9369,KCTC 3348,NBRC 12092,NCCB 48024,BCRC 11706,HAMBI 1826,BCRC 11065,CCT 0513,IAM 14177,KCTC 3855,KACC 10917,CGMCC 1.3533,VTT E-95572,IAM 567,CIP 52.67

@ref 20215

Last LPSN update 2026-02-09 11:17:56

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Bacillus

Species Bacillus pumilus

Full scientific name Bacillus pumilus Meyer and Gottheil 1901 (Approved Lists 1980)

BacDive ID	Other strains from **Bacillus pumilus** (72)	Type strain
749	B. pumilus 734a, 735, DSM 354, ATCC 71, CCM 1726
750	B. pumilus 734, 736, DSM 355, ATCC 72, CCM 1697, IFO ...
751	B. pumilus CIP3.83, Mill Hill, DSM 361, ATCC 14884, ...
752	B. pumilus E 601, E601, CCUG 24142, DSM 492, ATCC 27142, ...
753	B. pumilus 29, DSM 766
754	B. pumilus DSM 1794, NCIB 10822, CN 607
755	B. pumilus 236, 726, DSM 2893, ATCC 6631, IFO 12110, ...
757	B. pumilus G1R, DSM 5549, HER 1182
758	B. pumilus DSM 8786, DSM 46309, IMET 11026, NCIB 7198
759	B. pumilus ES 20, DSM 13835
760	B. pumilus ES1-184-2, DSM 30537
761	B. pumilus ES1-215-1, DSM 30550
762	B. pumilus ES2-8a2, DSM 30596
763	B. pumilus ES2-12c1, DSM 30606
764	B. pumilus FR2-W6Ac, DSM 30704
765	B. pumilus FR2-W7Aa, DSM 30708
766	B. pumilus FR2-W7Ab, DSM 30709
767	B. pumilus FR2-W8Aa, DSM 30714
768	B. pumilus W17/3, DSM 30786
769	B. pumilus ES2-W4c1, DSM 30628
770	B. pumilus FR2-S1Aa, DSM 30670
771	B. pumilus FR2-S4Aa, DSM 30672
772	B. pumilus FR2-S4Ab, DSM 30673
773	B. pumilus FR2-S7Ab, DSM 30678
774	B. pumilus FR2-S7Ac, DSM 30679
775	B. pumilus FR2-S11Aa-b, DSM 30681
776	B. pumilus FR2-W6Ab, DSM 30703
777	B. pumilus FR1-11con, DSM 30720
778	B. pumilus W20/5, DSM 30789
779	B. pumilus MW15/1, DSM 30805
780	B. pumilus TS1/1, DSM 30806
781	B. pumilus KO_PS 3, DSM 30833
130862	B. pumilus W2, DSM 100617
130861	B. pumilus T4_3, DSM 100541
22913	B. pumilus DSM 30004, ATCC 15716, DSM 15573, IFO 12605, ...
130168	B. pumilus b17_1, DSM 31005
130169	B. pumilus T2_3, DSM 30977
130170	B. pumilus T2_44, DSM 30997
131630	B. pumilus Stev13, DSM 103049
131631	B. pumilus Stev38, DSM 103053
131632	B. pumilus D35_1, DSM 103757
131633	B. pumilus C8_12, DSM 103869
134937	B. pumilus 7.87, CIP 102756
137078	B. pumilus CIP 51.18, CN 2731
137576	B. pumilus 520.86, CIP 102496
138631	B. pumilus CIP 52.42
138682	B. pumilus H 634, CIP 101996
138686	B. pumilus CIP 102081
139688	B. pumilus T3_14, DSM 103904
141248	B. pumilus CCUG 397
141663	B. pumilus CCUG 4626
143929	B. pumilus CCUG 21924
144775	B. pumilus CCUG 26531
144948	B. pumilus CCUG 27243
144950	B. pumilus CCUG 27263
145355	B. pumilus CCUG 28267 B
146007	B. pumilus CCUG 30128
146237	B. pumilus CCUG 30686
147025	B. pumilus CCUG 32666
147795	B. pumilus CCUG 34244
148189	B. pumilus CCUG 35011
150505	B. pumilus CCUG 41443
151344	B. pumilus CCUG 43804
151785	B. pumilus CCUG 44877
151802	B. pumilus CCUG 44940
152656	B. pumilus CCUG 47302
153625	B. pumilus CCUG 50373 A
155159	B. pumilus CCUG 56623
156911	B. pumilus CCUG 66887
173512	B. pumilus CIMB23, CIMB 05-1841, CRBIP17.23
173513	B. pumilus CIMB 05-0968, CRBIP17.25
176402	B. pumilus 45.39, DSM 117807

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
122057	positive	rod-shaped

Colony morphology

Multimedia

@ref:	2028
multimedia content:	DSM_27.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_27.jpg
caption:	DSM 27 Bacillus pumilus
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
2028	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
40218	MEDIUM 29- Brain heart agar		Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
122057	CIP Medium 29	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
2028	positive	growth	30	mesophilic
40218	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic
122057	positive	growth	22-45
122057	negative	growth	5
122057	negative	growth	10

Culture pH

@ref	Ability	Type	PH
122057	positive	growth	6

Physiology and metabolism

Oxygen tolerance

122057

Oxygen toleranceobligate aerobe

Spore formation

@ref	Spore formation	Confidence
125438		95.325

Halophily

@ref	Salt	Growth	Tested relation	Concentration
122057	NaCl	positive	growth	0-10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	+	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
22900	23652 ChEBI	dextrin	-	growth
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
122057	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
22900	28260 ChEBI	galactose	+	growth
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
22900	24265 ChEBI	gluconate	+	growth
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
22900	28087 ChEBI	glycogen	-	growth
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
22900	30849 ChEBI	L-arabinose	+	growth
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
22900	506227 ChEBI	N-acetyl-D-glucosamine	+	growth
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
22900	17632 ChEBI	nitrate	-	reduction
122057	17632 ChEBI	nitrate	-	reduction
122057	17632 ChEBI	nitrate	-	respiration
122057	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
22900	26546 ChEBI	rhamnose	-	growth
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
22900	28017 ChEBI	starch	-	growth
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122057	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
122057	15688 ChEBI	acetoin	+
122057	17234 ChEBI	glucose		+

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122057	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
22900	alpha-glucosidase	-	3.2.1.20
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
122057	amylase	-
22900	arginine dihydrolase	-	3.5.3.6
68382	beta-galactosidase	-	3.2.1.23	from API zym
122057	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122057	caseinase	+	3.4.21.50
122057	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
122057	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
122057	gelatinase	+
122057	lecithinase	-
68382	leucine arylamidase	-	3.4.11.1	from API zym
122057	lipase	+
68382	lipase (C 14)	-		from API zym
122057	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
122057	ornithine decarboxylase	-	4.1.1.17
122057	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
122057	tween esterase	+
122057	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122057	-	+	+	+	-	-	-	-	-	+	+	-	-	-	-	-	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
122057	not determinedn.d.	+	-	-	+	+	-	-	-	-	-	+	+	+	-	-	-	-	+	-	-	-	+	-	+	+	+	+	-	-	-	+	+	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
122057	not determinedn.d.	+	+	+	+	+	-	-	+	-	-	-	-	-	-	-	+	-	+	+	+	+	+	-	-	-	-	-	-	-	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	+	-	-	-	-	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	+	-	-	-	-	-	+	+	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Taxonmaps

69479

Global distribution of 16S sequence AM237370 (>99% sequence identity) for Bacillus from Microbeatlas

Aquatic Samples	3497
Soil Samples	7187
Animal Samples	6743
Plant Samples	2902
Total Samples	20329

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
2028	yes, in single cases	1	Risk group (German classification) According to TRBA 466
122057		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	49386_E02 assembly for Bacillus pumilus NCTC10337	complete	GCA_900186955	1408.193	2880148112	1408	96.91
124043	DSM-27 assembly for Bacillus pumilus DSM 27	complete	GCA_038734075			1408	91.39
67770	ASM17281v1 assembly for Bacillus pumilus ATCC 7061	contig	GCA_000172815	536229.4	642791616	536229	72.79
124043	ASM3622287v1 assembly for Bacillus pumilus NRS-272	scaffold	GCA_036222875	1408.709		1408	71.66
124043	ASM3131657v1 assembly for Bacillus pumilus ATCC 7061	contig	GCA_031316575	1408.663	8119720146	1408	60.39

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Bacillus pumilus 16S ribosomal RNA gene, partial sequence	DQ105967	1449	1408
20218	Bacillus pumilus strain 001T 16S ribosomal RNA gene, partial sequence	FJ477095	650	1408
20218	Bacillus pumilus strain ATCC 7061 16S ribosomal RNA gene, partial sequence	AY876289	1434	1408
20218	Bacillus pumilus strain ATCC 7061 16S ribosomal RNA gene, partial sequence	GQ911554	803	1408
20218	Bacillus pumilus strain ATCC 7061 16S ribosomal RNA gene, partial sequence	JQ424887	1456	1408
20218	Bacillus pumilus strain CIP 52.67 16S ribosomal RNA gene, partial sequence	AY876045	1065	1408
20218	Bacillus pumilus partial 16S rRNA gene, isolate OS-70	AM237370	1459	1408
20218	Bacillus pumilus strain DSMZ27 16S ribosomal RNA gene, partial sequence	AY456263	1481	1408
20218	Bacillus pumilus gene for 16S rRNA, partial sequence	AB006934	274	1408
20218	Bacillus pumilus gene for 16S rRNA, partial sequence	AB271753	1474	1408
20218	B.pumilus 16S ribosomal RNA	X60637	1427	1408
124043	Bacillus pumilus strain CIP 52.67 16S ribosomal RNA gene, partial sequence.	OQ456136	432	1408
124043	Bacillus pumilus strain ATCC 7061 16S ribosomal RNA gene, partial sequence.	OQ876682	1431	1408
124043	Bacillus pumilus strain ATCC 7061 16S ribosomal RNA gene, partial sequence.	OQ921696	1380	1408
124043	Bacillus pumilus strain CIP 52.67 16S ribosomal RNA gene, partial sequence.	OQ928766	707	1408
124043	Bacillus pumilus strain ATCC 7061 16S ribosomal RNA gene, partial sequence.	PQ836101	1124	1408
124043	Bacillus pumilus strain ATCC 7061 16S ribosomal RNA gene, partial sequence.	PP657478	1435	1408
124043	Bacillus pumilus strain NBRC-12092 16S ribosomal RNA gene, partial sequence.	KX261622	1394	1408
124043	Bacillus pumilus strain NBRC 12092 16S ribosomal RNA gene, partial sequence.	MK183792	818	1408
124043	Bacillus pumilus strain NRRL NRS-272 16S ribosomal RNA gene, partial sequence.	EU138517	1167	1408
124043	Bacillus pumilus strain CIP 52.67 16S ribosomal RNA gene, partial sequence.	PQ774798	1140	1408

GC content

@ref	GC-content (mol%)	Method
2028	41.9	thermal denaturation, midpoint method (Tm)
2028	40.7	Buoyant density centrifugation (BD)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bacillus pumilus NCTC10337
NCBI: GCA_900186955

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	53.10	no
125439	motility	BacteriaNetⓘ	yes	63.80	no
125439	gram_stain	BacteriaNetⓘ	variable	75.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	85.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus pumilus NCTC10337
NCBI: GCA_900186955.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	77.48	no
125438	anaerobic	anaerobicⓘ	no	92.21	yes
125438	aerobic	aerobicⓘ	yes	70.45	no
125438	spore-forming	spore-formingⓘ	yes	95.33	no
125438	thermophilic	thermophileⓘ	no	94.31	yes
125438	flagellated	motile2+ⓘ	yes	86.53	no

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Genetics	Analysis of the genome of Bacillus safensis strain WOB3 KX774195, a Linamarin-utilizing bacterium (LUB) isolated from Cassava wastewater (CWW), Lagos State, Nigeria.	Ogunyemi AK, Buraimoh OM, Dauda WP, Akapo OO, Ogunyemi BC, Samuel TA, Ilori MO, Amund OO.	Data Brief	10.1016/j.dib.2024.110807	2024
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Transcriptome	Draft genome sequence of Bacillus pumilus BA06, a producer of alkaline serine protease with leather-dehairing function.	Zhao CW, Wang HY, Zhang YZ, Feng H.	J Bacteriol	10.1128/jb.01694-12	2012
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Enzymology	Evaluation of Bioaerosol Bacterial Components of a Wastewater Treatment Plant Through an Integrate Approach and In Vivo Assessment.	Bruni E, Simonetti G, Bovone B, Casagrande C, Castellani F, Riccardi C, Pomata D, Di Filippo P, Federici E, Buiarelli F, Uccelletti D.	Int J Environ Res Public Health	10.3390/ijerph17010273	2019
	The Assembly of Bacteria Living in Natural Environments Shapes Neuronal Integrity and Behavioral Outputs in Caenorhabditis elegans.	Urquiza-Zurich S, Garcia-Angulo VA, Burdisso P, Palominos MF, Fernandez-Hubeid L, Harcha PA, Castillo JP, Calixto A.	mBio	10.1128/mbio.03402-22	2023
Phylogeny	Development of a combined selection and enrichment PCR procedure for Clostridium botulinum Types B, E, and F and its use to determine prevalence in fecal samples from slaughtered pigs.	Dahlenborg M, Borch E, Radstrom P.	Appl Environ Microbiol	10.1128/aem.67.10.4781-4788.2001	2001
	Chromium-Tanned Leather and Microbial Consortia: Identification of Taxa With Biodegradation Potential and Chromium Tolerance.	Bonilla-Espadas M, Lifante-Martinez I, Camacho M, Orgiles-Calpena E, Aran-Ais F, Bertazzo M, Bonete MJ.	Environ Microbiol Rep	10.1111/1758-2229.70134	2025
Enzymology	Isolation of Bacillus amyloliquefaciens D39 and Identification of Its Antimicrobial Proteins Active Against Chestnut Blight.	Deng T, Wang L, Zhu T.	Microorganisms	10.3390/microorganisms13061302	2025
	Prevalence and Correlates of Phenazine Resistance in Culturable Bacteria from a Dryland Wheat Field.	Perry EK, Newman DK.	Appl Environ Microbiol	10.1128/aem.02320-21	2022
Metabolism	Untangling the metabolome of resistant (VBN4) and susceptible (CO5) blackgram cultivar bacterized with Bacillus pumilus imparts resistance response against yellow mosaic disease.	Sariga R, Ajesh BR, Renukadevi P, Nakkeeran S, Yesuraja I, Ramalingam J, Yuvaraja A.	Microb Pathog	10.1016/j.micpath.2025.108051	2025
	Preparation of ginsenoside Rd using a novel alpha-L-arabinofuranosidase BpAbf51A from Bacillus pumilus.	Shen Y, Yang Y, Song Y, Shan Y, Liu J, Hu Y.	Enzyme Microb Technol	10.1016/j.enzmictec.2025.110729	2025
Genetics	Draft genome sequence of the epiphytic Bacillus pumilus strain App11D isolated from the surface of Alhagi pseudoalhagi (Bieb.) Fisch. seeds.	Chebotar VK, Lunegov IA, Gancheva MS, Kudryavtcev DV, Bortsova OA, Chizhevskaya EP, Pishchik VN.	Microbiol Resour Announc	10.1128/mra.00529-25	2025
	Engineering Laccase from Bacillus pumilus for Improved Thermostability and Its Combination with Lytic Polysaccharide Monooxygenase for Lignin Depolymerization.	Zhao L, Huang A, Yang M, Zhang M, Yu F, Lu F, Chen X, Wang Y, Liu F.	J Agric Food Chem	10.1021/acs.jafc.5c04782	2025
	Susceptibility of microbes to far-UVC light (222 nm) on spacecraft and cleanroom surfaces.	Petersen C, Urbano J, Hinzer A, Shuryak I, Wang E, Hashmi R, Guan L, Buonanno M, Welch D.	Microbiol Spectr	10.1128/spectrum.02276-25	2025
	Screening, Identification, and Optimization of Protease Producing Bacillus pumilus Strain DT-15 From Tannery Waste Disposal Site in Addis Ababa, Ethiopia.	Feyissa BH.	Int J Microbiol	10.1155/ijm/7176092	2025
	Enhanced synthesis of alanyl-glutamine dipeptide via molecular modification and process optimization of alpha-amino acid ester acyltransferase EAET.	Wei J, Liu X, Gao Y, Yang JW, Zhang HB, Hu XQ.	Enzyme Microb Technol	10.1016/j.enzmictec.2025.110754	2026
	[Screening and fermentation condition optimization of Streptomyces scabies antagonists].	Dou M, Wang Z, Zhao P, Wang X, Wang A, Zhong N.	Sheng Wu Gong Cheng Xue Bao	10.13345/j.cjb.250051	2025
	Sterilization of Stainless-Steel Surfaces Using Ultraviolet Radiation Produced by Light-Emitting Diodes.	Wood J, Monge M, Seto EP, Ratliff K, Ford B, Aslett D, Abdel-Hady A, Mendez Sandoval L.	Astrobiology	10.1177/15311074251365196	2025
	Free-standing bacterial films reinforced with 2D layered double hydroxide nanosheets: A biohybrid platform toward engineered living materials.	Gurianov Y, Shlar I, Poverenov E.	Acta Biomater	10.1016/j.actbio.2025.07.034	2025
	Non-reactive biochar and Bacillus pumilus RSB17-based healing powder: A sustainable solution for enhanced bacterial viability in self-healing mortar.	Anoop PP, Palanisamy T.	Sci Total Environ	10.1016/j.scitotenv.2025.178635	2025
	Selection of microbial isolates for oxyfluorfen degradation in soil.	Reginaldo LTRT, de Freitas Souza M, da Silva CC, Silva JLDS, de Aquino GSM, das Chagas PSF, Blat NR, Ambrosio MMQ, Holanda ISA, Silva DV.	J Hazard Mater	10.1016/j.jhazmat.2025.139969	2025
Pathogenicity	Bacillus pumilus SMU5927 protect mice from damage caused by Salmonella Enteritidis colonization.	Ran L, Lei J, Liu H, Wang D, Liu J, Yang F, Chen D.	Life Sci	10.1016/j.lfs.2024.123291	2025
	Bacillus velezensis JM11 and Bacillus pumilus CPCF54 ameliorate Cadmium-Induced Oxidative Stress in Gladiolus grandiflorus Cut Flower.	Mahmood T, Moosa A, Zulfiqar F, Alharthy OM, Hadadi F, Alhelaify SS, Fayad E, Alqurashi M, Alsharari SF, Alatawy M, Ghabban H, Alzayed RM, Alhajouj SA.	Curr Microbiol	10.1007/s00284-025-04151-y	2025
	Co-integration of laccase and xylanase from Bacillus pumilus into mini-cellulosome facilitates softwood sulfite pulp biobleaching and reduces hydrogen peroxide consumption.	Liu J, Deng J, Tan X, Li Y, Li H, Cheng W, Jiang Z.	Int J Biol Macromol	10.1016/j.ijbiomac.2024.139048	2025
	Morphological and Molecular Identifications of the Microbial Population Inhabiting the Feathers of the Domestic Pigeon at Different Ages, With Special Reference to the Antimicrobial Impact of Preen Secretions Against the Identified Microbes.	Moustafa SMN, Massoud D, Ahmed YM, Alaida MF, Tawfik RG, Abumandour MMA.	J Exp Zool A Ecol Integr Physiol	10.1002/jez.70002	2025
	Effects of selenium-enriched Bacillus pumilus on the growth performance, blood biochemical parameters, innate immune response, and oxidative activity Nile tilapia (Oreochromis niloticus) fed fishmeal-free diets	Mohammady EY, Khafagy SS, Shawer EE, Soaudy MR, Hassaan MS.	Anim Feed Sci Technol	10.1016/j.anifeedsci.2024.116202	2025
Pathogenicity	Anti-inflammatory properties of Bacillus pumilus TS1 in lipopolysaccharide-induced inflammatory damage in broilers.	Liu Y, Liu S, Wan S, Li Z, Li H, Tang S.	Anim Biotechnol	10.1080/10495398.2024.2418516	2024
	Effects of live Bacillus pumilus SG154 or a Lacticaseibacillus paracasei 327 postbiotic on apparent total tract nutrient digestibility and the immune function and fecal characteristics, metabolites, and microbiota of healthy adult dogs.	Wren JF, Wilson SM, Kang Y, Oba PM, Menton JF, Vinay E, Millette M, Kelly MR, Swanson KS.	J Anim Sci	10.1093/jas/skaf231	2025
	Harnessing emergent properties of microbial consortia for Agriculture: Assembly of the Xilonen SynCom.	Gastelum G, Gomez-Gil B, Olmedo-Alvarez G, Rocha J.	Biofilm	10.1016/j.bioflm.2025.100284	2025
	Characterization of Gut Bacteria in Natural Populations of Sand Flies (Diptera: Psychodidae) from Endemic and Non-Endemic Areas of Leishmaniasis in Morocco.	Daoudi M, Outammassine A, Redouane EM, Loqman S, Hafidi M, Boumezzough A, Olivier M, Boussaa S, Ndao M.	Microorganisms	10.3390/microorganisms13102279	2025
	Effects of Biosurfactant-Producing Bacteria Bacillus pumilus MMLN01 on Major Virulence Factors of Streptococcus mutans.	Nivetha S, Murugan M.	Indian J Microbiol	10.1007/s12088-024-01393-5	2025
	Impact of probiotic-supplemented water on the performance and physiological responses of broilers under normal and heat stress conditions.	Istiteh R, Abuajamieh M, Al-Qaisi M, Abedal-Majed MA, Abdelqader A.	Vet World	10.14202/vetworld.2025.1059-1069	2025
	[Directed evolution improves the catalytic activity of laccase in papermaking].	Ni H, Yang F, Wang L, Li B, Li H, Liu J, Jiang Z, Cheng W.	Sheng Wu Gong Cheng Xue Bao	10.13345/j.cjb.240387	2025
Stress	The effect of heat and fermentation treatments of soybean meal on performance, immune system, microbial population, intestinal morphology, and PepT1 gene expression in broiler chickens.	Miraalami N, Mousavi SN, Abedini MR, Jafarabadi GA.	J Anim Sci	10.1093/jas/skaf040	2025
	Comparative analysis of Bacillus pumilus TUAT1 endospores and vegetative cells: Implications for plant growth promotion and soil microbiome modulation.	Agake SI, Damo JLC, Rai H, Stacey G, Yasuda M, Ohkama-Ohtsu N.	Plant Biotechnol (Tokyo)	10.5511/plantbiotechnology.25.0328a	2025
Phylogeny	Synthesis of nanocellulose from Acalypha hispida leaves through enzymatic hydrolysis.	Poornima MP, Mathews AA, Dileep P, Jacob S.	Int J Biol Macromol	10.1016/j.ijbiomac.2024.138255	2025
	Synthesis and characterization of some thiazolidine 4-one derivatives derived from Schiff bases, and evaluation of their antibacterial and antifungal activity.	Diana AbdAlkreem Al-Rifaie, Mohammed ZHM, Rabeah T Mahmood, Malath Khalaf Rasheed, Ahmad Yaseen Taha, Othman Rashid Al Samarrai.	Cell Mol Biol (Noisy-le-grand)	10.14715/cmb/2025.71.3.9	2025
	Exploring Antimicrobial Potency, ADMET, and Optimal Drug Target of a Non-ribosomal Peptide Sevadicin from Bacillus pumilus, through In Vitro Assay and Molecular Dynamics Simulation.	Iqbal S, Begum F, Alfaifi MY, Elbehairi SEI, Siddique A, Shaw P.	Probiotics Antimicrob Proteins	10.1007/s12602-024-10355-8	2025
	The Public Health Risks of beta-Hemolytic Bacillus pumilus Bacteria Resistant to Gastrointestinal Conditions from Medicinal Plant.	Ugras S, Bahat D.	J Med Food	10.1089/jmf.2024.0138	2024
	Influence of bloom stage on the effectiveness of algicidal bacteria in controlling harmful cyanobacteria: A microcosm study.	Moron-Lopez J, Font-Najera A, Kokocinski M, Jarosiewicz P, Jurczak T, Mankiewicz-Boczek J.	Environ Pollut	10.1016/j.envpol.2025.126261	2025
	Plastic Debris in the Aquatic Environment: An Emerging Substratum for Antimicrobial Resistant (AMR) Biofilms.	Suresh S, Ambily SKA, Chandran P.	Arch Environ Contam Toxicol	10.1007/s00244-024-01086-6	2024
	Effect of solid-state fermentation with Bacillus pumilus on the nutritional value, anti-nutritional factors and antioxidant activity of faba bean (Vicia faba L.) meal	Xu R, Tian T, Hu B, Zhang Z, Liu J, Yu D, Xu H.	Lebensm Wiss Technol		2024
	Isolation, identification and subsequent application of Gram-positive bacterial strains for the bioremediation of benzophenone.	Maqsood A, Mahmood S, Khalid A, Aziz I, Nawaz R, Hanafiah MM, Kjellerup BV.	RSC Adv	10.1039/d5ra05131b	2025
	Microbial contamination of air filters of air conditioning system of urban buses.	Obitkova D, Cereiova C, Mraz M, Pavlik E.	Epidemiol Mikrobiol Imunol	10.61568/emi/11-6492/20250428/140416	2025
	Bacillus sp. Strain Fo03, a Phosphate Solubilizing Bacterial Strain, Promotes Potato Growth and Decrease Inorganic Fertilizer.	de la Paz-Osorio DM, de la Portilla-Lopez N, Vaca-Paulin R, Lugo-de la Fuente J, Wong-Villarreal A, Della Monica IF, Del Aguila-Juarez P, Mora-Herrera ME, Yanez-Ocampo G.	Curr Microbiol	10.1007/s00284-025-04198-x	2025
	Seed vectored bacterial endophyte Bacillus pumilus protect sorghum (Sorghum bicolor L.) seedlings from a fungal pathogen Rhizoctonia solani	Kumar K, Pal G, Verma A, Kumar D, Shukla P, Verma SK.	Biol Control		2024
	Marine Bacillus pumilus substances exhibit antimicrobial effect on multidrug-resistant Staphylococcus aureus.	Freitas-Silva J, Martins RCC, Leal CM, Mendonca SC, Cypriano JBS, Oelemann WMR, Abreu FA, Andrade-Oliveira AL, Giambiagi-deMarval M, Laport MS.	J Appl Microbiol	10.1093/jambio/lxae260	2024
	Anti-biofilm potential of some fish probiotics, alone and in combination with antibiotics against isolated aquaculture pathogens; A preliminary data.	Liaqat I, Qaiser I, Aftab MN, Ali S, Latif AA, Naseem S, Afzaal M, Khalid A.	Microb Pathog	10.1016/j.micpath.2025.107437	2025
	A new benzodioxole derivative from the marine-derived Streptomyces sp. SYPHU 0002.	Mou P, Peng Y, Zhang B, Wang P, Ni X, Xia H.	Nat Prod Res	10.1080/14786419.2024.2425058	2024
	Allelochemicals degradation and multifarious plant growth promoting potential of two Bacillus spp.: Insights into genomic potential and abiotic stress alleviation.	Iqbal S, Begum F, Manishimwe C, Rabaan AA, Sabour AA, Alshiekheid MA, Shaw P.	Chemosphere	10.1016/j.chemosphere.2025.144191	2025
	ACUTE POST-TRAUMATIC ENDOPHTHALMITIS SECONDARY TO BACILLUS PUMILUS / SAFENSIS.	Etheridge T, Swiston C, Harrie RP, Bernstein PS.	Retin Cases Brief Rep	10.1097/icb.0000000000001391	2024
	Macrolactin a is an inhibitor of protein biosynthesis in bacteria.	Vasilchenko AS, Lukyanov DA, Dilbaryan DS, Usachev KS, Poshvina DV, Taldaev AK, Nikandrova AA, Imamutdinova AN, Garaeva NS, Bikmullin AG, Klochkova EA, Rusanov AL, Romashin DD, Luzgina NG, Osterman IA, Sergiev PV, Teslya AV.	Biochimie	10.1016/j.biochi.2025.01.003	2025
	Solid rocket motor insulation adhesives with sporicidal activity promote planetary protection for deep space missions.	Williams NR, Sisk MR, Lampton TP, Justiniano YV, Harris SW, Higgins CM, Hooda ZA, Parello GZ, DeSilva AE, Cassilly CD, Bray MH, Liles MR.	Life Sci Space Res (Amst)	10.1016/j.lssr.2025.02.006	2025
	Mitigation of salinity stress via improving growth, chlorophyll contents and antioxidants defense in sunflower with Bacillus pumilis and biochar.	Tu Q, Tang S, Huang S.	Sci Rep	10.1038/s41598-025-93959-6	2025
	Biodegradation of bisphenol A by a Pichia pastoris whole-cell biocatalyst with overexpression of laccase from Bacillus pumilus and investigation of its potential degradation pathways.	Guo E, Zhao L, Li Z, Chen L, Li J, Lu F, Wang F, Lu K, Liu Y.	J Hazard Mater	10.1016/j.jhazmat.2024.134779	2024
	Synergistic Interaction Between Endophytic Bacillus pumilus and Indigenous Arbuscular Mycorrhizal Fungi Complex Improves Photosynthetic Activity, Growth, and Yield of Pisum sativum.	Akhallaa Youne M, Akhallaa Youne O, Bouskout M, Khan Y, Khassali H, Shah S, Sujat A, Alahoui H, Alfeddy MN, Mnasri B, Ouahmane L.	Plants (Basel)	10.3390/plants14131991	2025
	Complete genome sequence of Bacillus pumilus LBUM494, a plant-beneficial strain isolated from the rhizosphere of a strawberry plant.	Biessy A, Filion M.	Microbiol Resour Announc	10.1128/mra.00825-24	2024
	Microbeads as carriers for Bacillus pumilus: a biofertilizer focus on auxin production.	Benitez SV, Carrasco R, Giraldo JD, Schoebitz M.	J Microencapsul	10.1080/02652048.2024.2324812	2024
	Study of Antibiotic Resistance Potential of Spiders Bacteriota and Comparison With the Antibacterial Effect of Essential Oils.	Kacaniova M, Elizondo-Luevano JH, Ban Z, Babosova M, Porhajasova JI, Kollar J, Kowalczewski PL, Garzoli S.	Microbiologyopen	10.1002/mbo3.70145	2025
	From Glory to Decline: Uncovering Causes of Oak Decline in Iran	Jamali S, Haack R.	For Pathol		2024
	The impact of different temperatures on spore count and browning of UHT milk over a long storage period	Ferrero A, Ferrero F, Casale M, Nucera D, Novaresio M, Tabacco E, Borreani G.	Int Dairy J		2024
	Probiotic-Based Cleaning Solutions: From Research Hypothesis to Infection Control Applications.	Falagas ME, Kontogiannis DS, Sargianou M, Falaga EM, Chatzimichali M, Michaeloudes C.	Biology (Basel)	10.3390/biology14081043	2025
Enzymology	Engineering a Binding Peptide for Oriented Immobilization and Efficient Bioelectrocatalytic Oxygen Reduction of Multicopper Oxidases.	Zhang M, Wang X, Liu W, Cui X, Wang Y, Fan L, Cui H, Shen Y, Cui H, Zhang L.	ACS Appl Mater Interfaces	10.1021/acsami.4c12970	2025
	Exogenous gamma-aminobutyric acid and Bacillus pumilus reduce arsenic uptake and toxicity in rice.	Dolphen R, Thiravetyan P.	Environ Sci Pollut Res Int	10.1007/s11356-024-31893-2	2024
	Enhanced denitrification of biodegradable polymers using Bacillus pumilus in aerobic denitrification bioreactors: Performance and mechanism.	Zhang X, Song X, Cheng X, Huang Z, Dong D, Li X.	Bioresour Technol	10.1016/j.biortech.2023.130240	2024
Enzymology	High-Molecular-Weight Xylanase from B. pumilus US570 Strain: Purification, Characterization and Application in Banana and Orange Peels Hydrolysis and Breadmaking.	Elgharbi F, Salem K, Elbedoui M, Hmida-Sayari A.	Appl Biochem Biotechnol	10.1007/s12010-024-04866-x	2024
Proteome	[The Proteome of Extracellular Membrane Vesicles from Bacillus pumilus 3-19].	Kurdy W, Zelenikhin PV, Yakovleva GY, Sinyagina MN, Kolpakov AI, Ilinskaya ON.	Mol Biol (Mosk)	10.31857/s0026898424010186, edn: nrbqxz	2024
Proteome	Proteome of spores from biological indicators in sterilization processes: Bacillus pumilus and Bacillus atrophaeus.	Dorbani I, Armengaud J, Carlin F, Duport C.	Proteomics	10.1002/pmic.202300293	2024
	Endophytic Bacillus pumilus G5 Interacting with Silicon to Improve Drought Stress Resilience in Glycyrrhiza uralensis Fisch. by Modulating Nitrogen Absorption, Assimilation, and Metabolism Pathways.	Xu Z, Bai Q, Peng X, Lang D, Zhang X.	J Agric Food Chem	10.1021/acs.jafc.4c00282	2024
	Risk analysis of microorganisms in common food spices.	Tang X.	Front Microbiol	10.3389/fmicb.2025.1549719	2025
	Co-existence of Metal Transporter Genes and Heavy Metal Bioremediation Potential of Bacterial Strains from the Effluent Water.	Kaur H, Katyal P, Natt SK, Vikal Y, Chandel S.	Indian J Microbiol	10.1007/s12088-024-01362-y	2025
	Preparation of Bacillus pumilus loaded electrosprayed nanoparticles as a plant protective against postharvest fungal decay	Vehapi M, Inan B, Kayacan-Cakmakoglu S, Sagdic O, Ozcimen DB.	Eur J Plant Pathol	10.1007/s10658-023-02738-4	2024
	Deciphering the ABA and GA biosynthesis approach of Bacillus pumilus, mechanistic approach, explaining the role of metabolic region as an aid in improving the stress tolerance.	Shaffique S, Shah AA, Odongkara P, Elansary HO, Khan AL, Adhikari A, Kang SM, Lee IJ.	Sci Rep	10.1038/s41598-024-78227-3	2024
	Degradation of Plastic Beads Containing Low Density Polyethylene (LDPE) by Sequential Photolysis, Hydrolysis and Bacterial Isolates.	Banerjee D, Patel C, Patel K.	Bull Environ Contam Toxicol	10.1007/s00128-024-03853-6	2024
	[Redox Status and Protein Glutathionylation in Binase-Treated HPV16-Positive SiHa Carcinoma Cells].	Nadyrova AI, Petrushanko IY, Mitkevich VA, Ilinskaya ON.	Mol Biol (Mosk)	10.31857/s0026898424050109, edn: hufeuw	2024
	Isolation and comparative analysis of culturable bacterial communities associated with life stages, breeding and rearing substrates of Culicoides oxystoma Kieffer (Diptera: Ceratopogonidae) vector of bluetongue virus.	Sarkar A, Banerjee P, Mazumdar A.	Med Vet Entomol	10.1111/mve.12754	2024
	Topological transformation of microbial proteins into iron single-atom sites for selective hydrogen peroxide electrosynthesis.	Xiao X, Zhuang Z, Yin S, Zhu J, Gan T, Yu R, Wu J, Tian X, Jiang Y, Wang D, Zhao F.	Nat Commun	10.1038/s41467-024-55041-z	2024
	Exploring quinoxaline derivatives: An overview of a new approach to combat antimicrobial resistance.	Khatoon H, Mohd Faudzi SM.	Eur J Med Chem	10.1016/j.ejmech.2024.116675	2024
	Proteomic investigation reveals the role of bacterial laccase from Bacillus pumilus in oxidative stress defense.	Li B, Jin Z, Yang F, Li H, Liu J, Jiang Z.	J Proteomics	10.1016/j.jprot.2023.105047	2024
	In Situ Synthesis of Exfoliated Ni(OH)₂ Nanosheets and AgNPs-Embedded Functionalized Polyindole-Based Trinary Hybrid Microspheres: A Z-Scheme Photocatalyst for the Sunlight-Driven Degradation of Organic Pollutants with Enhanced Antibacterial Efficacy.	Singha K, Kumari G, Jagadevan S, Sarkar AN, Pal S.	Langmuir	10.1021/acs.langmuir.4c01293	2024
Pathogenicity	Disrupted gut microbiota promotes the progression of chronic kidney disease in 5/6 nephrectomy mice by Bacillus pumilus gavage.	Chen F, Zhang H, Wei Q, Tang J, Yin L, Ban Y, Zhou Q.	Front Cell Infect Microbiol	10.3389/fcimb.2025.1548767	2025
	Enhancement of Tomato Growth Through Rhizobacteria and Biocontrol of Associated Diseases.	El Hjouji H, Qessaoui R, Chafiki S, Mayad EH, Houmairi H, Dari K, Bencharki B, Aassila H.	Life (Basel)	10.3390/life15070997	2025
	Development of a composite microbial agent beneficial to improve drought and salt tolerance of Glycyrrhiza uralensis Fisch.	Peng X, Jia T, Bai Q, Lang D, Zhang X.	Industrial crops and products.		2024
	Effects of Bacillus pumilus on growth performance, serum indexes and muscle development-related gene expression of weanling Jintang black goat.	Zhang N, Ding J, Li J, Wang L, Wei Y.	Benef Microbes	10.1163/18762891-20220093	2023
	Volatile Organic Compounds of Bacillus pumilus Strain S1-10 Exhibit Fumigant Activity Against Meloidogyne incognita.	Dai MM, Liu R, Jiang H, Zhang XP, Song WW, Zhang J, Liang C, Zhao HH, Shi QQ.	Plant Dis	10.1094/pdis-10-22-2391-re	2023
	2-Keto-L-gulonic acid inhibits the growth of Bacillus pumilus and Ketogulonicigenium vulgare	Zhang Q, Lyu S.	World J Microbiol Biotechnol.		2023
Proteome	UV-C and hydration state drive pulsed light-induced proteome damage in Bacillus pumilus spores.	Dorbani I, Armengaud J, Carlin F, Duport C.	Front Microbiol	10.3389/fmicb.2025.1579161	2025
	Influence of Naturally Occurring Bacteria on Embryonic and Larval Development of Common Toad Tadpoles.	Jovanovic Glavas O, Svilicic Petric I, Palijan G.	Biology (Basel)	10.3390/biology14030308	2025
	Engineering a Carotenoid Cleavage Oxygenase for Coenzyme-Free Synthesis of Vanillin from Ferulic Acid.	Zheng R, Chen Q, Yang Q, Gong T, Hu CY, Meng Y.	J Agric Food Chem	10.1021/acs.jafc.4c01688	2024
Enzymology	Chitosanase-immobilized magnetite-agar gel particles as a highly stable and reusable biocatalyst for enhanced production of physiologically active chitosan oligosaccharides.	Kuroiwa T, Nakagawa Y, Takayanagi R, Kanazawa A.	Enzyme Microb Technol	10.1016/j.enzmictec.2024.110443	2024
Pathogenicity	Prediction and validation of enzymatic degradation of aflatoxin M₁: Genomics and proteomics analysis of Bacillus pumilus E-1-1-1 enzymes.	Liu X, Zhao F, Wang X, Chen S, Qu J, Sang Y.	Sci Total Environ	10.1016/j.scitotenv.2023.165720	2023
	Genome Mining Reveals Pathways for Terpene Production in Aerobic Endospore-Forming Bacteria Isolated from Brazilian Soils.	Mesquita FA, Silva WMCD, Raiol T, Brigido MM, Almeida NF, Fuga B, Cavalcante DA, De-Souza MT.	Microorganisms	10.3390/microorganisms13112528	2025
	Characterization of pumilacidin, a lipopeptide biosurfactant produced from Bacillus pumilus NITDID1 and its prospect in bioremediation of hazardous pollutants.	Dasgupta A, Saha S, Ganguli P, Das I, De D, Chaudhuri S.	Arch Microbiol	10.1007/s00203-023-03619-4	2023
	Tetrahydrobiopterin from cyanide-degrading bacterium Bacillus pumilus strain SVD06 induces apoptosis in human lung adenocarcinoma cell (A549).	Mahendran R, Selvaraj SP, Dhanapal AR, Sarasa SB, Mathias BM, Thankappan B, Femil Selta DR, Naveen P, Poorani R, Sundhar N, Pillai MM, Selvakumar R, Huang CY, Eswaran R, Angayarkanni J.	Biotechnol Appl Biochem	10.1002/bab.2509	2023
	Diversity of culturable bacterial isolates and their potential as antimicrobial against human pathogens from Afar region, Ethiopia.	Demisie S, Oh D-C, Wolday D, Rinke de Wit TF, Abera A, Tasew G, Shenkutie AM, Girma S, Tafess K.	Microbiol Spectr	10.1128/spectrum.01810-24	2024
	2-Keto-L-gulonic acid inhibits the growth of Bacillus pumilus and Ketogulonicigenium vulgare.	Zhang Q, Lyu S.	World J Microbiol Biotechnol	10.1007/s11274-023-03700-6	2023
Genetics	Harnessing an anti-CRISPR protein for powering CRISPR/Cas9-mediated genome editing in undomesticated Bacillus strains.	Kim MS, Jeong DE, Choi SK.	Microb Cell Fact	10.1186/s12934-025-02776-z	2025
	A single residue affects the dynamics and shape of a tetrameric GH43 beta-1,4-d-xylosidase from Levilactobacillus brevis DSM1269.	Linares-Pasten JA, Faryar R, Torrez Alvarez S, Albasri K, Shuoker B, Abou Hachem M, Logan DT, Karlsson EN.	Protein Sci	10.1002/pro.70299	2025
Pathogenicity	Probiotic Bacillus pumilus LV149 enhances gut repair, modulates microbiota, and alters transcriptome in DSS-induced colitis mice.	Sun X, Yun L, Xie K, Liu R, Ren X, Zeng B, Cao X, Li Z, Zhou G, Liu B, Peng L, Yuan L.	Front Microbiol	10.3389/fmicb.2024.1507979	2024
	Screening, Identification, and Probiotic Properties of Bacillus Pumilus From Yak.	Lei J, Ran X, Guo M, Liu J, Yang F, Chen D.	Probiotics Antimicrob Proteins	10.1007/s12602-023-10054-w	2024
	Survival by Selection: The Role of Natural Selection in Developing Biological Radiation Defenses.	Mortazavi SA, Said-Salman I, Khatib SE, Taghizadeh P, Mortazavi SMJ, Sihver L.	J Biomed Phys Eng	10.31661/jbpe.v0i0.2405-1764	2025
	Characterization and Optimization of Cellulose-Degrading Bacteria Isolated from Fecal Samples of Elaphurus davidianus Through Response Surface Methodology.	Wu H, Shi C, Xu T, Dai X, Zhao D.	Microorganisms	10.3390/microorganisms13020348	2025
Transcriptome	Transcriptome analysis reveals the regulatory effects of Bacillus amyloliquefaciens and Bacillus pumilus on immune and digestive related genes in the spleen of weanling black goats.	Zhang N, Li J, Wang L, Wei Y, Emu Q, Xu F, Zhang L.	Funct Integr Genomics	10.1007/s10142-023-01025-z	2023
	Analysis of the Culturable Skin Microbiome of Horses from Southern Germany.	Matinpour M, Zettner N, Neumann K, Baumer L, Burkovski A.	Microorganisms	10.3390/microorganisms13030623	2025
	Multidrug-resistant Bacillus species isolated from hospital soil environment is controlled by nanobiotics incorporated nanoformulation.	Soundhararajan R, Srinivasan H.	Environ Res	10.1016/j.envres.2024.118122	2024
	Synergistic remediation of oil-water mixtures: integration of nanoparticles and oil-degrading bacteria in a novel approach.	El-Sesy ME, Ibrahim SS, Yang F, Hegazy A.	Front Microbiol	10.3389/fmicb.2025.1590636	2025
	Bacteria associated with carminic acid metabolism in the intestinal tract of three predators of Dactylopius opuntiae	Martinez-Martinez S, Rodriguez-Leyva E, Aranda-Ocampo S, Santillan-Galicia MT, Hernandez-Lopez A, Guzman-Franco AW.	Entomol Exp Appl	10.1111/eea.13394	2024
	Enhancing the efficiency and functionality of xylanase from Bacillus sp. RTS11: Optimization, purification, characterization, and prospects in kraft pulp bleaching.	Sahnoun S, Yahiaoui B, Benlounissi A, Mouffok A, Ernst B, Alam M, Houali K, Benguerba Y.	Cell Mol Biol (Noisy-le-grand)	10.14715/cmb/2024.70.1.10	2024
	Halotolerant plant growth-promoting bacteria, Bacillus pumilus, modulates water status, chlorophyll fluorescence kinetics and antioxidant balance in salt and/or arsenic-exposed wheat.	Ozfidan-Konakci C, Arikan B, Alp-Turgut FN, Balci M, Uysal A, Yildiztugay E.	Environ Res	10.1016/j.envres.2023.116089	2023
	Susceptibility of extremophiles to far-UVC light for bioburden reduction in spacecraft assembly facilities.	Petersen C, Buonanno M, Guan L, Hinzer A, Urbano J, Hashmi R, Shuryak I, Parker C, Welch D.	Life Sci Space Res (Amst)	10.1016/j.lssr.2024.01.006	2024
	Emerging prospects of Bacillus species in attaining the sustainable development goals.	Kumar H, Guleria S, Kuca K, Peter L, Mohammed A, Malik T, Sethi N, Dhanjal DS, Kumar D, Harun HBC.	Appl Microbiol Biotechnol	10.1007/s00253-025-13634-8	2025
	Impact of Ultra-High-Pressure Homogenisation on the Inactivation of Bacillus pumilus and Bacillus subtilis Spores in Sheep and Cow Milk.	Antony A, Soni A, Samuelsson LM, Weeks M, Woo MW, Quek SY, Farid M, Gupta T.	Foods	10.3390/foods13213452	2024
	Plant growth promoting Bacillus species elicit defense against Meloidogyne incognita infecting tomato in polyhouse.	M D, Kamra A, Singh D, Gawade B, Sirohi A.	J Basic Microbiol	10.1002/jobm.202300146	2023
	Bacillus pumilus cellulitis with bacteremia in a person who injects drugs, living with HIV-HCV co-infection: a case report.	Neves-Maia J, Ramos MJ, Cruz H, Meireles M.	Access Microbiol	10.1099/acmi.0.000398	2024
	Dynamics of bacterial community, metabolites profile and physicochemical characteristics during solid-state fermentation of soybean meal and corn mixed substrates inoculated with Bacillus pumilus and Limosilactobacillus fermentum.	Huang J, Dai Y, Zhang Y, Liu G, Peng F, Xie M, Xiong T.	J Sci Food Agric	10.1002/jsfa.12639	2023
	Statistical optimization of process variables for improved poly(ethylene terephthalate) plastic degradation by a rhizospheric bacterial consortium.	Dhaka V, Singh S, Rao R, Garg S, Samuel J, Khan NA, Ramamurthy PC, Singh J.	Sci Rep	10.1038/s41598-025-88084-3	2025
	Isolation and characterization of PGPR obtained from different arsenic-contaminated soil samples and their effect on photosynthetic characters of maize grown under arsenic stress.	Waheed Z, Iqbal S, Irfan M, Jabeen K, Ilyas N, Al-Qahtani WH.	Environ Sci Pollut Res Int	10.1007/s11356-024-31972-4	2024
	Enhancement in the Catalytic Properties of CotA Laccase from Bacillus pumilus via High-Throughput Screening Using Malachite Green as a Pressure.	Li X, Tian J, Ren X, Wang J, Liu X.	Microorganisms	10.3390/microorganisms13020377	2025
	Biocontrol Potential of Rhizosphere Bacteria Against Fusarium Root Rot in Cowpea: Suppression of Mycelial Growth and Conidial Germination.	Zhu Q, Ma Y, Zhang T, Liu W, Zhang S, Chen Y, Peng D, Zhang X.	Biology (Basel)	10.3390/biology14080921	2025
	Bacterial eradication by a low-energy pulsed electron beam generator.	Da Silva C, Lamarche C, Pichereaux C, Mouton-Barbosa E, Demol G, Boisne S, Dague E, Burlet-Schiltz O, Pillet F, Rols MP.	Bioelectrochemistry	10.1016/j.bioelechem.2023.108593	2024
	[Efficiency of Escherichia coli and Bacillus subtilis Expression Systems for Production of Binase Mutants].	Nadyrova AI, Kosnyrev AS, Ulyanova VV, Dudkina EV, Vershinina VI, Ilinskaya ON.	Mol Biol (Mosk)	10.31857/s0026898423050154, edn: yxonyn	2023
	Enzymatic Oxidation of Aflatoxin M₁ in Milk Using CotA Laccase.	Guo Y, Lv H, Rao Z, Wang Z, Zhang W, Tang Y, Zhao L.	Foods	10.3390/foods13223702	2024
	Development of a highly degenerate primer-based molecular tool for detecting and classifying the four major classes of polyhydroxyalkanoate synthase (phaC) genes in bacteria.	Ibrahim Osman A, Noble B, Percy L, Basnett P.	Microb Cell Fact	10.1186/s12934-025-02831-9	2025
	Effects of Paecilomyces lilacinus and Bacillus pumilus on stem nematode and rhizosphere bacterial communities of sweet potato.	Shi F, Yang D, Meng X, Li J, Zhu Y, Liu J.	Sci Rep	10.1038/s41598-024-74268-w	2024
Genetics	Genomic Characterization of Bacillus pumilus Sonora, a Strain with Inhibitory Activity against Vibrio parahaemolyticus-AHPND and Probiotic Candidate for Shrimp Aquaculture.	Soto-Marfileno KA, Molina Garza ZJ, Flores RG, Molina-Garza VM, Ibarra-Gamez JC, Gil BG, Galaviz-Silva L.	Microorganisms	10.3390/microorganisms12081623	2024
Pathogenicity	Effects of a multistrain Bacillus-based direct-fed microbial on gastrointestinal permeability and biomarkers of inflammation during and following feed restriction in mid-lactation Holstein cows.	Goetz BM, Abeyta MA, Rodriguez-Jimenez S, Opgenorth J, McGill JL, Fensterseifer SR, Arias RP, Lange AM, Galbraith EA, Baumgard LH.	J Dairy Sci	10.3168/jds.2023-24352	2024
	Immunostimulatory activity of inactivated environmental Bacillus isolates and their endospores.	Dekeukeleire M, Vandenheuvel D, Khondee T, Delanghe L, Van Rillaer T, Thys S, Timmermans JP, Lebeer S, Spacova I.	Sci Rep	10.1038/s41598-025-12833-7	2025
	Unveiling the genetic basis of biochemical pathways of plant growth promotion in Bacillus pumilus and the first genomic insights into B. pseudomycoides as a biostimulant.	Dushku E, Kotzamanidis C, Kargas A, Fanara-Lolou ME, Giantzi V, Krystallidou E, Zdragas A, Malousi A.	Curr Res Microb Sci	10.1016/j.crmicr.2025.100419	2025
	Monitoring and Management of Infection following Prepectoral Implant-based Breast Reconstruction: Retrospective Analysis of Conservative Treatment Versus Implant Removal.	Walz SN, Martineau J, Kalbermatten DF, Oranges CM.	Plast Reconstr Surg Glob Open	10.1097/gox.0000000000006516	2025
	Protein Nanocages as Building Blocks for Conjugated Supramolecular Materials Displaying Multitasking Properties.	Santillan-Uribe HC, Soto-Valerio IA, Leon-Contreras JC, Bustos-Jaimes I.	Appl Biochem Biotechnol	10.1007/s12010-025-05364-4	2025
	Effect of Juniperus communis extract on probiotic properties of Bacillus safensis isolated from camel milk in the region of El Oued (Algeria).	Layadi I, Laiche AT, Tlili ML, Messaoudi M, Ghemam Amara D, Mezghani-Khemakhem M, Naccache C, Sawicka B, Atanassova M, Zahnit W, Ahmad SF.	Food Sci Nutr	10.1002/fsn3.4262	2024
Genetics	Characterizing the gut microbiome of birds-of-paradise in the northwest lowland of Papua Island.	Safika S, Indrawati A, Hidayat R, Puarada ARR.	Open Vet J	10.5455/ovj.2024.v14.i12.19	2024
	Optimization and comparative study of Bacillus consortia for cellulolytic potential and cellulase enzyme activity.	Chukwuma OB, Rafatullah M, Kapoor RT, Tajarudin HA, Ismail N, Alam M, Siddiqui MR.	Open Life Sci	10.1515/biol-2025-1066	2025
Enzymology	Functional Characterization of Two Glutamate Dehydrogenase Genes in Bacillus altitudinis AS19 and Optimization of Soluble Recombinant Expression.	Wang F, Lv X, Guo Z, Wang X, Long Y, Liu H.	Curr Issues Mol Biol	10.3390/cimb47080603	2025
	Deciphering the alkaline stable mechanism of bacterial laccase from Bacillus pumilus by molecular dynamics simulation can improve the decolorization of textile dyes.	Liu J, Li B, Li Z, Yang F, Chen B, Chen J, Li H, Jiang Z.	J Hazard Mater	10.1016/j.jhazmat.2022.130370	2023
	Survival of different microbial strains in pure and diluted tattoo inks.	Briancesco R, Paduano S, Paradiso R, Semproni M, Bonadonna L.	Lett Appl Microbiol	10.1093/lambio/ovad078	2023
	Assessment of bioaerosol composition and public health implications in high-traffic urban areas of Southwest, Nigeria.	Odeyemi DA, Alao JO, Kayode TA, Durugbo EU.	Environ Res Commun	10.1088/2515-7620/ad9e87	2024
	Characterization of Honey Microbiome Using MALDI-TOF Mass Spectrometry and Physicochemical Study.	Blonska D, Buszewski B.	Molecules	10.3390/molecules30061266	2025
Proteome	Identification and characterization of a novel bacteriocin gene cluster in Lysinibacillus boronitolerans.	Tang Y, Lei J, Ma X, Li J, Li H, Liu Z.	Biotechnol Appl Biochem	10.1002/bab.2488	2023
	Assessment of biofilm, enzyme production and antibiotic susceptibility of bacteria from milk pre- and post-pasteurization pipelines in Algeria.	Didouh N, Khadidja M, Campos C, Sampaio-Maia B, Boumediene MB, Araujo R.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2023.110389	2023
	A critical assessment of microbial-based antimicrobial sanitizing of inanimate surfaces in healthcare settings.	Fijan S, Kurti P, Rozman U, Sostar Turk S.	Front Microbiol	10.3389/fmicb.2024.1412269	2024
	Differential effects of rhizobacteria from uninfected and infected tomato on Meloidogyne incognita under protected cultivation.	Gowda MT, Prasanna R, Kundu A, Rana VS, Rao U, Chawla G.	J Basic Microbiol	10.1002/jobm.202200695	2023
	Epibiotic bacterial community composition varies during different developmental stages of Octopus mimus: Study of cultivable representatives and their secondary metabolite production.	Hengst MB, Trench S, Alcayaga V, Sepulveda-Munoz C, Borquez J, Simirgiotis M, Valenzuela F, Lody M, Kurte L, Pardo-Este C.	PLoS One	10.1371/journal.pone.0312991	2024
Enzymology	Larvicidal, antioxidant and biotoxicity assessment of (2-(((2-ethyl-2 methylhexyl)oxy)carbonyl)benzoic acid isolated from Bacillus pumilus against Aedes aegypti, Anopheles stephensi and Culex quinquefasciatus.	Raguvaran K, Kalpana M, Manimegalai T, Kalaivani S, Devapriya P, Siddharthan N, Balakrishnan R, Silambarasan TS, Maheswaran R.	Arch Microbiol	10.1007/s00203-022-03264-3	2022
Pathogenicity	The impact of bacillus pumilus TS2 isolated from yaks on growth performance, gut microbial community, antioxidant activity, and cytokines related to immunity and inflammation in broilers.	Guo C, Liu S, Di L, Tang S.	Front Vet Sci	10.3389/fvets.2024.1383262	2024
	Evaluating the antibacterial properties of deep-sea sponges Dactylospongia elegants, Stelletta fibrosa, and Haliclona manglaris from the Jordanian Gulf of Aqaba.	Abuassaf RA, Al-Jamal FF, Abusara OH, Zihlif M, Deeb AA, Al-Rshaidat MMD.	PeerJ	10.7717/peerj.19735	2025
Proteome	Bacillus pumilus proteome changes in response to 2,4,6-trinitrotoluene-induced stress.	Yakovleva G, Kurdy W, Gorbunova A, Khilyas I, Lochnit G, Ilinskaya O.	Biodegradation	10.1007/s10532-022-09997-8	2022
	Withanolides from Discopodium penninervium.	Bedane KG, Desta MA, Spiteller P.	Fitoterapia	10.1016/j.fitote.2023.105478	2023
	A study of bacteria producing carbonic anhydrase enzyme for CaCO₃ precipitation and soil biocementation.	Mwandira W, Mavroulidou M, Timmermans M, Gunn MJ, Gray C, Pantoja-Munoz L, Purchase D.	Environ Sci Pollut Res Int	10.1007/s11356-024-34077-0	2024
	Bacillus pumilus 315 improves intestinal microbiota and barrier function to alleviate diarrhea of neonatal goats.	Fan D, Jiao S, Fu Y, Zhang J, Zhuang Y, Huang J, Bi Y, Zhang J, Zhang N.	Anim Nutr	10.1016/j.aninu.2024.10.008	2025
	Searching for Antimicrobial-Producing Bacteria from Soils through an Educational Project and Their Evaluation as Potential Biocontrol Agents.	Pino-Hurtado MS, Fernandez-Fernandez R, Torres C, Robredo B.	Antibiotics (Basel)	10.3390/antibiotics13010029	2023
	Taxonomical, functional, and cytopathological characterization of Bacillus spp. from Lake Magadi, Kenya, against Rhizoctonia solani Kühn in Phaseolus vulgaris L.	Wekesa TB, Wafula EN, Kavesu N, Sangura RM.	J Basic Microbiol	10.1002/jobm.202300038	2023
	Uncommon Septic Arthritis of the Hip Joint in an Immunocompetent Adult Patient Due to Bacillus pumilus and Paenibacillus barengoltzii Managed with Long-Term Treatment with Linezolid: A Case Report and Short Literature Review.	Cismasiu RS, Birlutiu RM, Preotescu LL.	Pharmaceuticals (Basel)	10.3390/ph16121743	2023
	Draft genome sequences of Bacillus pumilus 36R ATNSAL and B. safensis 13L LOBSAL, two potential candidate probiotic strains for shrimp aquaculture.	Sanchez-Diaz R, Molina-Garza ZJ, Cruz-Suarez LE, Selvin J, Kiran GS, Gomez-Gil B, Galaviz-Silva L, Ibarra-Gamez JC.	J Glob Antimicrob Resist	10.1016/j.jgar.2022.10.002	2022
	Synergistic Mutations Create Bacillus Subtilisin Variants with Enhanced Poly-l-Lactic Acid Depolymerization Activity.	Cannon JA, Reynolds TB.	Biomacromolecules	10.1021/acs.biomac.2c01198	2023
	Bacillus pumilus PTB180 and Bacillus subtilis PTB185: Production of lipopeptides, antifungal activity, and biocontrol ability against Botrytis cinerea	Bouchard-Rochette M, Machrafi Y, Cossus L, Thuy An Nguyen T, Antoun H, Droit A, Tweddell RJ.	Biol Control	10.1016/j.biocontrol.2022.104925	2022
	Siderophores of Bacillus pumilus promote 2-keto-L-gulonic acid production in a vitamin C microbial fermentation system.	Zhang Q, Lin Y, Shen G, Zhang H, Lyu S.	J Basic Microbiol	10.1002/jobm.202200237	2022
	Influences of Bacillus pumilus SA388 as an environmentally friendly antibiotic alternative on growth performance, blood biochemistry, immunology, cecal microbiota, and meat quality in broiler chickens.	Beyari EA, Alshammari NM, Alamoudi SA, Mohamed AS, Altarjami LR, Baty RS, Alqadri N, Al-Nazawi AM, Saad AM, Taha TF, El-Saadony MT, El-Tarabily KA, Mostafa NG.	Poult Sci	10.1016/j.psj.2024.104115	2024
Phenotype	Phenotypic Profiling of Selected Cellulolytic Strains to Develop a Crop Residue-Decomposing Bacterial Consortium.	Shamshitov A, Satkeviciute E, Decorosi F, Viti C, Suproniene S.	Microorganisms	10.3390/microorganisms13010193	2025
Genetics	Pangenome analyses of Bacillus pumilus, Bacillus safensis, and Priestia megaterium exploring the plant-associated features of bacilli strains isolated from canola.	Bach E, Rangel CP, Ribeiro IDA, Passaglia LMP.	Mol Genet Genomics	10.1007/s00438-022-01907-0	2022
	Probiotic Potential of Bacillus licheniformis and Bacillus pumilus Isolated from Tibetan Yaks, China.	Zeng Z, Zhang J, Li Y, Li K, Gong S, Li F, Wang P, Iqbal M, Kulyar MF, Li J.	Probiotics Antimicrob Proteins	10.1007/s12602-022-09939-z	2022
	Modulation of Cd carriers by innovative nanocomposite (Ca+Mg) and Cd-resistance microbes (Bacillus pumilus): a mechanistic approach to enhance growth and yield of rice (Oryza sativa L.).	Ali MA, Nafees M, Waseem M, Alomrani SO, Al-Ghanim KA, Alshehri MA, Zheng H, Ali S, Li F.	Front Plant Sci	10.3389/fpls.2024.1387187	2024
	MALDI-TOF Mass Spectrometry Characterization of Culturable Microbiota Associated with the Skin of Amphibians from the Southern Andes Mountains of Ecuador.	Salazar J, Gonzalez J, Riofrio R, Siavichay F, Carrera M, Mogrovejo A, Barrera-Galicia G, Valdez-Tenezaca A.	Microb Ecol	10.1007/s00248-025-02555-8	2025
	Biosynthesis, characterization and study of the application of silver nanoparticle for 4-nitrophenol reduction, and antimicrobial activities.	Mulu M, Tefera M, Guadie A, Basavaiah K.	Biotechnol Rep (Amst)	10.1016/j.btre.2024.e00838	2024
Transcriptome	Multi-omics analysis reveals the host-microbe interactions on the dysbiosis of tissue microbiota in male genital lichen sclerosus-induced urethral strictures.	Yu Z, Wang Z, Mao G, Tang J, Zhang R, Song L, Xiu X.	Microbiol Spectr	10.1128/spectrum.00074-25	2025
	Optimization of 1,3-propanediol production from fermentation of crude glycerol by immobilized Bacillus pumilus.	Pinyaphong P, La-Up A.	Heliyon	10.1016/j.heliyon.2024.e35349	2024
	Identification of Naturally Occurring Inhabitants of Vaginal Microbiota in Cows and Determination of Their Antibiotic Sensitivity.	Varhidi Z, Jurkovich V, Satorhelyi P, Erdelyi B, Palocz O, Csiko G.	Vet Sci	10.3390/vetsci12050423	2025
	Effective removal of Pb(II) and Ni(II) ions by Bacillus cereus and Bacillus pumilus: An experimental and mechanistic approach.	Sharma R, Jasrotia T, Umar A, Sharma M, Sharma S, Kumar R, Alkhanjaf AAM, Vats R, Beniwal V, Kumar R, Singh J.	Environ Res	10.1016/j.envres.2022.113337	2022
	Bacterial Diversity and Antimicrobial Resistance of Microorganisms Isolated from Teat Cup Liners in Dairy Farms in Shandong Province, China.	Yan G, Wang S, Cui Y, Xue K, Liu Y, Liu J.	Animals (Basel)	10.3390/ani14152167	2024
	The Global Prevalence of Bacillus spp. in Milk and Dairy Products: A Systematic Review and Meta-Analysis	Sun T, Wang R, Sun Y, Zhang X, Ge C, Li Y.	Foods		2025
	Mycorrhiza helper bacterium Bacillus pumilus HR10 improves growth and nutritional status of Pinus thunbergii by promoting mycorrhizal proliferation.	Wang YH, Hou LL, Wu XQ, Zhu ML, Dai Y, Zhao YJ.	Tree Physiol	10.1093/treephys/tpab139	2022
	Improvement of Sphaeropsis Shoot Blight Disease Resistance by Applying the Ectomycorrhizal Fungus Hymenochaete sp. Rl and Mycorrhizal Helper Bacterium Bacillus pumilus HR10 to Pinus thunbergii.	Wang YH, Dai Y, Kong WL, Zhu ML, Wu XQ.	Phytopathology	10.1094/phyto-09-21-0392-r	2022
	Copper biosorption by Bacillus pumilus OQ931870 and Bacillus subtilis OQ931871 isolated from Wadi Nakheil, Red Sea, Egypt.	Danial AW, Dardir FM.	Microb Cell Fact	10.1186/s12934-023-02166-3	2023
	Efficient synthesis of Ala-Tyr by L-amino acid ligase coupled with ATP regeneration system.	Cui X, Du X, Zhao Q, Hu Y, Tian C, Song W.	Appl Biochem Biotechnol	10.1007/s12010-023-04365-5	2023
	Expression of defense responsive genes in tripartite interaction of cucumber mosaic virus and plant growth promoting rhizobacteria in ridge gourd (Luffa acutangula (L.) Roxb)	Karthikeyan G, Barkavi G, Harish S, Varanavasiappan S.	Physiol Mol Plant Pathol		2023
	Optimizing laccase selection for enhanced outcomes: a comprehensive review.	Abdi Dezfouli R, Esmaeilidezfouli E.	3 Biotech	10.1007/s13205-024-04015-5	2024
	Textile wastewater phytoremediation using Spirodela polyrhiza (L.) Schleid. assisted by novel bacterial consortium in a two-step remediation system.	Parihar A, Malaviya P.	Environ Res	10.1016/j.envres.2023.115307	2023
Transcriptome	Synergistic alleviation effects of salt-tolerant plant growth-promoting rhizobacteria and hydrogen-rich water on salt stress in Pennisetum giganteum.	Chu S, Xu T, Feng Y, Ma X, Shu R, Wang R, Wang Y, Jin D, Chi Y, Zhou P, Zhang D.	Front Plant Sci	10.3389/fpls.2025.1702577	2025
Genetics	Characterization and comparative genomic analysis of a marine Bacillus phage reveal a novel viral genus.	Jin M, Yu M, Feng X, Li Y, Zhang M.	Microbiol Spectr	10.1128/spectrum.00037-24	2024
Genetics	Genome sequence analysis and characterization of Bacillus altitudinis B12, a polylactic acid- and keratin-degrading bacterium.	Bordel S, Martin-Gonzalez D, Munoz R, Santos-Beneit F.	Mol Genet Genomics	10.1007/s00438-022-01989-w	2023
	Bioprospecting of soil-borne microorganisms and chemical dereplication of their anti-microbial constituents with the aid of UPLC-QTOF-MS and molecular networking approach.	Khwathisi A, Madala NE, Traore AN, Samie A.	PeerJ	10.7717/peerj.17364	2024
	Novel Organomineral Complex with Prolonged Antitumor Action.	Ilinskaya O, Yakovleva G, Zelenikhin P, Kolpakov A, Kurdy W, Glukhov M, Sedov I, Kharintsev S.	Int J Mol Sci	10.3390/ijms26189205	2025
Phylogeny	Degradation of SDS by psychrotolerant Staphylococcus saprophyticus and Bacillus pumilus isolated from Southern Ocean water samples.	Arora J, Chauhan A, Ranjan A, Rajput VD, Minkina T, Zhumbei AI, Kumari A, Jindal T, Prasad R.	Braz J Microbiol	10.1007/s42770-024-01294-1	2024
	Engineering non-conserved salt bridges in GH11 xylanase from Bacillus pumilus SSP34 for improved thermal stability: an in-silico evaluation.	Krishna Bhat S, Purushothaman K, Gopala Rao Appu Rao AR, Kini KR.	J Biomol Struct Dyn	10.1080/07391102.2021.2012515	2023
Genetics	Unlocking Nature's Microbial Defenders: Genetic Mechanisms and Potential Against Monilinia spp. Pathogens.	Kolytaite A, Mazeikiene I, Kurgonaite M, Rakleviciute S, Paskeviciute G, Frercks B.	Microorganisms	10.3390/microorganisms13040818	2025
	Isolation and molecular identification of cellulose/hemicellulose degrading bacteria from agricultural compost and determination of their hydrolytic potential	Menshawy MN, Abdel-Hamid AM, Mohamed SK, El-Katatny MH.	S Afr J Bot		2022
	Characterization of Microbiome Diversity in the Digestive Tract of Penaeus vannamei Fed with Probiotics and Challenged with Vibrio parahaemolyticus Acute Hepatopancreatic Necrosis Disease.	Galaviz-Silva L, Rodriguez de la Fuente AO, Gomez-Flores R, Ibarra-Gamez JC, Luna-Cruz IE, Elizondo-Luevano JH, Sanchez-Diaz R, Molina Garza ZJ.	Pathogens	10.3390/pathogens14040320	2025
	Genomic analysis of a new type VI secretion system in Vibrio parahaemolyticus and its implications for environmental adaptation in shrimp ponds.	Wang R, Xiao J, Wang Q, Zhao W, Liu X, Liu Y, Fu S.	Can J Microbiol	10.1139/cjm-2022-0096	2023
	[Combination of RNase Binase and AKT1/2 Kinase Inhibitor Blocks Two Alternative Survival Pathways in Kasumi-1 Cells].	Mitkevich VA, Petrushanko IY, Engelhardt MG, Kechko OI, Makarov AA.	Mol Biol (Mosk)	10.31857/s002689842205010x	2022
	"Dot in a Circle": a Useful Ultrasound Finding for a Rapid Diagnosis of Mycetoma.	Maione V, Cozzi C, Venturini M, Napolitano A, Calzavara-Pinton P.	Dermatol Pract Concept	10.5826/dpc.1302a102	2023
	Are radiopharmaceuticals self-sterilizing? Radiation effect of gallium-68 and lutetium-177 on bacillus pumilus and staphylococcus succinus.	Poetzsch S, Brenner W, Spreckelmeyer S.	Nuklearmedizin	10.1055/a-1547-0628	2021
	Modulating the production of xylanase by Bacillus pumilus BS131 through optimization using waste fiber sludge.	Kalim B, Ali NM, Iqbal A, Zahid MT, Rehman S, Bashir N, Ali R.	Braz J Biol	10.1590/1519-6984.243874	2021
	Root-secreted nucleosides: signaling chemoattractants of rhizosphere bacteria.	Keren G, Yehezkel G, Satish L, Adamov Z, Barak Z, Ben-Shabat S, Kagan-Zur V, Sitrit Y.	Front Plant Sci	10.3389/fpls.2024.1388384	2024
	Antibacterial effect of ethanolic Gnetum gnemon L. leaf extract on food-borne pathogens and its application as a natural preservative on raw quail eggs.	Trisha MR, Deavyndra Gunawan V, Wong JX, Pak Dek MS, Rukayadi Y.	Heliyon	10.1016/j.heliyon.2024.e35691	2024
	Potential of Bacillus pumilus to directly promote plant growth.	Dobrzynski J, Jakubowska Z, Dybek B.	Front Microbiol	10.3389/fmicb.2022.1069053	2022
	The combined use of a plant growth promoting Bacillus sp. strain and GABA promotes the growth of rice under salt stress by regulating antioxidant enzyme system, enhancing photosynthesis and improving soil enzyme activities.	Wang G, Zhang L, Zhang S, Li B, Li J, Wang X, Zhang J, Guan C, Ji J.	Microbiol Res	10.1016/j.micres.2022.127225	2023
Genetics	A pan-genomic assessment: Delving into the genome of the marine epiphyte Bacillus altitudinis strain 19_A and other very close Bacillus strains from multiple environments.	Comba-Gonzalez NB, Chaves-Moreno D, Santamaria-Vanegas J, Montoya-Castano D.	Heliyon	10.1016/j.heliyon.2024.e27820	2024
	Characterization of Bacillus pumilus Strains Isolated from Bovine Uteri.	Ballas P, Gabler C, Wagener K, Drillich M, Ehling-Schulz M.	Animals (Basel)	10.3390/ani13081297	2023
Pathogenicity	Potential for the Bio-Detoxification of the Mycotoxins Enniatin B and Deoxynivalenol by Lactic Acid Bacteria and Bacillus spp.	Mischler S, Andre A, Chetschik I, Miescher Schwenninger S.	Microorganisms	10.3390/microorganisms12091892	2024
	Seed coating by biofertilizer containing spores of Bacillus pumilus TUAT1 strain enhanced initial growth of Oryza sativa L.	Agake S, Artigas Ramirez MD, Kojima K, Ookawa T, Ohkama-Ohtsu N, Yokoyama T.	Agron J	10.1002/agj2.20747	2021
	Influence of organic, synthetic and biofertilizers on the diversity of cassava rhizosphere microbiome in Northeastern Thailand.	Somyong S, Mhuantong W, Phetchawang P, Thompson DK, Thepsilvisut O, Pootakham W.	PeerJ	10.7717/peerj.20085	2025
	Characterizations of Larval Gut Bacteria of Anopheles subpictus Grassi (1899) and their Role in Mosquito Development in Hooghly, West Bengal, India.	Seal M, Chatterjee S.	Appl Biochem Biotechnol	10.1007/s12010-021-03706-6	2022
	Optimization of the Extraction Process and Comprehensive Evaluation of the Antimicrobial and Antioxidant Properties of Different Polar Parts of the Ethanol Extracts of Cannabis sativa L.	Jiang H, Dong Y, Pan S, Zhou H, Cui H.	ACS Omega	10.1021/acsomega.4c10986	2025
	Effects of the putative probiotics Bacillus licheniformis, Bacillus pumilus, and Bacillus subtilis on white leg shrimp, Litopenaeus vannamei, immune response, gut histology, water quality, and growth performance.	Omar AA, Marzouk MS, Mahfouz NB, Massoud AM, Shukry M, Farrag F, Zayed MM, Alaziz MAA, Moustafa EM.	Open Vet J	10.5455/ovj.2024.v14.i1.13	2024
	Microalgal and Cyanobacterial Biomasses Modified the Activity of Extracellular Products from Bacillus pumilus: An In Vitro and In Vivo Assessment.	Garcia-Marquez J, Diaz AG, Molina-Roque L, Dominguez-Maqueda M, de Las Heras V, Simo-Mirabet P, Vizcaino AJ, Martos-Sitcha JA, Alarcon-Lopez FJ, Morinigo MA, Balebona MC.	Probiotics Antimicrob Proteins	10.1007/s12602-024-10350-z	2025
	Influence of Bacillus safensis and Bacillus pumilus on the electrochemical behavior of 2024-T3 aluminum alloy.	Vejar N, Gutierrez S, Tareelap N, Alvarado C, Solis R, Guerra C, Pineda F, Sancy M, Paez M.	Bioelectrochemistry	10.1016/j.bioelechem.2021.107950	2022
	Fabrication of silver nanocomposite of azithromycin and tulsi against in vitro Pseudomonas inhibition.	Dobhal K, Rautela J, Joshi NC, Jakhmola V.	Indian J Pharmacol	10.4103/ijp.ijp_284_23	2025
	Microbial community succession during tobacco fermentation reveals a flavor-improving mechanism.	Zhu J, Wang J, An Z, Shen C, Dong H, Wang H, Peng Z, Yang B, Liu J, Wang X, Fang Z.	Front Bioeng Biotechnol	10.3389/fbioe.2025.1627842	2025
	Alkaline-Acid Intestine Environment Controlled by A Carbonic Anhydrase Gene Influences Synthesis of Sex Pheromone by Symbionts.	Gui S, Xie L, Wang Z, Chen Y, Xiao Y, Lin Z, Chen J, Lu Y, Keller L, Cheng D.	Adv Sci (Weinh)	10.1002/advs.202511723	2025
	Degradation Mechanism of Aflatoxin M₁ by Recombinant Catalase from Bacillus pumilusE-1-1-1: Food Applications in Milk and Beer.	Liu X, Zhao F, Wang X, Peng K, Kang C, Sang Y.	Foods	10.3390/foods13060888	2024
	Solution blowing spinning of polylactate/polyvinyl alcohol/ZnO nanocomposite toward green and sustainable preparation of wound dressing nanofibrous films.	Snari RM, Bayazeed A, Ibarhiam SF, Alnoman RB, Attar R, Abumelha HM, El-Metwaly NM.	Microsc Res Tech	10.1002/jemt.24237	2022
	Comparison of automatic methods MALDI-TOF, VITEK2 and manual methods for the identification of intestinal microbial communities on the example of samples from alpacas (Vicugna pacos).	Plawinska-Czarnak J, Wodz K, Strzalkowska Z, Zychska M, Nowak T, Kwiecinski A, Kwiecinski P, Bielecki W, Rodo A, Rzewuska M, Klosinska D, Anusz K, Orlowska B.	J Vet Res	10.2478/jvetres-2023-0051	2023
	The evaluation of next-generation probiotics on broiler growth performance, gut morphology, gut microbiome, nutrient digestibility, in addition to enzyme production of Bacillus spp. in vitro.	Bromfield JI, Niknafs S, Chen X, von Hellens J, Horyanto D, Sun B, Yu L, Tran VH, Navarro M, Roura E.	Anim Nutr	10.1016/j.aninu.2024.03.013	2024
	Nematode-bacteria interactions in bovine parasitic otitis.	Caracciolo ME, Villela EV, Machado LDS, Barreto ML, Rosa ACP, Lopes-Torres EJ.	Rev Bras Parasitol Vet	10.1590/s1984-29612024081	2024
	Involvement of Peptidoglycan Receptor Proteins in Mediating the Growth-Promoting Effects of Bacillus pumilus TUAT1 in Arabidopsis thaliana.	Islam MM, Agake SI, Ito T, Habibi S, Yasuda M, Yamada T, Stacey G, Ohkama-Ohtsu N.	Plant Cell Physiol	10.1093/pcp/pcae016	2024
	Pseudomonas synxantha volatile organic compounds: efficacy against Cadophora luteo-olivacea and Botrytis cinerea of kiwifruit.	Di Francesco A, Jabeen F, Vall-Llaura N, Moret E, Martini M, Torres R, Ermacora P, Teixido N.	Front Plant Sci	10.3389/fpls.2024.1398014	2024
	The Interactive Effects of Deficit Irrigation and Bacillus pumilus Inoculation on Growth and Physiology of Tomato Plant.	Liu J, Zhang J, Shi Q, Liu X, Yang Z, Han P, Li J, Wei Z, Hu T, Liu F.	Plants (Basel)	10.3390/plants12030670	2023
	Effects of Bacillus pumilus on growth performance, immunological indicators and gut microbiota of mice.	Zhang N, Wang L, Wei Y.	J Anim Physiol Anim Nutr (Berl)	10.1111/jpn.13505	2021
	Investigating the in vitro antibacterial, antibiofilm, antioxidant, anticancer and antiviral activities of zinc oxide nanoparticles biofabricated from Cassia javanica.	Almuhayawi MS, Alruhaili MH, Soliman MKY, Tarabulsi MK, Ashy RA, Saddiq AA, Selim S, Alruwaili Y, Salem SS.	PLoS One	10.1371/journal.pone.0310927	2024
	Alkaline Thermo- and Oxidant-Stable Protease from Bacillus pumilus Strain TNP93: Laundry Detergent Formulations.	Arabaci N, Karaytug T.	Indian J Microbiol	10.1007/s12088-023-01115-3	2023
	Short-Chain Poly(gamma-diaminobutanoic acid), A Poly(amino acid) Produced by a Marine Bacteria Bacillus pumilus.	Li S, Yao Y, Hu S, Chen J.	Curr Microbiol	10.1007/s00284-021-02371-6	2021
	Bacillus pumilus improved drought tolerance in Glycyrrhiza uralensis G5 seedlings through enhancing primary and secondary metabolisms	Zhang X, Xie Z, Lang D, Chu Y, Cui G, Jia X.	Physiologia Plantarum.		2021
	Biological degradation of polyethylene terephthalate by rhizobacteria.	Dhaka V, Singh S, Ramamurthy PC, Samuel J, Swamy Sunil Kumar Naik T, Khasnabis S, Prasad R, Singh J.	Environ Sci Pollut Res Int	10.1007/s11356-022-20324-9	2023
Metabolism	Novel application of isolated Micrococcus luteus and Bacillus pumilus for Li⁺ ion biosorption: a comparative study.	Gunan Yucel H, Aksu Z, Usta T, Ertugrul Karatay S, Donmez G.	Prep Biochem Biotechnol	10.1080/10826068.2021.1872029	2021
	Molecular characterization and phylogenetic analysis of Bacillus pumilus causing trunk bulges of RRIM 3001 superclone rubber tree in Malaysia	Mazlan S, Jaafar NM, Wahab A, Sulaiman Z, Rajandas H, Zulperi D.	Eur J Plant Pathol	10.1007/s10658-021-02208-9	2021
	Characteristics of two terbutylazine-degrading bacteria and the construction of a live bacterial agent for effective degradation of terbutylazine in soil.	Zhu J, Zhao Y, Li X, Fu LI.	An Acad Bras Cienc	10.1590/0001-3765202220200658	2022
	Characterization and engineering of two new GH9 and GH48 cellulases from a Bacillus pumilus isolated from Lake Bogoria	Ogonda LA, Saumonneau A, Dion M, Muge EK, Wamalwa BM, Mulaa FJ, Tellier C.	Biotechnol Lett		2021
	Microbial ecology of sandflies-the correlation between nutrition, Phlebotomus papatasi sandfly development and microbiome.	Vaselek S, Alten B.	Front Vet Sci	10.3389/fvets.2024.1522917	2024
	Efficient Assessment and Optimisation of Medium Components Influencing Extracellular Xylanase Production by Pediococcus pentosaceus G4 Using Statistical Approaches	Ali N, Foo H, Ramli N, Halim M, Thalij K.	Int J Mol Sci		2025
	Impact of probiotic-supplemented water on the performance and physiological responses of broilers under normal and heat stress conditions	Istiteh R, Abuajamieh M, Al-Qaisi M, Abedal-Majed M, Abdelqader A.	Vet World		2025
	The use of ultraviolet light generated from light-emitting diodes for the disinfection of transvaginal ultrasound probes.	Yasir M, Willcox MDP.	PLoS One	10.1371/journal.pone.0298449	2024
	Synthesis, in vitro antimicrobial activity, and in silico studies of 1-aminoalkyl-2-naphthols.	Beyene F, Mazumder A, Tadesse S, Asres K, Bisrat D.	Sci Rep	10.1038/s41598-025-23064-1	2025
	Epoxy-Functionalized Isatin Derivative: Synthesis, Computational Evaluation, and Antibacterial Analysis.	Shukla D, Azad I, Khan MA, Husain Z, Kamal A, Sheikh SY, Alotibi I, Ahmad V, Hassan F.	Antibiotics (Basel)	10.3390/antibiotics14060595	2025
	Conjugation-Mediated Plasmid Transfer Enables Genetic Modification of Diverse Bacillus Species.	Phillips EK, Cannon JA, Zhou Y, Bonifer KS, Reynolds TB.	Microbiol Spectr	10.1128/spectrum.03700-22	2023
Phylogeny	Variations in bacterial profiles associated with semen collection timing and bull breed, analyzed using 16S rRNA sequencing and MALDI-TOF MS.	Cojkic A, Niazi A, Hansson I, Morrell JM.	Front Vet Sci	10.3389/fvets.2025.1583136	2025
	Antibacterial activity of flavonoid extracts from Enteromorpha intestinalis and Caulerpa prolifera against multidrug-resistant foodborne bacterial isolates.	Alghazeer RO, Azwai SM, Elmansori AA, Alzintani KM, Elghmasi S, Alnajjar AY, Gammoudi FT, Sidati M, Hawisa ST, Garbaj AM, Eldaghayes IM.	Open Vet J	10.5455/ovj.2024.v14.i3.3	2024
Enzymology	Characterization and engineering of two new GH9 and GH48 cellulases from a Bacillus pumilus isolated from Lake Bogoria.	Ogonda LA, Saumonneau A, Dion M, Muge EK, Wamalwa BM, Mulaa FJ, Tellier C.	Biotechnol Lett	10.1007/s10529-020-03056-z	2021
Phylogeny	Characterization of gut microbiota in Apis cerana Across different altitudes in the Peninsular India.	Hariprasath K, Dhanvarsha M, Mohankumar S, Sudha M, Saranya N, Saminathan VR, Subramanian S.	BMC Ecol Evol	10.1186/s12862-025-02349-z	2025
	Assessment of Antibiotic Resistance and Microbial Contamination in Commercial Veterinary Probiotic Products.	Guan S, Wang C, Zhang Z, Wang M, Zhao X, Zhang T.	Biology (Basel)	10.3390/biology14111612	2025
	Uncommon cervical pain due by Bacillus pumilus spondylodiscitis in an immunocompetent patient: a case report.	Fusini F, Colo G, Masse A, Girardo M.	Acta Biomed	10.23750/abm.v92is1.10189	2021
	Microbes mediated alleviation of chromium (Cr VI) stress for improved phytoextraction in fodder maize (Zea mays L.) cultivar.	Kaur H, Katyal P, Chandel S, Singh D, Kumar P, Choudhary M.	Heliyon	10.1016/j.heliyon.2024.e40361	2024
	Biocontrol of fungal phytopathogens by Bacillus pumilus.	Dobrzynski J, Jakubowska Z, Kulkova I, Kowalczyk P, Kramkowski K.	Front Microbiol	10.3389/fmicb.2023.1194606	2023
	Application of starch-degradation bacteria in cigar tobacco leaf fermentation: effects on starch degradation, microbial communities and metabolic pathways.	Yin Y, Song X, Cui Y, Zhang J, Fu K, Zhou Q, Feng Y, Huang J, Hu C, Deng Y, Su Y.	Front Microbiol	10.3389/fmicb.2025.1632731	2025
	Design of mutants of GH11 xylanase from Bacillus pumilus for enhanced stability by amino acid substitutions in the N-terminal region: an in silico analysis.	Bhat SK, Purushothaman K, Kini KR, Gopala Rao Appu Rao AR.	J Biomol Struct Dyn	10.1080/07391102.2021.1899988	2022
	Effect of Bacillus pumilus supplementation on performance, intestinal morphology, gut microflora and meat quality of broilers fed different energy concentrations	Bonos E, Giannenas I, Sidiropoulou E, Stylianaki I, Tzora A, Skoufos I, Barbe F, Demey V, Christaki E.	Anim Feed Sci Technol	10.1016/j.anifeedsci.2021.114859	2021
	Synergistic effects of Bacillus pumilus and exogenous protease on Nile tilapia (Oreochromis niloticus) growth, gut microbes, immune response and gene expression fed plant protein diet	Hassaan MS, Mohammady EY, Soaudy MR, Elashry MA, Moustafa MMA, Wassel MA, El-Garhy HAS, El-Haroun ER, Elsaied HE.	Anim Feed Sci Technol	10.1016/j.anifeedsci.2021.114892	2021
	Fungal endocarditis. A retrospective analysis from a high-volume surgical centre and review of the literature.	Fidanzati A, Scheggi V, Papi M, Stefano PL.	BMC Infect Dis	10.1186/s12879-025-11801-w	2025
	Bacillus pumilus TS1 alleviates Salmonella Enteritidis-induced intestinal injury in broilers.	Liu Y, Li Z, Li H, Wan S, Tang S.	BMC Vet Res	10.1186/s12917-023-03598-0	2023
	16S rRNA sequences of Exiguobacterium spp. bacteria dominant in a biofloc pond cultured with whiteleg shrimp, Penaeus vannamei	Manan H, Rosland NA, Mat Deris Z, Che Hashim NF, Kasan NA, Ikhwanuddin M, Suloma A, Fauzan F.	Aquac Res	10.1111/are.15731	2022
	Antibiotic resistance gene-free probiont administration to tilapia for growth performance and Streptococcus agalactiae resistance.	Mawardi M, Indrawati A, Lusiastuti AM, Wibawan IWT.	Vet World	10.14202/vetworld.2023.2504-2514	2023
	Salt-tolerant plant growth-promoting Bacillus pumilus strain JPVS11 to enhance plant growth attributes of rice and improve soil health under salinity stress.	Kumar A, Singh S, Mukherjee A, Rastogi RP, Verma JP.	Microbiol Res	10.1016/j.micres.2020.126616	2021
Enzymology	Development of nanocomposite-selenium filter for water disinfection and bioremediation of wastewater from Hg and AgNPs.	Darwesh OM, Matter IA, Abdel-Maksoud MA, Al-Qahtani WH, El-Tayeb MA, Kodous AS, Aufy M.	Sci Rep	10.1038/s41598-024-70120-3	2024
Genetics	Enhanced poly-gamma-L-diaminobutanoic acid production in Bacillus pumilus by combining genome shuffling with multiple antibiotic-resistance.	Li S, Wang L, Wang N.	J Ind Microbiol Biotechnol	10.1007/s10295-020-02315-2	2020
	Two-Component Response Regulators CitT, YvcP, and YycI Differentially Control Pectin and Hemicellulose Degradation in Degumming of Ramie Fibers by Bacillus subtilis Strain 168.	Yang Q, Ma S, Cheng L, Zhou X, Xi G, Chen C, Peng Z, Hu Y, Tan S, Duan S.	Polymers (Basel)	10.3390/polym17182473	2025
	Bacillus pumilus improved drought tolerance in Glycyrrhiza uralensis G5 seedlings through enhancing primary and secondary metabolisms.	Zhang X, Xie Z, Lang D, Chu Y, Cui G, Jia X.	Physiol Plant	10.1111/ppl.13236	2021
	Isolation and identification of endophytic bacteria from potato tissues and their effects as biological control agents against bacterial wilt	Bahmani K, Hasanzadeh N, Harighi B, Marefat A.	Physiol Mol Plant Pathol		2021
Metabolism	Isolation, characterization of galactose-specific lectin from Odoiporus longicollis and its antibacterial and anticancer activities.	Tamilarasan K, Annapoorani A, Manikandan R, Janarthanan S.	Int J Biol Macromol	10.1016/j.ijbiomac.2021.05.054	2021
Phylogeny	Drug resistance and phylogenetic grouping of bacteria isolated from visitors' hands in a secondary-care hospital.	Campista-Leon S, Cabanillas-Pacheco MJ, Delgado-Diaz LJ, Garcia-Guerrero JT, Peinado-Guevara LI.	J Infect Dev Ctries	10.3855/jidc.15252	2022
Enzymology	Thermostable and alkalistable exopolygalacturonase of Bacillus pumilus dcsr1: Characteristics and applicability.	Sharma DC, Satyanarayana T.	Int J Biol Macromol	10.1016/j.ijbiomac.2020.08.204	2020
Enzymology	Sequence analysis and docking performance of extracellular chitinase from Bacillus pumilus MCB-7, a novel mangrove isolate.	K S R, Varghese S, M S J.	Enzyme Microb Technol	10.1016/j.enzmictec.2020.109624	2020
	Effect of pH and Carbon Source on Phosphate Solubilization by Bacterial Strains in Pikovskaya Medium.	Sanchez-Gonzalez ME, Mora-Herrera ME, Wong-Villarreal A, De La Portilla-Lopez N, Sanchez-Paz L, Lugo J, Vaca-Paulin R, Del Aguila P, Yanez-Ocampo G.	Microorganisms	10.3390/microorganisms11010049	2022
Metabolism	[Efficiency of RNA Hydrolysis by Binase from Bacillus pumilus: The Impact of Substrate Structure, Metal Ions, and Low Molecular Weight Nucleotide Compounds].	Kuznetsova AA, Akhmetgalieva AA, Ulyanova VV, Ilinskaya ON, Fedorova OS, Kuznetsov NA.	Mol Biol (Mosk)	10.31857/s0026898420050067	2020
Phylogeny	Accurate noise-robust classification of Bacillus species from MALDI-TOF MS spectra using a denoising autoencoder.	Uvarova YE, Demenkov PS, Kuzmicheva IN, Venzel AS, Mischenko EL, Ivanisenko TV, Efimov VM, Bannikova SV, Vasilieva AR, Ivanisenko VA, Peltek SE.	J Integr Bioinform	10.1515/jib-2023-0017	2023
Genetics	Isolation and Characterization of Two Novel Siphoviruses Novomoskovsk and Bolokhovo, Encoding Polysaccharide Depolymerases Active against Bacillus pumilus.	Skorynina AV, Koposova ON, Kazantseva OA, Piligrimova EG, Ryabova NA, Shadrin AM.	Int J Mol Sci	10.3390/ijms232112988	2022
	The mechanisms of struvite biomineralization in municipal wastewater.	Leng Y, Soares A.	Sci Total Environ	10.1016/j.scitotenv.2021.149261	2021
	Preparation and enzymatic activity analysis of rChiA-DP derived from the Bacillus proteolyticus IMH/B-1 Strain isolated from Dermacentor nuttalli.	Liu F, Huge J, Hassan MA, Shah SQA, Liu Y, Teri G, Yila G, Sua R, Geri L.	Sci Rep	10.1038/s41598-025-17223-7	2025
	Exploring stress-tolerant plant growth-promoting rhizobacteria from groundnut rhizosphere soil in semi-arid regions of Ethiopia.	Beshah A, Muleta D, Legese G, Assefa F.	Plant Signal Behav	10.1080/15592324.2024.2365574	2024
	Coeliac disease and microbiota: is it time for personalised biotics intervention? A scoping review.	Valitutti F, Cavalli E, Leter B, Leonard M, Alessio F, Cucchiara S.	BMJ Nutr Prev Health	10.1136/bmjnph-2024-001100	2025
	Visualization of probiotics via epifluorescence microscopy and fluorescence in situ hybridization (FISH).	Pasulka AL, Howes AL, Kallet JG, VanderKelen J, Villars C.	J Microbiol Methods	10.1016/j.mimet.2021.106151	2021
	Characterization of persistent organic pollutants and culturable and non-culturable bacterial communities in pulp and paper sludge after secondary treatment.	Tripathi S, Yadav S, Purchase D, Singh K, Al-Shwaiman HA, Chandra R.	Chemosphere	10.1016/j.chemosphere.2022.133892	2022
Enzymology	Mediation of induced systemic resistance by the plant growth-promoting rhizobacteria Bacillus pumilus S2-3-2.	Li W, Lee SY, Cho YJ, Ghim SY, Jung HY.	Mol Biol Rep	10.1007/s11033-020-05883-9	2020
	Characterization of the antimicrobial activity produced by Bacillus sp. isolated from wetland sediment.	Cavalini L, Jankoski P, Correa APF, Brandelli A, Motta ASD.	An Acad Bras Cienc	10.1590/0001-3765202120201820	2021
	Bacterial and yeast microbial diversity of the ripened traditional middle east surk cheese	Esen Y, Cetin B.	Int Dairy J	10.1016/j.idairyj.2021.105004	2021
	Nutrient Removal and Recovery from Urine Using Bio-Mineral Formation Processes.	Colston RE, Nair A, Vale P, Hassard F, Stephenson T, Soares A.	ACS Sustain Resour Manag	10.1021/acssusresmgt.4c00025	2024
	Bacillus clausii Bacteremia Following Probiotic Use: A Report of Two Cases.	Corredor-Rengifo D, Tello-Cajiao ME, Garcia-Molina FA, Montero-Riascos LF, Segura-Cheng JD.	Cureus	10.7759/cureus.57853	2024
Metabolism	Bacillus pumilus LZP02 Promotes Rice Root Growth by Improving Carbohydrate Metabolism and Phenylpropanoid Biosynthesis.	Liu H, Wang Z, Xu W, Zeng J, Li L, Li S, Gao Z.	Mol Plant Microbe Interact	10.1094/mpmi-04-20-0106-r	2020
	Synthetic Microbial Community Members Interact to Metabolize Caproic Acid to Inhibit Potato Dry Rot Disease.	Shi H, Li W, Chen H, Meng Y, Wu H, Wang J, Shen S.	Int J Mol Sci	10.3390/ijms25084437	2024
	Potential anticancer effects of cyclo(-Pro-Tyr) against N-diethyl nitrosamine induced hepatocellular carcinoma in mouse through PI3K/AKT signaling.	Karanam G, Arumugam MK.	Environ Toxicol	10.1002/tox.23395	2022
	Characterization of a Protease Hyper-Productive Mutant of Bacillus pumilus by Comparative Genomic and Transcriptomic Analysis.	Liu YC, Han LL, Chen TY, Lu YB, Feng H.	Curr Microbiol	10.1007/s00284-020-02154-5	2020
	Screening for Candidate Genes Associated with Biocontrol Mechanisms of Bacillus pumilus DX01 Using Tn5 Transposon Mutagenesis and a 2-DE-Based Comparative Proteomic Analysis.	Chen Y, Liu T, Li Q, Ma Y, Cheng J, Xu L.	Curr Microbiol	10.1007/s00284-020-02191-0	2020
	Volatile Organic Compounds Produced by Cacao Endophytic Bacteria and Their Inhibitory Activity on Moniliophthora roreri.	De la Cruz-Lopez N, Cruz-Lopez L, Holguin-Melendez F, Guillen-Navarro GK, Huerta-Palacios G.	Curr Microbiol	10.1007/s00284-021-02696-2	2022
	Photosynthetic activity and growth of poblano pepper biofertilized with plant growth promoting rhizobacteria and arbuscular mycorrhizal fungi.	Gonzalez-Mancilla A, Almaraz-Suarez JJ, Ferrera-Cerrato R, Rodriguez-Guzman MDP, Taboada-Gaytan OR.	Curr Res Microb Sci	10.1016/j.crmicr.2024.100269	2024
	Replacement of Trypsin by Proteases for Medical Applications.	Matinfar A, Dezfulian M, Haghighipour N, Kurdtabar M, Pourbabaei AA.	Iran J Pharm Res	10.5812/ijpr-126328	2022
	Increasing the level of 4-vinylguaiacol in top-fermented wheat beer by secretory expression of ferulic acid decarboxylase from Bacillus pumilus in brewer's yeast.	Xu L, Zhang H, Cui Y, Zeng D, Bao X.	Biotechnol Lett	10.1007/s10529-020-02980-4	2020
Enzymology	Sustainable production, biochemical and molecular characterization of thermo-and-solvent stable alkaline serine keratinase from novel Bacillus pumilus AR57 for promising poultry solid waste management.	Jagadeesan Y, Meenakshisundaram S, Saravanan V, Balaiah A.	Int J Biol Macromol	10.1016/j.ijbiomac.2020.06.219	2020
	Evaluation of three Bacillus spp. isolated from the gut of giant freshwater prawn as potential probiotics against pathogens causing Vibriosis and Aeromonosis.	Sam-On MFS, Mustafa S, Yusof MT, Mohd Hashim A, Abbasiliasi S, Zulkifly S, Jahari MA, Roslan MAH.	Microb Pathog	10.1016/j.micpath.2022.105417	2022
	Bacteriocin producing microbes with bactericidal activity against multidrug resistant pathogens.	V A L, Mohammed Alarjani K, Malaisamy A, Balasubramanian B.	J Infect Public Health	10.1016/j.jiph.2021.09.029	2021
	Rhizosphere-Associated Bacteria of Saltgrass [Distichlis spicata (L.) Greene] Show Enhanced Ability to Tolerate Saline Environments and Stimulate Plant Growth.	Mena-Garcia A, Alarcon A, Gomez-Merino FC, Peralta-Sanchez MG, Trejo-Tellez LI.	Microorganisms	10.3390/microorganisms13092046	2025
Metabolism	Biochemical tests to determine the biodegradability potential of bacterial strains in PAH polluted sites.	Naeim AH, Baharlouei J, Ataabadi M.	World J Microbiol Biotechnol	10.1007/s11274-020-02950-y	2020
	Effects of oral administration of native lactic acid bacteria with probiotic potential on productive parameters and meat quality of fattening guinea pigs (Cavia porcellus)	Goicochea-Vargas J, Salvatierra-Alor M, Acosta-Pachorro F, Rondon-Jorge W, Cajacuri-Aquino J, Herrera-Briceno A, Morales-Parra E, Mialhe E, Silva M, Ratto M.	Open Vet J		2025
	Characterization of Mercury-Resistant Rhizobacteria for Plant Growth Promotion: An In Vitro and In Silico Approach.	Amin A, Naveed M, Munawar U, Sarwar A, Latif Z.	Curr Microbiol	10.1007/s00284-021-02660-0	2021
	A case study on the correlation between radon and multiple geophysicochemical properties of soils in G island, Korea, and effects on the bacterial metabolic behaviors.	Park SY, San Choi Y, Park SY, Kim CG.	J Environ Radioact	10.1016/j.jenvrad.2020.106336	2020
	High-level expression of a beta-mannanase (manB) in Pichia pastoris GS115 for mannose production with Penicillium brevicompactum fermentation pretreatment of soybean meal.	Chen M, Wang J, Lin L, Wei W, Shen Y, Wei D.	Bioprocess Biosyst Eng	10.1007/s00449-020-02467-6	2021
	Whey Protein Enzymatic Breakdown: Synthesis, Analysis, and Discovery of New Biologically Active Peptides in Papain-Derived Hydrolysates.	Czelej M, Garbacz K, Czernecki T, Rachwal K, Wawrzykowski J, Wasko A.	Molecules	10.3390/molecules30071451	2025
Pathogenicity	Bacillus pumilus ribonuclease rescues mice infected by double-stranded RNA-containing reovirus serotype 1.	Shah Mahmud R, Efimova MA, Ulyanova V, Ravilov RK, Shuralev EA, Kolpakov A, Ilinskaya O.	Virus Res	10.1016/j.virusres.2020.198086	2020
	Understanding the mechanisms of biological struvite biomineralisation.	Leng Y, Soares A.	Chemosphere	10.1016/j.chemosphere.2021.130986	2021
	iTRAQ-based proteomics analysis of Bacillus pumilus responses to acid stress and quorum sensing in a vitamin C fermentation system.	Zhang Q, Lyu S.	Front Microbiol	10.3389/fmicb.2023.1131000	2023
	Diversity and functional characteristics of culturable bacterial endosymbionts from cassava whitefly biotype Asia II-5, Bemisia tabaci.	Kumar V, Subramanian J, Marimuthu M, Subbarayalu M, Ramasamy V, Gandhi K, Ariyan M.	3 Biotech	10.1007/s13205-024-03949-0	2024
	Microbial community analysis of viable cells and genomes in kyejang, a traditional Korean fermented beverage	Jung JK, Hong SP, Lee MK.	Lebensm Wiss Technol	10.1016/j.lwt.2021.110956	2021
	Effects of Different Culture Conditions on the Biofilm Formation of Bacillus pumilus HR10.	Zhu ML, Wang YH, Dai Y, Wu XQ, Ye JR.	Curr Microbiol	10.1007/s00284-020-01944-1	2020
	Colonization by the Mycorrhizal Helper Bacillus pumilus HR10 Is Enhanced During the Establishment of Ectomycorrhizal Symbiosis Between Hymenochaete sp. Rl and Pinus thunbergii.	Wang YH, Kong WL, Zhu ML, Dai Y, Wu XQ.	Front Microbiol	10.3389/fmicb.2022.818912	2022
	Short-term effects of biochar and Bacillus pumilus TUAT-1 on the growth of forage rice and its associated soil microbial community and soil properties	Win KT, Okazaki K, Ohkama-Ohtsu N, Yokoyama T, Ohwaki Y.	Biol Fertil Soils	10.1007/s00374-020-01448-x	2020
	Plant growth promotion and enhanced uptake of Cd by combinatorial application of Bacillus pumilus and EDTA on Zea mays L.	Hayat K, Menhas S, Bundschuh J, Zhou P, Niazi NK, Amna, Hussain A, Hayat S, Ali H, Wang J, Khan AA, Ali A, Munis FH, Chaudhary HJ.	Int J Phytoremediation	10.1080/15226514.2020.1780410	2020
	Titanium Oxide and Zinc Oxide Nanoparticles in Combination with Cadmium Tolerant Bacillus pumilus Ameliorates the Cadmium Toxicity in Maize.	Shafiq T, Yasmin H, Shah ZA, Nosheen A, Ahmad P, Kaushik P, Ahmad A.	Antioxidants (Basel)	10.3390/antiox11112156	2022
	Two Main Cancer Biomarkers as Molecular Targets of Binase Antitumor Activity.	Dudkina E, Ulyanova V, Asmandiyarova V, Vershinina V, Ilinskaya O.	Biomed Res Int	10.1155/2024/8159893	2024
	The Antibacterial Activity and Mechanisms of a Mixed Bio-Preservative on the Bacillus Stains in Crab Roe Sauce.	Yu R, Sun R, Jiang N, Zhang B, Wang C, Liu Q, Li Z, Wang X.	Foods	10.3390/foods14030525	2025
	Perspective on utilization of Bacillus species as plant probiotics for different crops in adverse conditions.	Singh S, Shyu DJH.	AIMS Microbiol	10.3934/microbiol.2024011	2024
	Harnessing Molecular Recognition for Small-Molecule-Mediated Reversible Photochemical Control Over mRNA Translation.	Parmar S, Tenney L, Liang X, Routzahn JT, Sibley CD, Schneekloth JS.	Angew Chem Int Ed Engl	10.1002/anie.202503078	2025
	Effectiveness of Endophytic and Rhizospheric Bacteria from Moringa spp. in Controlling Pythium aphanidermatum Damping-Off of Cabbage.	Al-Rahbi BAA, Al-Sadi AM, Al-Harrasi MMA, Al-Sabahi JN, Al-Mahmooli IH, Blackburn D, Velazhahan R.	Plants (Basel)	10.3390/plants12030668	2023
	Confocal Absorbance-Activated Droplet Sorting (cAADS) for Enzyme Engineering.	Kaba AM, Gounel S, Beneyton T, Buisson L, Baret JC, Mano N.	Adv Sci (Weinh)	10.1002/advs.202505324	2025
	Honeydew Honey as a Reservoir of Bacteria with Antibacterial and Probiotic Properties.	Grabek-Lejko D, Worek M.	Antibiotics (Basel)	10.3390/antibiotics13090855	2024
	Biocontrol potential of Bacillus pumilus HR10 against Sphaeropsis shoot blight disease of pine	Dai Y, Wu XQ, Wang YH, Zhu ML.	Biol Control		2020
	Combating the Dust Devil: Utilizing Naturally Occurring Soil Microbes in Arizona to Inhibit the Growth of Coccidioides spp., the Causative Agent of Valley Fever.	Kollath DR, Morales MM, Itogawa AN, Mullaney D, Lee NR, Barker BM.	J Fungi (Basel)	10.3390/jof9030345	2023
	Glycine betaine modulates extracellular polymeric substances to enhance microbial salinity tolerance.	Xia Y, Jiang X, Guo S, Wang Y, Mu Y, Shen J.	Environ Sci Ecotechnol	10.1016/j.ese.2024.100406	2024
	Determination of carbonic anhydrase enzyme activity in halophilic/halotolerant bacteria	Orhan F, Akincioglu H.	Appl Soil Ecol	10.1016/j.apsoil.2020.103650	2020
	Effect of dietary inclusion of indigenous probiotics on the growth and intestinal histomorphology of guinea pigs (Cavia porcellus).	Goicochea-Vargas J, Salvatierra-Alor M, Acosta-Pachorro F, Rondon-Jorge W, Caro-Magni C, Cajacuri-Aquino J, Morales-Parra E, Mialhe E, Silva M, Ratto M.	Open Vet J	10.5455/ovj.2025.v15.i7.8	2025
	Purification of flavonoids from Carex meyeriana Kunth based on AHP and RSM: Composition analysis, antioxidant, and antimicrobial activity	Cheng X, Cheng Y, Zhang N, Zhao S, Cui H, Zhou H.	Industrial crops and products.		2020
	Prospects of crude enzymes in replacing pure enzymes for dissolving pulp production.	Kaur P, Sharma J, Bhardwaj NK, Bhardwaj S, Kaur D, Singh A, Kumar A.	3 Biotech	10.1007/s13205-024-04080-w	2024
	Surface-associated residues in subtilisins contribute to poly-L-lactic acid depolymerization via enzyme adsorption.	Cannon JA, Zhou Y, Qualey LT, Reynolds TB.	Microb Biotechnol	10.1111/1751-7915.14473	2024
Enzymology	[Bacillus pumilus Ribonuclease Inhibits Migration of Human Duodenum Adenocarcinoma HuTu 80 Cells].	Zelenikhin PV, Ead Mohamed IS, Nadyrova AI, Sirotkina AA, Ulyanova VV, Mironova NL, Mitkevich VA, Makarov AA, Zenkova MA, Ilinskaya ON.	Mol Biol (Mosk)	10.31857/s0026898420010176	2020
	Comprehensive physiological, transcriptomic, and metabolomic analyses reveal the synergistic mechanism of Bacillus pumilus G5 combined with silicon alleviate oxidative stress in drought-stressed Glycyrrhiza uralensis Fisch.	Ma X, Xu Z, Lang D, Zhou L, Zhang W, Zhang X.	Front Plant Sci	10.3389/fpls.2022.1033915	2022
Metabolism	RNA sequencing reveals small RNAs in Bacillus pumilus under different growth phases of the protease fermentation process.	Xu Y, Zhao X, He T, Huang Y, Li X, Qin J, Song T, Wang H.	Appl Microbiol Biotechnol	10.1007/s00253-019-10276-5	2020
	Chemical composition and bioactivities of essential oils from different plant parts of Ferula pseudalliacea Rech.f. as an endemic plant from Iran.	Dastan D, Hamah-Ameen BA, Salehi P, Ghaderi H, Miran M.	Nat Prod Res	10.1080/14786419.2020.1860974	2022
	Beneficial effects of a host gut-derived probiotic, Bacillus pumilus, on the growth, non-specific immune response and disease resistance of juvenile golden pompano, Trachinotus ovatus	Liu S, Wang S, Cai Y, Li E, Ren Z, Wu Y, Guo W, Sun Y, Zhou Y.	Aquaculture	10.1016/j.aquaculture.2019.734446	2020
	Genome-scale cis-acting catabolite-responsive element editing confers Bacillus pumilus LG3145 plant-beneficial functions.	Bi M, Li M, Wei J, Meng Z, Wang Z, Ying M, Yang X, Huang L.	iScience	10.1016/j.isci.2024.108983	2024
	A UV-LED module that is highly effective at inactivating human coronaviruses and HIV-1.	Persaud AT, Burnie J, Thaya L, DSouza L, Martin S, Guzzo C.	Virol J	10.1186/s12985-022-01754-w	2022
	Characterization of Bacillus pumilus Strains with Targeted Gene Editing for Antimicrobial Peptides and Sporulation Factor.	Danilova IV, Vasileva IA, Gilmutdinova AI, Dyadkina IV, Khusnullina LK, Khasanov DI, Rudakova NL, Sharipova MR.	Microorganisms	10.3390/microorganisms11061508	2023
	Antioxidant, Antimicrobial, Phytochemical and FTIR Analysis of Peganum harmala (Fruit) Ethanolic Extract From Cholistan Desert, Pakistan.	Shaheen G, Ashfaq A, Shamim T, Asif HM, Ali A, Rehman SU, Sumreen L.	Dose Response	10.1177/15593258221126832	2022
	Metagenomic insight into the biodegradation of biomass and alkaloids in the aging process of cigar.	Xue F, Yang J, Luo C, Li D, Shi G, Song G, Li Y.	Bioresour Bioprocess	10.1186/s40643-023-00667-y	2023
	Deconstruction of a multi-strain Bacillus-based probiotic used for poultry: an in vitro assessment of its individual components against C. perfringens.	Buiatte V, Schultheis M, Lorenzoni AG.	BMC Res Notes	10.1186/s13104-023-06384-1	2023
Pathogenicity	Sequestration of zearalenone using microorganisms blend in vitro.	Nathan VB, Lu H, Horn NL, Drolia R, Bhunia AK.	Lett Appl Microbiol	10.1093/lambio/ovad020	2023
	Discovery of a Novel Bacillus sp. JO01 for the Degradation of Poly(butylene adipate-co-terephthalate)( PBAT) and Its Inhibition by PBAT Monomers.	Oh J, Shin N, Kim S, Lee Y, Shin Y, Choi S, Joo JC, Jeon JM, Yoon JJ, Bhatia SK, Yang YH.	J Microbiol Biotechnol	10.4014/jmb.2408.08051	2024
	Biosynthesis of Silver Nanoparticles and Exploring Their Potential of Reducing the Contamination of the In Vitro Culture Media and Inducing the Callus Growth of Rumex nervosus Explants.	Alfarraj NS, Tarroum M, Al-Qurainy F, Nadeem M, Khan S, Salih AM, Shaikhaldein HO, Al-Hashimi A, Alansi S, Perveen K.	Molecules	10.3390/molecules28093666	2023
	Bacillus pumilus and Stenotrophomonas maltophilia as two potentially causative agents involved in Persian oak decline in Zagros forests (Iran)	Ahmadi E, Kowsari M, Azadfar D, Salehi Jouzani G.	For Pathol		2019
Pathogenicity	Network pharmacological prediction of chemical constituents and endophyte metabolites of medicinal plant Shengli grass.	Zhao L, Huang X, Xu Y, Xi L, Song W, Xing X, Liu M, Li M, Hou Y.	Sci Rep	10.1038/s41598-025-20961-3	2025
	Optical characterization and tunable antibacterial properties of gold nanoparticles with common proteins.	Simon J, Udayan S, Bindiya ES, Bhat SG, Nampoori VPN, Kailasnath M.	Anal Biochem	10.1016/j.ab.2020.113975	2021
Biotechnology	Optimization of Chemical Defined Medium for Lactobacillus brevis Based on Artificial Intelligence.	Yu C, Yang X, Ren X, Xia J.	Eng Life Sci	10.1002/elsc.70051	2025
	Microbiome Structures and Beneficial Bacteria in Soybean Roots Under Field Conditions of Prolonged High Temperatures and Drought Stress.	Gouli S, Majeed A, Liu J, Moseley D, Mukhtar MS, Ham JH.	Microorganisms	10.3390/microorganisms12122630	2024
	Endophytic bacteria from Ethiopian coffee plants and their potential to antagonise Meloidogyne incognita	Mekete T, Hallmann J, Kiewnick S, Sikora R.	Nematology		2020
Pathogenicity	Isolation and identification of new antibacterial compounds from Bacillus pumilus.	Chu J, Wang Y, Zhao B, Zhang XM, Liu K, Mao L, Kalamiyets E.	Appl Microbiol Biotechnol	10.1007/s00253-019-10083-y	2019
	In Vitro and In Vivo Antitumor Activity of a Chloroform Partition from Ibervillea sonorae (S. Watson) Greene Endophytic Bacillus subtilis Extracts.	Romero-Arguelles R, Romo-Saenz CI, Tamez-Guerra P, Fonseca-Rivera D, Elizondo-Luevano JH, Rodriguez-Garza NE, Perez-Gonzalez O, Quinones-Flores CM, Arzate-Quintana C, Hernandez LPL, Gomez-Flores R.	Plants (Basel)	10.3390/plants14101474	2025
	Entomopathogenic Nematode Compatibility with Vineyard Fungicides.	Campos-Herrera R, Carpentero E, Puelles M, Ramos Saez de Ojer JL, Blanco Perez R.	J Nematol	10.2478/jofnem-2023-0057	2023
Pathogenicity	Bacillus pumilus induced tolerance of Maize (Zea mays L.) against Cadmium (Cd) stress.	Shahzad A, Qin M, Elahie M, Naeem M, Bashir T, Yasmin H, Younas M, Areeb A, Irfan M, Billah M, Shakoor A, Zulfiqar S.	Sci Rep	10.1038/s41598-021-96786-7	2021
Phylogeny	Production of antibacterial compounds using Bacillus spp. isolated from thermal springs in Saudi Arabia.	Alqahtani O, Stapleton P, Gibbons S.	Saudi Pharm J	10.1016/j.jsps.2023.05.015	2023
	Fourier transform infrared spectrometer analysis and antimicrobial screening of ethanolic extract of Operculina terpathum from cholistan desert.	Shaheen G, Ashfaq A, Khawar A, Jamil QA, Parveen R, Hadi F, Ghauri AO, Shirazi JH, Asif HM, Shamim T, Sumreen L, Ali T, Akram M, Noor R, Mehmood A, Sajid F.	Pharm Pract (Granada)	10.18549/pharmpract.2022.2.2647	2022
	Growth-Promoting Effects of Ten Soil Bacterial Strains on Maize, Tomato, Cucumber, and Pepper Under Greenhouse Conditions.	Andelkovic J, Mihajilov Krstev T, Dimkic I, Unkovic N, Stankovic D, Jokovic N.	Plants (Basel)	10.3390/plants14121874	2025
	Isolation of Bacillus subtilis and Bacillus pumilus with Anti-Vibrio parahaemolyticus Activity and Identification of the Anti-Vibrio parahaemolyticus Substance.	Jiang N, Hong B, Luo K, Li Y, Fu H, Wang J.	Microorganisms	10.3390/microorganisms11071667	2023
Enzymology	Genome Sequencing and Analysis of Bacillus pumilus ICVB403 Isolated from Acartia tonsa Copepod Eggs Revealed Surfactin and Bacteriocin Production: Insights on Anti-Staphylococcus Activity.	Zidour M, Belguesmia Y, Cudennec B, Grard T, Flahaut C, Souissi S, Drider D.	Probiotics Antimicrob Proteins	10.1007/s12602-018-9461-4	2019
	Engineering the Bacterial Laccase CotA for Functional Expression and Dye Decolorization Through Site-Directed Mutagenesis.	Zhou Z, Yao S, Ying S, Yu M, Song Z, Sun Y, Qian L, Zhang Y.	Biology (Basel)	10.3390/biology14101335	2025
	Pseudo-outbreak of Bacillaceae species associated with poor compliance with blood culture collection recommendations.	Borcan AM, Vasile CC, Popa AI, Badea CA, Popescu GA, Talapan D.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-024-04925-5	2024
	Molecular Characterization of Culturable Yeasts and Nonspore-Forming Bacteria Associated With Fermented Kapok Seeds (Kantong), a Traditional Food Condiment in Ghana.	Ametefe EN, Thorsen L, Danwonno H, Agoha RK, Glover RLK, Dzogbefia VP, Jespersen L.	Int J Food Sci	10.1155/ijfo/6452183	2025
	Antibacterial activity of soil-isolated Bacillus altitudinis/pumilus complex against methicillin-resistant Staphylococcus aureus from Mwanza, Tanzania.	Abednego RN, Silago V.	Afr J Lab Med	10.4102/ajlm.v12i1.2167	2023
	Growth stimulation and alleviation of salinity stress to wheat by the biofilm forming Bacillus pumilus strain FAB10	Ansari FA, Ahmad I, Pichtel J.	Appl Soil Ecol	10.1016/j.apsoil.2019.05.023	2019
	Effective Biotransformation of Variety of Guaiacyl Lignin Monomers Into Vanillin by Bacillus pumilus.	Zuo K, Li H, Chen J, Ran Q, Huang M, Cui X, He L, Liu J, Jiang Z.	Front Microbiol	10.3389/fmicb.2022.901690	2022
Enzymology	Fast flow rate processes for purification of alkaline xylanase isoforms from Bacillus pumilus AJK and their biochemical characterization for industrial application purposes.	Singh A, Sharma D, Varghese LM, Mahajan R.	Biotechnol Prog	10.1002/btpr.2898	2020
	Quorum Sensing Inhibition by Sponge-Associated Bacillus Species: Suppressing Pseudomonas aeruginosa Virulence Factors.	Jacobs CS, Naicker R, Chenia HY.	Antibiotics (Basel)	10.3390/antibiotics14101035	2025
	Potential Plant Growth-Promoting Bacteria with Heavy Metal Resistance.	Efe D.	Curr Microbiol	10.1007/s00284-020-02208-8	2020
	Mass spectrometry-based identification of bacteria isolated from industrially contaminated site in Salamanca (Mexico) and evaluation of their potential for DDT degradation.	Garcia Lara B, Wrobel K, Corrales Escobosa AR, Serrano Torres O, Enciso Donis I, Wrobel K.	Folia Microbiol (Praha)	10.1007/s12223-020-00848-8	2021
	Plant, pathogen and biocontrol agent interaction effects on bioactive compounds and antioxidant activity in garlic	Cavalcanti VP, Aazza S, Bertolucci SKV, Pereira MMA, Cavalcanti PP, Buttros VHT, e Silva AMdO, Pasqual M, Doria J.	Physiol Mol Plant Pathol	10.1016/j.pmpp.2020.101550	2020
	Tripartite microbial augmentation of Bradyrhizobium diazoefficiens, Bacillus sp. MN54, and Piriformospora indica on growth, yield, and nutrient profiling of soybean (Glycine max L.).	Rafique M, Naveed M, Mumtaz MZ, Niaz A, Alamri S, Rehman SU, Siddiqui MH, Mustafa A.	Front Microbiol	10.3389/fmicb.2024.1437489	2024
Genetics	Genomic Characterization of Bacillus safensis Isolated from Mine Tailings in Peru and Evaluation of Its Cyanide-Degrading Enzyme CynD.	Justo Arevalo S, Zapata Sifuentes D, Cuba Portocarrero A, Brescia Reategui M, Monge Pimentel C, Farage Martins L, Marques Pierry P, Morais Piroupo C, Guerra Santa Cruz A, Quinones Aguilar M, Shaker Farah C, Setubal JC, da Silva AM.	Appl Environ Microbiol	10.1128/aem.00916-22	2022
	Characterising the Human Milk Microbiota of Indian Mothers: Prospects for Probiotic Discoveries and Antimicrobial Peptides.	Anil H, Nimbalkar SM, Joshi C, Kunjadiya A, Patel A, Pujara R, Raval K, Shekh S, Dalwadi P, Patel DV.	Int J Pediatr	10.1155/ijpe/4819511	2025
Phylogeny	Isolation and functional analysis of acid-producing bacteria from bovine rumen.	Yu J, Li C, Li X, Liu K, Liu Z, Ni W, Zhou P, Wang L, Hu S.	PeerJ	10.7717/peerj.16294	2023
	Bacilysin within the Bacillus subtilis group: gene prevalence versus antagonistic activity against Gram-negative foodborne pathogens.	Nannan C, Vu HQ, Gillis A, Caulier S, Nguyen TTT, Mahillon J.	J Biotechnol	10.1016/j.jbiotec.2020.12.017	2021
	Antifungal potential against Sclerotinia sclerotiorum (Lib.) de Bary and plant growth promoting abilities of Bacillus isolates from canola (Brassica napus L.) roots.	Ribeiro IDA, Bach E, da Silva Moreira F, Muller AR, Rangel CP, Wilhelm CM, Barth AL, Passaglia LMP.	Microbiol Res	10.1016/j.micres.2021.126754	2021
	Isolation and characterization of halotolerant plant growth promoting rhizobacteria from mangrove region of Sundarbans, India for enhanced crop productivity.	Pallavi, Mishra RK, Sahu PK, Mishra V, Jamal H, Varma A, Tripathi S.	Front Plant Sci	10.3389/fpls.2023.1122347	2023
Metabolism	Biochemical characterization of a novel GH43 family beta-xylosidase from Bacillus pumilus.	Liu Y, Huang L, Zheng D, Xu Z, Li Y, Shao S, Zhang Y, Ge X, Lu F.	Food Chem	10.1016/j.foodchem.2019.05.163	2019
Enzymology	Immobilization of E. coli expressing Bacillus pumilus CynD in three organic polymer matrices.	Carmona-Orozco ML, Panay AJ.	Appl Microbiol Biotechnol	10.1007/s00253-019-09859-z	2019
	Exploring the gut microbiota of healthy captive Asian elephants from various locations in Yunnan, China.	Wang Y, Wang Y, Zhou J, Bao M, Shah T, Yang S, Zheng J, Li Q, Hou Y, Wang B, Yuan R.	Front Microbiol	10.3389/fmicb.2024.1403930	2024
	Endobacteria Have a Negative Effect on the Virulence of Metarhizium.	Mora-Acebedo AG, Aguilar IR, Martinez-Vazquez A, Pina-Torres IH, Castellanos AD, Nieves-Lopez ZF, Contreras-Garduno J, Gonzalez-Hernandez GA, Padilla-Guerrero IE, Torres-Guzman JC.	J Fungi (Basel)	10.3390/jof11110813	2025
Enzymology	Partial characterization of Bacillus pumilus catalase partitioned in poly(ethylene glycol)/sodium sulfate aqueous two-phase systems.	Yuzugullu Karakus Y, Isik S.	Prep Biochem Biotechnol	10.1080/10826068.2019.1573197	2019
Metabolism	Insights into non-symbiotic plant growth promotion bacteria associated with nodules of Sphaerophysa salsula growing in northwestern China.	Deng ZS, Kong ZY, Zhang BC, Zhao LF.	Arch Microbiol	10.1007/s00203-019-01752-7	2020
Genetics	Bacillus sp. SW14 isolated from arid mangroves sediments enhances tomato plant growth: insights from genome analysis and greenhouse evaluation.	Sadaiappan B, Ali Q, Afridi M, Khan MA, Mundra S.	Front Plant Sci	10.3389/fpls.2025.1673790	2025
	Porcine proliferative enteropathy: overview of disease dynamics and non-antibiotic alternatives for prevention and control strategies.	Gomez-Osorio LM, Penagos-Tabares F, Bosnjak-Neumuller J, Guedes RMC, Vasiljevic M, Steiner T, McOrist S.	Front Vet Sci	10.3389/fvets.2025.1596316	2025
	Effect of Simmering Technology on Components and Activity of Myristica fragrans Houtt.	Sun J, Zhao F, Wang Z, Zhang W, Yang X, Zhou H, Wan P.	Molecules	10.3390/molecules28227627	2023
	Urogenital microbiome, intracellular bacterial communities, and their contribution to urinary tract infections.	Robino L, Navarro N, Canales-Huerta N, Gonzalez MJ, Cruz E, Sauto R, Morales C, Neffa F, Zeballos J, Jessen GL, Zunino P, Scavone P.	Microbiol Spectr	10.1128/spectrum.01247-25	2025
	Effects of dietary Bacillus pumilus on growth performance, innate immunity and digestive enzymes of giant freshwater prawns (Macrobrachium rosenbergii)	Zhao C, Zhu J, Hu J, Dong X, Sun L, Zhang X, Miao S.	Aquaculture nutrition.		2019
Metabolism	Reactive oxygen species generation and mitochondrial dysfunction for the initiation of apoptotic cell death in human hepatocellular carcinoma HepG2 cells by a cyclic dipeptide Cyclo(-Pro-Tyr).	Karanam G, Arumugam MK.	Mol Biol Rep	10.1007/s11033-020-05407-5	2020
	Ozenoxacin 1% in Pediatric and Adult Patients with Impetigo: A Meta-Analysis of Randomized Trials.	Tuesta BL, Arones-Santayana CA, Saenz GAV, Alberca-Naira Y, Torres HIC, Castellanos AB, Quintanilla DBM, Yangali-Vicente J, Barboza JJ.	J Clin Med	10.3390/jcm14072157	2025
	Innovative use of indigenous dadih probiotics to enhance feed intake, digestibility, growth performance, and health in heat-stressed Sapera goats.	Ginting N, Mirwandhono E, Ketaren NB, Lin YY.	Vet World	10.14202/vetworld.2025.1224-1233	2025
	Competing microorganisms with exclusion effects against multidrug-resistant Salmonella Infantis in chicken litter supplemented with growth-promoting antimicrobials.	Barrero MAO, Varon-Lopez M, Penuela-Sierra LM.	Vet World	10.14202/vetworld.2025.1127-1136	2025
	Combined effects of rhizo-competitive rhizosphere and non-rhizosphere Bacillus in plant growth promotion and yield improvement of Eleusine coracana (Ragi).	Dheeman S, Baliyan N, Dubey RC, Maheshwari DK, Kumar S, Chen L.	Can J Microbiol	10.1139/cjm-2019-0103	2020
	Use of digital images to count colonies of biodiesel deteriogenic microorganisms.	Correa C, Konzen PHA, Carvalho AR, Giovanella P, Bento FM, Ferrao MF.	J Microbiol Methods	10.1016/j.mimet.2020.106063	2020
Enzymology	Characterization of a thermostable protease from Bacillus subtilis BSP strain.	Majeed T, Lee CC, Orts WJ, Tabassum R, Shah TA, Jardan YAB, Dawoud TM, Bourhia M.	BMC Biotechnol	10.1186/s12896-024-00870-5	2024
	MFAP9: Characterization of an extracellular thermostable antibacterial peptide from marine fungus with biofilm eradication potential.	Kollakalnaduvil Raghavan RM, Ali Pannippara M, Kesav S, Mathew A, G Bhat S, Hatha Aa M, Kk E.	J Pharm Biomed Anal	10.1016/j.jpba.2020.113808	2021
	Euphorbia royleana Boiss Derived Silver Nanoparticles and Their Applications as a Nanotherapeutic Agent to Control Microbial and Oxidative Stress-Originated Diseases.	Ullah R, Jan SA, Khan MN, Nazish M, Kamal A, Kaplan A, Yehia HM, Alarjani KM, Alkasir R, Zaman W.	Pharmaceuticals (Basel)	10.3390/ph16101413	2023
	A pollution reducing enzymatic deinking approach for recycling of mixed office waste paper.	Singh A, Varghese LM, Yadav RD, Mahajan R.	Environ Sci Pollut Res Int	10.1007/s11356-020-10440-9	2020
	Characterization of antimicrobial effect of organotin-based catalysts on diesel-biodiesel deteriogenic microorganisms.	Ribas R, Cazarolli JC, da Silva EC, Meneghetti MR, Meneghetti SMP, Bento FM.	Environ Monit Assess	10.1007/s10661-020-08744-x	2020
	The Structure of Bilirubin Oxidase from Bacillus pumilus Reveals a Unique Disulfide Bond for Site-Specific Direct Electron Transfer.	Gihaz S, Herzallh NS, Cohen Y, Bachar O, Fishman A, Yehezkeli O.	Biosensors (Basel)	10.3390/bios12050258	2022
	Synergistic interactions of nanoparticles and plant growth promoting rhizobacteria enhancing soil-plant systems: a multigenerational perspective.	Verma KK, Joshi A, Song XP, Singh S, Kumari A, Arora J, Singh SK, Solanki MK, Seth CS, Li YR.	Front Plant Sci	10.3389/fpls.2024.1376214	2024
	Relationship of Biochemical and Sonographic Markers with Disease Severity in Rosacea Patients Without Cardiovascular Disease.	Ismail Mendi B, Mendi BAR, Farabi B, Atak MF.	Life (Basel)	10.3390/life15010046	2025
Metabolism	A Bacillus pumilus originated beta-N-acetylglucosaminidase for chitin combinatory hydrolysis and exploration of its thermostable mechanism.	Du C, Jiang S, Jiang S, Zhou Y, Zhang G.	Int J Biol Macromol	10.1016/j.ijbiomac.2019.04.054	2019
	Antagonistic potential and analytical profiling of plant probiotic bacteria using chromatography and mass spectrometry techniques against Botrytis cinerea and Fusarium oxysporum.	Hiranmayee G, Mallick SP, Reddy GS.	Bioresour Bioprocess	10.1186/s40643-025-00853-0	2025
	Antimicrobial evaluation and docking study of some new substituted benzimidazole-2yl derivatives.	Abdel-Motaal M, Almohawes K, Tantawy MA.	Bioorg Chem	10.1016/j.bioorg.2020.103972	2020
	Structural basis for antibiotic resistance by chloramphenicol acetyltransferase type A in Staphylococcus aureus.	Wang K, Chen J, Li W, Wang M, Fan T, Bu D, Ye S.	Sci Rep	10.1038/s41598-025-18365-4	2025
	Four Decades of Bacillus Biofertilizers: Advances and Future Prospects in Agriculture.	Wu X, Liu Y, Jia B, Tao L, Li H, Wang J, Yuan Z, Sun X, Yao Y.	Microorganisms	10.3390/microorganisms13010187	2025
	Short communication: Effects of a commercial triple-strain Bacillus-based probiotic on cecal colonization with Salmonella Enteritidis in commercial layer pullets.	Sobotik EB, Russo K, Lerner SP, Sandvang D, Meuter A, McBride H, Sayed R, Girgis G.	Vet Anim Sci	10.1016/j.vas.2024.100362	2024
Pathogenicity	Impact of a probiotic-based cleaning product on the microbiological profile of broiler litters and chicken caeca microbiota.	De Cesare A, Caselli E, Lucchi A, Sala C, Parisi A, Manfreda G, Mazzacane S.	Poult Sci	10.3382/ps/pez148	2019
	Tuning transcription factor DegU for developing extracellular protease overproducer in Bacillus pumilus.	Xie CY, Li WJ, Feng H.	Microb Cell Fact	10.1186/s12934-023-02177-0	2023
	Efficacy of a novel bacteriocin isolated from Lysinibacillus sp. against Bacillus pumilus	Ahmad V, Ahmad K, Baig MH, AL-Shwaiman HA, Al Khulaifi MM, Elgorban AM, Khan MS.	Lebensm Wiss Technol	10.1016/j.lwt.2018.12.021	2019
	Biodeterioration of canvas paintings: microbial role and development of sustainable treatments for biocontrol	Climaco G, Oliva G, Fiore P, Tedesco C, Castiglione S, Vigliotta G.	Appl Microbiol Biotechnol		2025
	Potential mode of action of multispecies inoculums on wheat growth under water stress.	Agoussar A, Tremblay J, Yergeau E.	ISME Commun	10.1093/ismeco/ycaf095	2025
	Plant Growth-promoting Effects of Viable and Dead Spores of Bacillus pumilus TUAT1 on Setaria viridis.	Agake SI, Plucani do Amaral F, Yamada T, Sekimoto H, Stacey G, Yokoyama T, Ohkama-Ohtsu N.	Microbes Environ	10.1264/jsme2.me21060	2022
Genetics	Complete genome sequence data of Bacillus pumilus GLB197, an effective antagonist of grape downy mildew.	Zeng Q, Xie J, Zhang X, Li Y, Wang Q.	Data Brief	10.1016/j.dib.2020.105423	2020
Metabolism	Reducing arsenic in rice grains by leonardite and arsenic-resistant endophytic bacteria.	Dolphen R, Thiravetyan P.	Chemosphere	10.1016/j.chemosphere.2019.02.054	2019
	Identifying Key Pathogens and Effective Control Agents for Astragalus membranaceus var. mongholicus Root Rot.	Zhang B, Xia B, Wang C, Xiao O, Wang T, Zhao H, Dai X, Chen J, Wang Y, Kong Z.	J Fungi (Basel)	10.3390/jof11070544	2025
	Biopriming of Durum Wheat Seeds with Endophytic Diazotrophic Bacteria Enhances Tolerance to Fusarium Head Blight and Salinity.	Hadj Brahim A, Ben Ali M, Daoud L, Jlidi M, Akremi I, Hmani H, Feto NA, Ben Ali M.	Microorganisms	10.3390/microorganisms10050970	2022
	Effective biosynthesis of 2,5-furandicarboxylic acid from 5-hydroxymethylfurfural via a bi-enzymatic cascade system using bacterial laccase and fungal alcohol oxidase.	Yang F, Liu J, Li B, Li H, Jiang Z.	Biotechnol Biofuels Bioprod	10.1186/s13068-023-02406-z	2023
	Plant Growth-Promoting Bacteria from Tropical Soils: In Vitro Assessment of Functional Traits.	Nunes JF, da Silva MSRA, de Oliveira NFR, de Souza CR, Arcenio FS, de Lima BAT, Coelho IS, Zonta E.	Microorganisms	10.3390/microorganisms13102321	2025
Metabolism	Simultaneous production of commercial enzymes using agro industrial residues by statistical approach.	Viayaraghavan P, Jeba Kumar S, Valan Arasu M, Al-Dhabi NA.	J Sci Food Agric	10.1002/jsfa.9436	2019
	Metabolic activity of cryogenic soils in the subarctic zone of Siberia towards "green" bioplastics.	Prudnikova SV, Evgrafova SY, Volova TG.	Chemosphere	10.1016/j.chemosphere.2020.128180	2021
	Local drug delivery for regeneration and disinfection in endodontics: A narrative review.	Swaroop AE, Mathew S, Harshini P, Nagaraja S.	J Conserv Dent Endod	10.4103/jcde.jcde_801_24	2025
	Engineering caveolin-mediated endocytosis in Saccharomyces cerevisiae.	Zhang Q, Li N, Lyv Y, Yu S, Zhou J.	Synth Syst Biotechnol	10.1016/j.synbio.2022.06.008	2022
	Sustainable management strategies for bacterial wilt of sweet peppers (Capsicum annuum) and other Solanaceous crops.	Mamphogoro TP, Babalola OO, Aiyegoro OA.	J Appl Microbiol	10.1111/jam.14653	2020
	Correction for Zarza et al., "Complete Genome Sequences of Two Bacillus pumilus Strains from Cuatrociénegas, Coahuila, Mexico".	Zarza E, Alcaraz LD, Aguilar-Salinas B, Islas A, Olmedo-Alvarez G.	Microbiol Resour Announc	10.1128/mra.01253-18	2018
Enzymology	Integrated thermophilic enzyme-immobilized reactor and high-rate biological reactors for treatment of palm oil-containing wastewater without sludge production.	Saranya P, Selvi PK, Sekaran G.	Bioprocess Biosyst Eng	10.1007/s00449-019-02104-x	2019
Enzymology	Bismuth Vanadate/Bilirubin Oxidase Photo(bio)electrochemical Cells for Unbiased, Light-Triggered Electrical Power Generation.	Mukha D, Cohen Y, Yehezkeli O.	ChemSusChem	10.1002/cssc.202000001	2020
	Partial replacement of corn silage with sorghum-sudangrass silage improves growth performance and rumen function in Hu sheep via microbial and metabolic modulation.	Li C, Cheng Z, Sun X, Yang J, Chen N, Yang K, Wang M.	BMC Microbiol	10.1186/s12866-025-04211-0	2025
	Survivor microbial populations in post-chlorinated wastewater are strongly associated with untreated hospital sewage and include ceftazidime and meropenem resistant populations.	Beattie RE, Skwor T, Hristova KR.	Sci Total Environ	10.1016/j.scitotenv.2020.140186	2020
	Removal of Phenols in Table Olive Processing Wastewater by Using a Mixed Inoculum of Candida boidinii and Bacillus pumilus: Effects of Inoculation Dynamics, Temperature, pH, and Effluent Age on the Abatement Efficiency.	Campaniello D, Speranza B, Altieri C, Sinigaglia M, Bevilacqua A, Corbo MR.	Microorganisms	10.3390/microorganisms9081783	2021
	Effects of Bacillus amyloliquefaciens and Bacillus pumilus on Rumen and Intestine Morphology and Microbiota in Weanling Jintang Black Goat.	Zhang N, Wang L, Wei Y.	Animals (Basel)	10.3390/ani10091604	2020
Genetics	Comparative genomic analyses reveal genetic characteristics and pathogenic factors of Bacillus pumilus HM-7.	Wang Q, Zhang L, Zhang Y, Chen H, Song J, Lyu M, Chen R, Zhang L.	Front Microbiol	10.3389/fmicb.2022.1008648	2022
	Simultaneous production of commercial enzymes using agro industrial residues by statistical approach	Viayaraghavan P, Jeba Kumar S, Valan Arasu M, Al-Dhabi NA.	Journal of the Science of Food and Agriculture.		2019
Pathogenicity	Biological control of Pseudomonas syringae pv. aptata on sugar beet with Bacillus pumilus SS-10.7 and Bacillus amyloliquefaciens (SS-12.6 and SS-38.4) strains.	Nikolic I, Beric T, Dimkic I, Popovic T, Lozo J, Fira D, Stankovic S.	J Appl Microbiol	10.1111/jam.14070	2019
Metabolism	Understanding the biochemical characteristics of struvite bio-mineralising microorganisms and their future in nutrient recovery.	Leng Y, Colston R, Soares A.	Chemosphere	10.1016/j.chemosphere.2019.125799	2020
	Biosurfactant from endophytic Bacillus pumilus 2A: physicochemical characterization, production and optimization and potential for plant growth promotion.	Marchut-Mikolajczyk O, Drozdzynski P, Polewczyk A, Smulek W, Antczak T.	Microb Cell Fact	10.1186/s12934-021-01533-2	2021
	Exploring the Interaction Dynamics of Growth-Promoting Bacterial Endophytes and Fertilizer on Oryza sativa L. Under Heat Stress.	Dlamini WN, Yu KP, Chen WC, Shen FT.	Rice (N Y)	10.1186/s12284-025-00781-9	2025
	Medium optimization to analyze the protein composition of Bacillus pumilus HR10 antagonizing Sphaeropsis sapinea.	Dai Y, Wang YH, Li M, Zhu ML, Wen TY, Wu XQ.	AMB Express	10.1186/s13568-022-01401-1	2022
Metabolism	N-Terminal Fused Signal Peptide Prompted Extracellular Production of a Bacillus-Derived Alkaline and Thermo Stable Xylanase in E. coli Through Cell Autolysis.	Zhang F, He H, Deng T, Ge H, Yu C, Feng L, Huang F, Yi L.	Appl Biochem Biotechnol	10.1007/s12010-020-03323-9	2020
	First Report of Bacillus pumilus Causing Trunk Bulges of Rubber Tree (Hevea brasiliensis) in Malaysia	Mazlan S, Zulperi D, Wahab A, Jaafar NM, Sulaiman Z, Rajandas H.	Plant Dis	10.1094/pdis-08-18-1409-pdn	2019
Metabolism	A novel ex-situ bio-remediation process for perchlorate contaminated soil.	Nair RR, Russel JG, Pradeep S, Ajay SV, Krishnakumar B.	Chemosphere	10.1016/j.chemosphere.2020.125947	2020
	Homogeneous Polymerization of Kraft Lignin Using an Alkaliphilic Multi-Copper Oxidase (Bilirubin Oxidase) in a Borate Buffer.	Delugeau L, Camy A, Alembik L, Poulin P, Gounel S, Mano N, Peruch F, Grelier S.	Polymers (Basel)	10.3390/polym17060779	2025
	The investigation into the physicochemical properties of fermented soybean meal and its effects as a substitute for soybean meal on the growth performance and intestinal development of broiler chickens.	Zhao M, Chen X, Li S, Liu G, Chen Z, Yang P, Meng K, Zheng A.	Poult Sci	10.1016/j.psj.2025.105670	2025
Genetics	Antagonism of Bacillus velezensis ZGE166 Against the Pathogenic Fungi Causing Corm Rot Disease in Saffron (Crocus sativus L.).	Guo Y, Tian L, Zhu X, Liu S, Wang L, Li W.	Microb Ecol	10.1007/s00248-025-02539-8	2025
	Diversity of Fast-Growth Spore-Forming Microbes and Their Activity as Plant Partners.	Artigas Ramirez MD, Agake SI, Maeda M, Kojima K, Ohkama-Ohtsu N, Yokoyama T.	Microorganisms	10.3390/microorganisms11020232	2023
Pathogenicity	Oral probiotic administration attenuates postexercise inflammation in horses.	Jacobs RD, Grum D, Trible B, Ayala DI, Karnezos TP, Gordon ME.	Transl Anim Sci	10.1093/tas/txae124	2024
	From marine neglected substrata new fungal taxa of potential biotechnological interest: the case of Pelagia noctiluca.	Pasqualetti M, Braconcini M, Barghini P, Gorrasi S, Schillaci D, Ferraro D, Della Sala G, De Marino S, Fenice M.	Front Microbiol	10.3389/fmicb.2024.1473269	2024
	Meconium microbiota in naturally delivered canine puppies.	Bertero A, Banchi P, Del Carro A, Corro M, Colitti B, Van Soom A, Bertolotti L, Rota A.	BMC Vet Res	10.1186/s12917-024-04225-2	2024
Pathogenicity	Repurposing of Existing Drugs for the Bacterial Infections: An In silico and In vitro Study.	Kapoor Y, Sharma R, Kumar A.	Infect Disord Drug Targets	10.2174/1871526519666181126094244	2020
Phylogeny	Molecular identification of Proteus mirabilis, Vibrio species leading to CRISPR-Cas9 modification of tcpA and UreC genes causing cholera and UTI.	Naveed M, Tahir F, Aziz T, Waseem M, Makhdoom SI, Ali N, Alharbi M, Albekairi TH, Alasmari AF.	Sci Rep	10.1038/s41598-024-59340-9	2024
	New N-amino-5-cyano-6-pyridones as antimicrobial small molecules endowed with DNA gyrase a inhibitory activity: design, one-pot synthesis, biological assessment and in silico insights.	Kamaly OA, Younes AS, Harras MF, Sabour R, Alsfouk AA, Ibrahim MH.	BMC Chem	10.1186/s13065-024-01342-9	2024
	Transformations of Diatom-Derived Dissolved Organic Matter by Bacillus pumilus Under Warming and Acidification Conditions.	Liu Y, Wang X, Sun J.	Front Microbiol	10.3389/fmicb.2022.833670	2022
	Impacts of Bacillus amyloliquefaciens and Trichoderma spp. on Pac Choi (Brassica rapa var. chinensis) grown in different hydroponic systems.	Plocek G, Rueda Kunz D, Simpson C.	Front Plant Sci	10.3389/fpls.2024.1438038	2024
	Touching Surfaces - Presence of microorganisms on antimicrobial metal surfaces on the International Space Station and in German schools.	Kramer CL, Muller DW, Arndt F, Rehm A, Walkenfort B, Ahmed AS, Haben A, Schiele A, Auerhammer A, Hasenberg M, Boschert AL, Kautenburger R, Leuko S, Janssen S, Maurer M, Mucklich F, Siems K.	BMC Microbiol	10.1186/s12866-025-04316-6	2025
	Performance evaluation of the sterilization process with Bowie & Dick test and biological indicator in the quality control of a blood bank in Peru.	Lagos-Palomino L, Rueda-Torres L, Sanchez-Holguin G, Soncco-Llulluy F, Rosales-Rimache J.	Medicine (Baltimore)	10.1097/md.0000000000035293	2023
	Characterization of Newly Discovered Polyester Polyurethane-Degrading Methylobacterium aquaticum Strain A1.	Lee SH, Jeong H, Jung I, Choi M, Kim AR.	J Basic Microbiol	10.1002/jobm.70066	2025
	Rhizobacterial colonization of bermudagrass by Bacillus spp. in a Marvyn loamy sand soil	Coy RM, Held DW, Kloepper JW.	Appl Soil Ecol	10.1016/j.apsoil.2019.04.018	2019
	Bacteriota and Antibiotic Resistance in Spiders.	Kacaniova M, Terentjeva M, Kowalczewski PL, Babosova M, Porhajasova JI, Hikal WM, Fedoriak M.	Insects	10.3390/insects13080680	2022
	Characterization of potential plant growth-promoting rhizobacteria isolated from sunflower (Helianthus annuus L.) in Iran.	Khezrinejad N, Khodakaramian G, Shahryari F.	Biol Futur	10.1556/019.70.2019.30	2019
	Improvement of durum wheat growth under combined abiotic stresses by multitolerant strain of Pantoea agglomerans for sustainable agricultural approach.	Bouremani N, Saadaoui N, Silini A, Belbahi A, Oszako T, Jalinik M, Luniewski S, Cherif-Silini H.	Sci Rep	10.1038/s41598-025-22257-y	2025
Phylogeny	In vitro Sequestration of Molecular and Mass Spectra Characterized Metallophilic Cadmium Tolerant Bacteria for Sustainable Agriculture.	Uqab B, Nazir R, Ganai BA, Rahi P.	Front Microbiol	10.3389/fmicb.2022.845853	2022
	Extraction of Heat-Stabilised Defatted Rice Bran Protein by Solid-State Fermentation Using Heterofermentative Microbes from Traditional Asian Starters.	Ugyen U, Singanusong R, Phinyo M, Changtor P, Chaijamrus S, Thongsook T.	Food Technol Biotechnol	10.17113/ftb.61.04.23.8255	2023
Transcriptome	Current Classification of the Bacillus pumilus Group Species, the Rubber-Pathogenic Bacteria Causing Trunk Bulges Disease in Malaysia as Assessed by MLSA and Multi rep-PCR Approaches.	Husni AAA, Ismail SI, Jaafar NM, Zulperi D.	Plant Pathol J	10.5423/ppj.oa.02.2021.0017	2021
	Green synthesis of silver nanoparticles by Kocuria flava isolated from photovoltaic panels for combating infections, cancer, and water pollution.	Prajapati V, Panchal D, Dikshit M, Patel R, Bhavsar S, Patel A, Sahoo DK, Luhana K.	Front Microbiol	10.3389/fmicb.2025.1658320	2025
Genetics	Physiological and Genomic Analysis of Bacillus pumilus UAMX Isolated from the Gastrointestinal Tract of Overweight Individuals.	Reyes-Cortes JL, Azaola-Espinosa A, Lozano-Aguirre L, Ponce-Alquicira E.	Microorganisms	10.3390/microorganisms9051076	2021
Enzymology	ThermoSlope: A Software for Determining Thermodynamic Parameters from Single Steady-State Experiments.	Lund BA, Brandsdal BO.	Molecules	10.3390/molecules26237155	2021
Metabolism	The Proteomic Response of Bacillus pumilus Cells to Glucose Starvation.	Handtke S, Albrecht D, Otto A, Becher D, Hecker M, Voigt B.	Proteomics	10.1002/pmic.201700109	2018
	Bacillus secretes nucleases to degrade dsRNA, thereby reducing host's susceptibility to RNAi.	Han X, Li H, Xu S, Miao X, Guan R.	NPJ Biofilms Microbiomes	10.1038/s41522-025-00757-z	2025
	Biological control of green mould and dry bubble diseases of cultivated mushroom (Agaricus bisporus L.) by Bacillus spp.	Stanojevic O, Slavisa S, Beric T, Potocnik I, Rekanovic E, Stankovic S, Milijasevic-Marcic S.	Crop Prot	10.1016/j.cropro.2019.104944	2019
Transcriptome	Universal receptive system as a novel regulator of transcriptomic activity of Staphylococcus aureus.	Tetz G, Kardava K, Vecherkovskaya M, Khodadadi-Jamayran A, Tsirigos A, Tetz V.	Microb Cell Fact	10.1186/s12934-024-02637-1	2025
	Marine chitinase AfChi: green defense management against Colletotrichum gloeosporioides and anthracnose.	K M R, Raval K, Raval R.	AMB Express	10.1186/s13568-024-01786-1	2024
Metabolism	Safety and probiotic evaluation of two Bacillus strains producing antioxidant compounds.	Kotowicz N, Bhardwaj RK, Ferreira WT, Hong HA, Olender A, Ramirez J, Cutting SM.	Benef Microbes	10.3920/bm2019.0040	2019
Metabolism	Phylogenetic analysis of halophyte-associated rhizobacteria and effect of halotolerant and halophilic phosphate-solubilizing biofertilizers on maize growth under salinity stress conditions.	Mukhtar S, Zareen M, Khaliq Z, Mehnaz S, Malik KA.	J Appl Microbiol	10.1111/jam.14497	2020
	Characterization and functional study of Galectin3 from Japanese flounder (Paralichthys olivaceus).	Ji X, Liu X, Li X, Zhou S, Xiu Y.	Fish Shellfish Immunol	10.1016/j.fsi.2020.04.012	2020
	Establishment of a markerless multiple-gene deletion method based on Cre/loxP mutant system for Bacillus pumilus.	Guan ZB, Wang KQ, Shui Y, Liao XR.	J Basic Microbiol	10.1002/jobm.201700370	2017
	Characterization of Feruloyl Esterase from Bacillus pumilus SK52.001 and Its Application in Ferulic Acid Production from De-Starched Wheat Bran.	Duan X, Dai Y, Zhang T.	Foods	10.3390/foods10061229	2021
	Efficacy of an impression disinfectant solution after repeated use: An in vitro study.	Chukwu S, Munn A, Wilson JC, Ibrahim H, Gosling D, Love RM, Bakr MM.	Heliyon	10.1016/j.heliyon.2023.e23792	2024
Pathogenicity	Effect of biosynthesis of ZnO nanoparticles via Cucurbita seed extract on Culex tritaeniorhynchus mosquito larvae with its biological applications.	K V, S S, G M, M KK.	J Photochem Photobiol B	10.1016/j.jphotobiol.2019.111650	2019
	Monitoring the Biodegradation Progress of Naphthenic Acids in the Presence of Spirulina platensis Algae.	Gheorghe CG, Dusescu-Vasile CM, Popovici DR, Bombos D, Dragomir RE, Dima FM, Bajan M, Vasilievici G.	Toxics	10.3390/toxics13050368	2025
Enzymology	A simplified quick microbial genomic DNA extraction via freeze-thawing cycles.	Chen F, Ye J, Chio C, Liu W, Shi J, Qin W.	Mol Biol Rep	10.1007/s11033-019-05176-w	2020
Pathogenicity	Bacillus Strains Associated to Homoscleromorpha Sponges are Highly Active Against Multidrug Resistant Bacteria.	Freitas-Silva J, Silva-Oliveira T, Muricy G, Laport MS.	Curr Microbiol	10.1007/s00284-019-01870-x	2020
Metabolism	Bilirubin oxidase-based silica macrocellular robust catalyst for on line dyes degradation.	Roucher A, Roussarie E, Gauvin RM, Rouhana J, Gounel S, Stines-Chaumeil C, Mano N, Backov R.	Enzyme Microb Technol	10.1016/j.enzmictec.2018.10.004	2019
	Microbial diversity at remediated former gold and copper mines and the metal tolerance of indigenous microbial strains.	Velianyk V, Palusak M, Nguyen NHA, Riha J, Sevcu A, Cernik M, Hlavackova V.	Appl Environ Microbiol	10.1128/aem.02555-24	2025
Pathogenicity	An antimicrobial peptide specifically active against Listeria monocytogenes is secreted by Bacillus pumilus SF214.	Saggese A, De Luca Y, Baccigalupi L, Ricca E.	BMC Microbiol	10.1186/s12866-021-02422-9	2022
	Characterization and bioefficacy of grapevine bacterial endophytes against Colletotrichum gloeosporioides causing anthracnose disease.	Holkar SK, Bhanbhane VC, Ghotgalkar PS, Markad HN, Lodha TD, Saha S, Banerjee K.	Front Microbiol	10.3389/fmicb.2024.1502788	2024
	Isolation, screening, and identification of chitinase-producing bacterial strains from riverbank soils at Ambo, Western Ethiopia.	Gonfa TG, Negessa AK, Bulto AO.	Heliyon	10.1016/j.heliyon.2023.e21643	2023
Genetics	Comparative Genome Analysis of Two Bacillus pumilus Strains Producing High Level of Extracellular Hydrolases.	Pudova DS, Toymentseva AA, Gogoleva NE, Shagimardanova EI, Mardanova AM, Sharipova MR.	Genes (Basel)	10.3390/genes13030409	2022
	Biodegradation Study of Used Engine Oil by Free and Immobilized Cells of the Pseudomonas oleovorans Strain NMA and Their Growth Kinetics.	Nisar N, Fareed A, Naqvi STA, Zeb BS, Amin BAZ, Khurshid G, Zaffar H.	ACS Omega	10.1021/acsomega.4c06964	2025
Enzymology	Two novel cationic antifungal peptides isolated from Bacillus pumilus HN-10 and their inhibitory activity against Trichothecium roseum.	Yan H, Yun J, Ai D, Zhang W, Bai J, Guo J.	World J Microbiol Biotechnol	10.1007/s11274-017-2392-5	2018
Enzymology	Aflatoxin B₁ (AFB₁) biodegradation by a lignolytic phenoloxidase of Trametes hirsuta.	Soylemez T, Berger RG, Krings U, Yamac M.	Sci Rep	10.1038/s41598-025-90711-y	2025
Metabolism	Enrichment of polycyclic aromatic hydrocarbon metabolizing microorganisms on the oral mucosa of tobacco users.	Tao L, Chiarelli MP, Pavlova S, Kolokythas A, Schwartz J, DeFrancesco J, Salameh B, Green SJ, Adami G.	PeerJ	10.7717/peerj.16626	2024
	Draft Genome Sequences of Sporulation-Impaired Bacillus pumilus Strain NRS576 and Its Native Plasmid p576.	Val-Calvo J, Miguel-Arribas A, Gago-Cordoba C, Lopez-Perez A, Ramachandran G, Singh PK, Ramos-Ruiz R, Meijer WJJ.	Microbiol Resour Announc	10.1128/mra.00089-19	2019
	Molecular modeling and MD-simulation studies: Fast and reliable tool to study the role of low-redox bacterial laccases in the decolorization of various commercial dyes.	Ahlawat S, Singh D, Virdi JS, Sharma KK.	Environ Pollut	10.1016/j.envpol.2019.07.083	2019
	Deep Functional Profiling of Wild Animal Microbiomes Reveals Probiotic Bacillus pumilus Strains with a Common Biosynthetic Fingerprint.	Baranova MN, Kudzhaev AM, Mokrushina YA, Babenko VV, Kornienko MA, Malakhova MV, Yudin VG, Rubtsova MP, Zalevsky A, Belozerova OA, Kovalchuk S, Zhuravlev YN, Ilina EN, Gabibov AG, Smirnov IV, Terekhov SS.	Int J Mol Sci	10.3390/ijms23031168	2022
	Biochar mediates microbial communities and their metabolic characteristics under continuous monoculture.	Wu H, Qin X, Wu H, Li F, Wu J, Zheng L, Wang J, Chen J, Zhao Y, Lin S, Lin W.	Chemosphere	10.1016/j.chemosphere.2020.125835	2020
	Effective feather degradation and keratinase production by Bacillus pumilus GRK for its application as bio-detergent additive.	Ramakrishna Reddy M, Sathi Reddy K, Ranjita Chouhan Y, Bee H, Reddy G.	Bioresour Technol	10.1016/j.biortech.2017.06.067	2017
	A buffalo rumen-derived probiotic (SN-6) could effectively increase simmental growth performance by regulating fecal microbiota and metabolism.	Yang S, Luo J, Chen Y, Wu R, Liu H, Zhou Z, Akhtar M, Xiao Y, Shi D.	Front Microbiol	10.3389/fmicb.2022.935884	2022
Enzymology	Isolation and characterization of a new cold-active protease from psychrotrophic bacteria of Western Himalayan glacial soil.	Farooq S, Nazir R, Ganai SA, Ganai BA.	Sci Rep	10.1038/s41598-021-92197-w	2021
	Dietary Administration of Postbiotics from Vibrio proteolyticus DCF12.2 Enhanced Intestinal Integrity, Microbiota, and Immune Response in Juvenile Gilthead Seabream (Sparus aurata).	Perez-Gomez O, Rohra-Benitez S, Dominguez-Maqueda M, Cerezo IM, Galafat A, Martinez-Manzanares E, Mancera JM, Alarcon-Lopez FJ, Garcia-Marquez J, Morinigo MA, Arijo S.	Animals (Basel)	10.3390/ani15131982	2025
Biotechnology	Recent Applications and Prospects of Enzymes in Quality and Safety Control of Fermented Foods.	Dai Y, Chen Y, Lin X, Zhang S.	Foods	10.3390/foods13233804	2024
	Lipopeptides from Bacillus: unveiling biotechnological prospects-sources, properties, and diverse applications.	Saiyam D, Dubey A, Malla MA, Kumar A.	Braz J Microbiol	10.1007/s42770-023-01228-3	2024
	Antibacterial Activity of Endophytic Bacteria Against Sugar Beet Root Rot Agent by Volatile Organic Compound Production and Induction of Systemic Resistance.	Safara S, Harighi B, Bahramnejad B, Ahmadi S.	Front Microbiol	10.3389/fmicb.2022.921762	2022
	Improving oxidative stability of cream powder using pomegranate concentrate and peel extract.	Khademi SA, Eskandari MH, Golmakani MT, Niakousari M, Hashemi H.	Food Sci Nutr	10.1002/fsn3.4248	2024
Genetics	A Priestia megaterium MF3 with high-efficiency zearalenone degradation: functional genomic insights and mechanistic exploration.	Meng D, Xu KZ, Hou HJ, Liu JB, Deng DD, Li JM, Fang YK, Zhu XQ, Pei DL.	Front Microbiol	10.3389/fmicb.2025.1630165	2025
	Isolation and characterization of halotolerant bacilli from chickpea (Cicer arietinum L.) rhizosphere for plant growth promotion and biocontrol traits	Sharma A, Kashyap PL, Srivastava AK, Bansal YK, Kaushik R.	Eur J Plant Pathol	10.1007/s10658-018-1592-7	2019
	Effects of novel probiotic strains of Bacillus pumilus and Bacillus subtilis on production, gut health, and immunity of broiler chickens raised under suboptimal conditions.	Bilal M, Si W, Barbe F, Chevaux E, Sienkiewicz O, Zhao X.	Poult Sci	10.1016/j.psj.2020.11.048	2021
	Biosynthesis of silver nanoparticles by cell-free extracts from some bacteria species for dye removal from wastewater	Allam NG, Ismail GA, El-Gemizy WM, Salem MA.	Biotechnol Lett		2019
Metabolism	Production, characterization and antimicrobial activities of bio-pigments by Aquisalibacillus elongatus MB592, Salinicoccus sesuvii MB597, and Halomonas aquamarina MB598 isolated from Khewra Salt Range, Pakistan.	Fariq A, Yasmin A, Jamil M.	Extremophiles	10.1007/s00792-019-01095-7	2019
	Antimicrobial activity of partially characterized analytes from Bacillus pumilus(B2)	Nayak S, Limsuwan C, Chichurd N, Kuhlmann K, Pungpang S.	Aquac Res		2017
Genetics	Mechanism of a novel Bacillus subtilis JNF2 in suppressing Fusarium oxysporum f. sp. cucumerium and enhancing cucumber growth.	Yang F, Wang X, Jiang H, Yao Q, Liang S, Chen W, Shi G, Tian B, Hegazy A, Ding S.	Front Microbiol	10.3389/fmicb.2024.1459906	2024
	Bio-bleaching of ankara pulp with xylanase-producing bacterial consortium for sustainable handmade paper production.	Rajput M, Pamecha D, Kumari P, Chaturvedi P, Sharma C, Mishra R, Chauhan S.	Curr Res Microb Sci	10.1016/j.crmicr.2024.100262	2024
	Identification of bacterial species in probiotic consortiums in selected commercial cleaning preparations.	Jezewska-Frackowiak J, Zebrowska J, Czajkowska E, Jasinska J, Peksa M, Jedrzejczak G, Skowron PM.	Acta Biochim Pol	10.18388/abp.2018_2782	2019
	Case Report: Bacillus pumilus-Caused Bacteremia in a Patient with Food Poisoning.	Shah MM, Miringu G, Wada A, Kaneko S, Ichinose Y.	Am J Trop Med Hyg	10.4269/ajtmh.18-0593	2019
	Comprehensive pathogen identification and antimicrobial resistance prediction from positive blood cultures using nanopore sequencing technology.	Liu PY, Wu HC, Li YL, Cheng HW, Liou CH, Chen FJ, Liao YC.	Genome Med	10.1186/s13073-024-01416-2	2024
	Differential antagonistic responses of Bacillus pumilus MSUA3 against Rhizoctonia solani and Fusarium oxysporum causing fungal diseases in Fagopyrum esculentum Moench.	Agarwal M, Dheeman S, Dubey RC, Kumar P, Maheshwari DK, Bajpai VK.	Microbiol Res	10.1016/j.micres.2017.08.012	2017
	Facile coconut inflorescence sap mediated synthesis of silver nanoparticles and its diverse antimicrobial and cytotoxic properties.	M K R, K S M, Nair SS, B Krishna K, T M S, K P S, K S, H S, T S Keshava P, Neeli C, Karunasagar I, K B H, Karun A.	Mater Sci Eng C Mater Biol Appl	10.1016/j.msec.2020.110834	2020
	Degradation of fluorene and phenanthrene in PAHs-contaminated soil using Pseudomonas and Bacillus strains isolated from oil spill sites.	Rabodonirina S, Rasolomampianina R, Krier F, Drider D, Merhaby D, Net S, Ouddane B.	J Environ Manage	10.1016/j.jenvman.2018.11.005	2019
	Maize Crops Under Rising Temperatures: Bacterial Influence on Biochemical and Lipidomic Changes Induced by Heat	Pinto R, Cardoso P, Carneiro B, Pinto G, Bedia C, Figueira E.	Plants (Basel)		2025
	Effects of passages through an insect or a plant on virulence and physiological properties of the fungus Metarhizium robertsii.	Tomilova OG, Kryukov VY, Kryukova NA, Tolokonnikova KP, Tokarev YS, Rumiantseva AS, Alekseev AA, Glupov VV.	PeerJ	10.7717/peerj.15726	2023
	Evaluation of Biocompatibility and Antagonistic Properties of Microorganisms Isolated from Natural Sources for Obtaining Biofertilizers Using Microalgae Hydrolysate.	Babich O, Sukhikh S, Dyshlyuk L, Shishko O, Milentyeva I, Prosekov A, Pavsky V, Ivanova S, Dolganyuk V.	Microorganisms	10.3390/microorganisms9081667	2021
	Isolation, identification and in vitro characterization of grapevine rhizobacteria to control ochratoxigenic Aspergillus spp. on grapes	Arfaoui M, Vallance J, Bruez E, Rezgui A, Melki I, Chebil S, Sadfi-Zouaoui N, Rey P.	Biol Control	10.1016/j.biocontrol.2018.10.019	2019
Metabolism	Simulation of a surface spill of different diesel/biodiesel mixtures in an ultisol, using natural attenuation and bioaugmentation/biostimulation.	Meyer DD, Beker SA, Heck K, Peralba MDCR, Bento FM.	An Acad Bras Cienc	10.1590/0001-3765201820170268	2018
	Wobble Editing of Cre-box by Unspecific CRISPR/Cas9 Causes CCR Release and Phenotypic Changes in Bacillus pumilus.	Wang Y, Cao L, Bi M, Wang S, Chen M, Chen X, Ying M, Huang L.	Front Chem	10.3389/fchem.2021.717609	2021
	Complete Genome Sequence of Plant Growth-Promoting Bacillus pumilus TUAT1.	Okazaki S, Sano N, Yamada T, Ishii K, Kojima K, Djedidi S, Artigas Ramirez MD, Yuan K, Kanekatsu M, Ohkama-Ohtsu N, Hirose Y, Oshima K, Hattori M, Yokoyama T.	Microbiol Resour Announc	10.1128/mra.00076-19	2019
	A Microbiological Approach to Alleviate Soil Replant Syndrome in Peaches.	Newberger DR, Minas IS, Manter DK, Vivanco JM.	Microorganisms	10.3390/microorganisms11061448	2023
	Dendropanax morbifera Extracts for Cosmetic Applications: Systematic Review and Meta-Analysis.	Ngoc LTN, Moon JY, Lee YC.	Curr Issues Mol Biol	10.3390/cimb46120808	2024
	Dual Application of p-Nitrophenol Alkanoate-Based Assay for Soil Selection and Screening of Microbial Strains for Bioplastic Degradation.	Shin N, Oh J, Kim S, Lee Y, Shin Y, Choi S, Bhatia SK, Yang YH.	J Microbiol Biotechnol	10.4014/jmb.2403.03013	2024
	Screening of bioflocculant and cellulase-producing bacteria strains for biofloc culture systems with fiber-rich carbon source.	Wu J, Chen Y, Xu X, Ren W, Zhang X, Cai X, Huang A, Zeng Y, Long H, Xie Z.	Front Microbiol	10.3389/fmicb.2022.969664	2022
Metabolism	Functional expression enhancement of Bacillus pumilus CotA-laccase mutant WLF through site-directed mutagenesis.	Luo Q, Chen Y, Xia J, Wang KQ, Cai YJ, Liao XR, Guan ZB.	Enzyme Microb Technol	10.1016/j.enzmictec.2017.07.013	2018
	Metabolites produced by inoculated Vigna radiata during bacterial assisted phytoremediation of Pb, Ni and Cr polluted soil.	Zulfiqar U, Yasmin A, Fariq A.	PLoS One	10.1371/journal.pone.0277101	2022
	Bacterial Carbonate Precipitation Using Active Metabolic Pathway to Repair Mortar Cracks.	Raza A, Khushnood RA.	Materials (Basel)	10.3390/ma15196616	2022
Metabolism	Enhanced extracellular gamma glutamyl transpeptidase production by overexpressing of PrsA lipoproteins and improving its mRNA stability in Bacillus subtilis and application in biosynthesis of L-theanine.	Yang T, Irene K, Liu H, Liu S, Zhang X, Xu M, Rao Z.	J Biotechnol	10.1016/j.jbiotec.2019.06.302	2019
	Mechanism on the promotion of host growth and enhancement of salt tolerance by Bacillaceae isolated from the rhizosphere of Reaumuria soongorica.	Bao X, Chong P, He C, Wang X, Zhang F.	Front Microbiol	10.3389/fmicb.2024.1408622	2024
	Comparative Analysis of Microbial Consortiums and Nanoparticles for Rehabilitating Petroleum Waste Contaminated Soils.	Sattar S, Siddiqui S, Shahzad A, Bano A, Naeem M, Hussain R, Khan N, Jan BL, Yasmin H.	Molecules	10.3390/molecules27061945	2022
Metabolism	Improved thermostability and catalytic efficiency of overexpressed catalase from B. pumilus ML 413 (KatX2) by introducing disulfide bond C286-C289.	Samson M, Yang T, Omar M, Xu M, Zhang X, Alphonse U, Rao Z.	Enzyme Microb Technol	10.1016/j.enzmictec.2018.08.002	2018
	Optimization of Fermentation and Biocontrol Efficacy of Bacillus atrophaeus XHG-1-3m2.	Xu Z, Lu H, Shi W, Zhou X, Ren J, Zhang Y, Ma R.	Microorganisms	10.3390/microorganisms12112134	2024
	Screening signal peptides from Bacillus thuringiensis secretome for heterologous protein secretion.	Yang J, Xia Y, Zhu L, Wang Z, Song F, Guo S.	Appl Microbiol Biotechnol	10.1007/s00253-025-13533-y	2025
Phylogeny	MALDI-TOF MS Detection of Endophytic Bacteria Associated with Great Nettle (Urtica dioica L.), Grown in Algeria.	Toubal S, Bouchenak O, Elhaddad D, Yahiaoui K, Boumaza S, Arab K.	Pol J Microbiol	10.5604/01.3001.0011.6145	2018
Genetics	Role of CD38 in mediating the effect of Bacillus on acute pancreatitis: a study of mediated Mendelian randomization.	Xiao J, Tao Z, Luo M, Yan Y, Ke S, Mao B, Zhan J, Wang Z, Wang B, Li Z.	Front Immunol	10.3389/fimmu.2024.1452743	2024
	Comparative Characterization and Identification of Poly-3-hydroxybutyrate Producing Bacteria with Subsequent Optimization of Polymer Yield.	Rysbek A, Ramankulov Y, Kurmanbayev A, Richert A, Abeldenov S.	Polymers (Basel)	10.3390/polym14020335	2022
	Holistic Approaches to Plant Stress Alleviation: A Comprehensive Review of the Role of Organic Compounds and Beneficial Bacteria in Promoting Growth and Health.	Hathurusinghe SHK, Azizoglu U, Shin JH.	Plants (Basel)	10.3390/plants13050695	2024
Pathogenicity	Global quantification of phosphoproteins combining metabolic labeling and gel-based proteomics in B. pumilus.	Hentschker C, Dewald C, Otto A, Buttner K, Hecker M, Becher D.	Electrophoresis	10.1002/elps.201700220	2018
	Pharmacological Properties of Platycarpha glomerata Extracts-A Plant Used to Treat and Manage Elephantiasis.	Lamula SQN, Taliwe A, Buwa-Komoreng LV.	Int J Mol Sci	10.3390/ijms26020646	2025
Metabolism	Co-inoculation of Bacillus sp. and Pseudomonas putida at different development stages acts as a biostimulant to promote growth, yield and nutrient uptake of tomato.	He Y, Pantigoso HA, Wu Z, Vivanco JM.	J Appl Microbiol	10.1111/jam.14273	2019
	Cold-adapted Bacilli isolated from the Qinghai-Tibetan Plateau are able to promote plant growth in extreme environments.	Wu H, Gu Q, Xie Y, Lou Z, Xue P, Fang L, Yu C, Jia D, Huang G, Zhu B, Schneider A, Blom J, Lasch P, Borriss R, Gao X.	Environ Microbiol	10.1111/1462-2920.14722	2019
	Salt-Tolerant Bacteria Support Salinity Stress Mitigating Impact of Arbuscular Mycorrhizal Fungi in Maize (Zea mays L.).	Zaki RM, Afify AH, Ashour EH, El-Sawah AM.	Microorganisms	10.3390/microorganisms13061345	2025
	Approaches to stereoselective 1,1'-glycosylation.	Zucchetta D, Zamyatina A.	Beilstein J Org Chem	10.3762/bjoc.21.133	2025
	Bioremediation of a salty petrochemical wastewater containing bisphenol A by a novel indigenous Pseudomonas pseudoalcaligenes.	Jahanshahi S, Badiefar L, Khodabandeh M, Heidarnia MA, Yakhchali B.	RSC Adv	10.1039/d2ra06206b	2022
	Green extraction of puromycin-based antibiotics from Streptomyces albofaciens (MS38) for sustainable biopharmaceutical applications.	Singh N, Patil S, Shahnawaz M, Rai V, Patil A, Tripathi CKM, Wen F, Dong S, Cai D.	Front Chem	10.3389/fchem.2023.1326328	2023
Enzymology	Characterization of redox and salinity-tolerant alkaline protease from Bacillus halotolerans strain DS5.	Wen Y, Qiang J, Zhou G, Zhang X, Wang L, Shi Y.	Front Microbiol	10.3389/fmicb.2022.935072	2022
	Production of a Recombinant Fibrinolytic Protease from an Isolate of Serratia marcescens from the Amazon Basin	Souza T, Schwarz M, Rezende Correa P, Melo M, Mota A, Fernandes O, Mendonca-Lima L, Degrave W.	ACS Omega
Pathogenicity	Efficacy of viable Bacillus pumilus isolated from farmed fish on immune responses and increased disease resistance in Nile tilapia (Oreochromis niloticus): Laboratory and on-farm trials.	Srisapoome P, Areechon N.	Fish Shellfish Immunol	10.1016/j.fsi.2017.06.018	2017
Genetics	Analyses of the Complete Genome Sequence of the Strain Bacillus pumilus ZB201701 Isolated from Rhizosphere Soil of Maize under Drought and Salt Stress.	Zhang Z, Yin L, Li X, Zhang C, Zou H, Liu C, Wu Z.	Microbes Environ	10.1264/jsme2.me18096	2019
Metabolism	Biosynthesis of silver nanoparticles by cell-free extracts from some bacteria species for dye removal from wastewater.	Allam NG, Ismail GA, El-Gemizy WM, Salem MA.	Biotechnol Lett	10.1007/s10529-019-02652-y	2019
	Review of the existing maximum residue levels for Bacillus pumilus QST 2808 according to Article 12 of Regulation (EC) No 396/2005.	European Food Safety Authority (EFSA), Anastassiadou M, Bernasconi G, Brancato A, Carrasco Cabrera L, Greco L, Jarrah S, Kazocina A, Leuschner R, Magrans JO, Miron I, Nave S, Pedersen R, Reich H, Rojas A, Sacchi A, Santos M, Stanek A, Theobald A, Vagenende B, Verani A.	EFSA J	10.2903/j.efsa.2020.6115	2020
Cultivation	Efficient Plant Growth-Promoting (PGP) Native Actinomycetes-Formulated Consortia Mode and Assessed Shelf Life Using Low-Cost Dynamic Media.	Moorthy TS, Kannan R, Thiruvengadam R, Kadaikunnan S, Khaled JM, Venkidasamy B, Thiruvengadam M.	J Microbiol Biotechnol	10.4014/jmb.2409.09040	2025
	Screening canine sources for novel antimicrobials reveals the circular broad-spectrum bacteriocin, caledonicin, produced by Staphylococcus caledonicus.	O'Connor M, O'Connor PM, Hourigan D, Murray E, de Farias FM, Field D, Hill C, Ross RP.	Front Microbiol	10.3389/fmicb.2024.1470988	2024
	Bacillus and Paenibacillus species associated with extended shelf life milk during processing and storage	Mugadza DT, Buys E.	International journal of dairy technology.	10.1111/1471-0307.12474	2018
	Bridging Microbial Biocontrol and Phytochemical Biopesticides: Synergistic Approaches for Sustainable Crop Protection.	Rezaee Danesh Y, Mulet JM, Porcel R.	Plants (Basel)	10.3390/plants14223453	2025
Metabolism	Engineered Bacillus pumilus laccase-like multi-copper oxidase for enhanced oxidation of the lignin model compound guaiacol.	Ihssen J, Jankowska D, Ramsauer T, Reiss R, Luchsinger R, Wiesli L, Schubert M, Thony-Meyer L, Faccio G.	Protein Eng Des Sel	10.1093/protein/gzx026	2017
Pathogenicity	High pressure sensitization of heat-resistant and pathogenic foodborne spores to nisin.	Modugno C, Kmiha S, Simonin H, Aouadhi C, Diosdado Canizares E, Lang E, Andre S, Mejri S, Maaroufi A, Perrier-Cornet JM.	Food Microbiol	10.1016/j.fm.2019.103244	2019
Enzymology	Characterization of Bacillus megaterium, Bacillus pumilus, and Paenibacillus polymyxa isolated from a Pinot noir wine from Western Washington State.	von Cosmos NH, Watson BA, Fellman JK, Mattinson DS, Edwards CG.	Food Microbiol	10.1016/j.fm.2017.05.003	2017
	First Report of Bacillus pumilus Causing Fruit Rot on Muskmelon (Cucumis melo) in China	Song JH, Wu ZR, Zhang LX, Tan GJ, Wang S, Wang JJ.	Plant Dis	10.1094/pdis-08-17-1169-pdn	2018
	The impact of novel bacterial strains and their consortium on diflufenican degradation in the mineral medium and soil.	Ksiazek-Trela P, Potocki L, Szpyrka E.	Sci Rep	10.1038/s41598-025-02696-3	2025
	The influence of probiotic administration on the phagocytic and oxidative burst activity of neutrophils and monocytes in the peripheral blood of dairy cows during different lactation periods.	Brodzki P, Gorzkos H, Marczuk J, Lisiecka U, Junkuszew A, Krakowski L, Szczubial M, Brodzki N, Glodkowska K.	J Vet Res	10.2478/jvetres-2024-0043	2024
Metabolism	Integration of Bacterial Expansin on Agarolytic Complexes to Enhance the Degrading Activity of Red Algae by Control of Gelling Properties.	Jeong DW, Hyeon JE, Joo YC, Shin SK, Han SO.	Mar Biotechnol (NY)	10.1007/s10126-017-9782-4	2018
	Effects of Luteolin-7-O-Glucoside on Intestinal Microbiota Dysbiosis and Drug Resistance Transmission Caused by Raoultella ornithinolytica B1645-1: Modulating the Composition of Intestinal Microbiota and Promoting the Transfer of bla_NDM-1 Gene from Genus Enterococcus to Lactobacillus in Mice.	Wu Z, Gou R, Sha L, Yu C, Meng L, Jin Z.	Microorganisms	10.3390/microorganisms11102477	2023
	Dietary Bacillus spp. enhanced growth and disease resistance of weaned pigs by modulating intestinal microbiota and systemic immunity.	He Y, Jinno C, Kim K, Wu Z, Tan B, Li X, Whelan R, Liu Y.	J Anim Sci Biotechnol	10.1186/s40104-020-00498-3	2020
Metabolism	Degradation of Total Petroleum Hydrocarbon (TPH) in Contaminated Soil Using Bacillus pumilus MVSV3.	Varma SS, Lakshmi MB, Rajagopal P, Velan M.	Biocontrol Sci	10.4265/bio.22.17	2017
Stress	Predicting heat process efficiency in thermal processes when bacterial inactivation is not log-linear.	Desriac N, Vergos M, Achberger V, Coroller L, Couvert O.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2018.09.028	2019
	Biofilm Formation Reduction by Eugenol and Thymol on Biodegradable Food Packaging Material.	Pleva P, Bartosova L, Macalova D, Zalesakova L, Sedlarikova J, Janalikova M.	Foods	10.3390/foods11010002	2021
Enzymology	Analysis of Human Gut Microbiota Enzymes for Biotechnological and Food Industrial Applications.	Torres-Sanchez A, Luque G, Ortiz P, Ruiz-Rodriguez A, Lopez-Moreno A, Aguilera M.	Foods	10.3390/foods14101794	2025
Genetics	Whole genomes of deep-sea sponge-associated bacteria exhibit high novel natural product potential.	Hesketh-Best PJ, January GG, Koch MJ, Warburton PJ, Howell KL, Upton M.	FEMS Microbes	10.1093/femsmc/xtad005	2023
	[Exogenous Bacillus pumilus RNase (binase) suppresses the reproduction of reovirus serotype 1].	Efimova MA, Shah Mahmud R, Zelenikhin PV, Sabirova MI, Kolpakov AI, Ilinskaya ON.	Mol Biol (Mosk)	10.7868/s0026898416060045	2017
	Field Based Assessment of Capsicum annuum Performance with Inoculation of Rhizobacterial Consortia.	Kaushal M, Mandyal P, Kaushal R.	Microorganisms	10.3390/microorganisms7030089	2019
	A novel strategy for synthetic microbial community conversion of liquid pig manure into microbial fertilizer.	Wang B, Chang C, Wang Z, Hu Y, Xu W, Chen W, McLaughlin N.	Microb Cell Fact	10.1186/s12934-025-02801-1	2025
	Isolation of Bacillus altitudinis 5-DSW with Protease Activity from Deep-Sea Mineral Water and Preparation of Functional Active Peptide Fractions from Chia Seeds.	Jin H, Lee EG, Khalid F, Jo SW, Baik SH.	Microorganisms	10.3390/microorganisms12102048	2024
Biotechnology	Mechanisms of Arsenic Interaction in Bacillus subtilis and Related Species with Biotechnological Potential.	Valenzuela-Garcia LI, Alarcon-Herrera MT, Cisneros-Lozano E, Pedraza-Reyes M, Ayala-Garcia VM.	Int J Mol Sci	10.3390/ijms262110277	2025
	Identifying Root-Associated Endophytic Fungi and Bacteria in Festuca and Lolium Grasses from a Site in Lithuania.	Stakeliene V, Pasakinskiene I, Matijosiute S, Martunas J, Stukeniene G.	Microorganisms	10.3390/microorganisms13040799	2025
	Protective and therapeutic effects of Lactobacillus brevis PQ214320 and Bacillus subtilis PQ198038 Against experimental Trichinella Infection	El Shanawany E, Abdel-Razik R, Nofal A, Zalat R, Abouelmagd F.	PLoS Negl Trop Dis		2025
Enzymology	Genetic determinant of Bacillus pumilus lipase lethality and its application as positive selection cloning vector in Escherichia coli.	Mabizela-Mokoena NB, Limani SW, Ncube I, Piater LA, Litthauer D, Nthangeni MB.	Protein Expr Purif	10.1016/j.pep.2017.06.013	2017
	A Seed Endophytic Bacterium Cronobacter dublinensis BC-14 Enhances the Growth and Drought Tolerance of Echinochloa crus-galli.	Cheng S, Wang Q, Yang D, He Q, Deng J, Zhou Y, Zhang L, Jiang J.	Microorganisms	10.3390/microorganisms12122544	2024
Enzymology	Mechanisms underlying the biocontrol activity of Serratia marcescens YNAU-SM-1 against Phytophthora infestans in potato.	Liu C, Deng L, Dao J, Wang W, Huang X, Zhang Y, Yang Y, Lu S, Zhao J, Liu X.	BMC Plant Biol	10.1186/s12870-025-07218-x	2025
Metabolism	Extracellular Proteome Profiling of Bacillus pumilus SCU11 Producing Alkaline Protease for Dehairing.	Wang C, Yu S, Song T, He T, Shao H, Wang H.	J Microbiol Biotechnol	10.4014/jmb.1602.02042	2016
Phylogeny	Potential of mineral-solubilizing bacteria for physiology and growth promotion of Chenopodium quinoa Willd.	Rafique E, Mumtaz MZ, Ullah I, Rehman A, Qureshi KA, Kamran M, Rehman MU, Jaremko M, Alenezi MA.	Front Plant Sci	10.3389/fpls.2022.1004833	2022
	Isolation and characterization of salt-tolerant bacteria with plant growth-promoting activities from saline agricultural fields of Haryana, India.	Sharma A, Dev K, Sourirajan A, Choudhary M.	J Genet Eng Biotechnol	10.1186/s43141-021-00186-3	2021
	Essential oils from Carex meyeriana Kunth: Optimization of hydrodistillation extraction by response surface methodology and evaluation of its antioxidant and antimicrobial activities	Cui H, Pan HW, Wang PH, Yang XD, Zhai WC, Dong Y, Zhou HL.	Industrial crops and products.	10.1016/j.indcrop.2018.08.041	2018
Metabolism	Influence of endophytic Bacillus pumilus and EDTA on the phytoextraction of Cu from soil by using Cicer arietinum.	Ali B, Amna, Javed MT, Ali H, Munis MF, Chaudhary HJ.	Int J Phytoremediation	10.1080/15226514.2016.1216075	2017
	Optimization of the Cellulase Free Xylanase Production by Immobilized Bacillus Pumilus.	Kundu A, Majumdar B.	Iran J Biotechnol	10.21859/ijb.1658	2018
Metabolism	Hexadecane biodegradation of high efficiency by bacterial isolates from Santos Basin sediments.	Ferrari VB, Cesar A, Cayo R, Choueri RB, Okamoto DN, Freitas JG, Favero M, Gales AC, Niero CV, Saia FT, de Vasconcellos SP.	Mar Pollut Bull	10.1016/j.marpolbul.2019.03.050	2019
	Efficacy of certain bioagents on patho-physiological characters of wheat plants under wheat leaf rust stress	Omara RI, El-Kot GA, Fadel FM, Abdelaal KAA, Saleh EM.	Physiol Mol Plant Pathol	10.1016/j.pmpp.2018.12.010	2019
	Complete Genome Sequences of Two Bacillus pumilus Strains from Cuatrociénegas, Coahuila, Mexico.	Zarza E, Alcaraz LD, Aguilar-Salinas B, Islas A, Olmedo-Alvarez G.	Genome Announc	10.1128/genomea.00364-18	2018
Metabolism	A functional endonuclease Q exists in the bacterial domain: identification and characterization of endonuclease Q from Bacillus pumilus.	Shiraishi M, Ishino S, Cann I, Ishino Y.	Biosci Biotechnol Biochem	10.1080/09168451.2016.1277946	2017
	Occurrence, Diversity, and Character of Bacillaceae in the Solid Fermentation Process of Strong Aromatic Liquors.	Tong W, He P, Yang Y, Qiao Z, Huang D, Luo H, Feng X.	Front Microbiol	10.3389/fmicb.2021.811788	2021
Metabolism	Variation of preserving organic matter bound in interlayer of montmorillonite induced by microbial metabolic process.	Zhao Y, Dong F, Dai Q, Li G, Ma J.	Environ Sci Pollut Res Int	10.1007/s11356-017-9806-7	2018
Pathogenicity	A report on extensive lateral genetic reciprocation between arsenic resistant Bacillus subtilis and Bacillus pumilus strains analyzed using RAPD-PCR.	Khowal S, Siddiqui MZ, Ali S, Khan MT, Khan MA, Naqvi SH, Wajid S.	Mol Phylogenet Evol	10.1016/j.ympev.2016.12.010	2017
	Identification and characterization of the causative agents of Focal Ulcerative Dermatitis in commercial laying hens.	Ayala DI, Grum DS, Evans NP, Russo KN, Kimminau EA, Trible BR, Lahoti MM, Novak CL, Karnezos TP.	Front Vet Sci	10.3389/fvets.2023.1110573	2023
	Nisin-based therapy: a realistic and eco-friendly biocontrol strategy to contrast Xylella fastidiosa subsp. pauca infections in planta.	Sabri M, El Handi K, Valentini F, De Stradis A, Cara O, Calvano CD, Bianco M, Trani A, Elbeaino T.	Front Microbiol	10.3389/fmicb.2024.1406672	2024
	1-Acyl-3-0-[beta-glucopyranosyl-(1"-+ 6')-beta-glucopyranosyl]-glycerols and Cordycedipeptides B and C, New Metabolites from Bacillus pumilus.	Wang H, Drawert F, Steinert M, Schulz S, Laatsch H.	Nat Prod Commun	10.1177/1934578x1601100936	2016
Phylogeny	Biocontrol potential of Halotolerant bacterial chitinase from high yielding novel Bacillus Pumilus MCB-7 autochthonous to mangrove ecosystem.	Rishad KS, Rebello S, Shabanamol PS, Jisha MS.	Pestic Biochem Physiol	10.1016/j.pestbp.2016.09.005	2017
	Characterization and photocatalytic activity of TiO₂ nanoparticles on cotton fabrics, for antibacterial masks.	Alvarez-Amparan MA, Martinez-Cornejo V, Cedeno-Caero L, Hernandez-Hernandez KA, Cadena-Nava RD, Alonso-Nunez G, Moyado SF.	Appl Nanosci	10.1007/s13204-022-02634-z	2022
Enzymology	Effects of pH and Metal Ions on the Hydrothermal Treatment of Penicillin: Kinetic, Pathway, and Antibacterial Activity.	Zhang Q, Niu D, Ni S, An W, Li C, Huhe T, Wang C, Jiang X, Ren J.	Int J Environ Res Public Health	10.3390/ijerph191710701	2022
Biotechnology	Efficacy of Indigenous Bacteria in the Biodegradation of Hydrocarbons Isolated from Agricultural Soils in Huamachuco, Peru.	Quinones-Cerna C, Castaneda-Aspajo A, Tirado-Gutierrez M, Salirrosas-Fernandez D, Rodriguez-Soto JC, Cruz-Monzon JA, Hurtado-Butron F, Ugarte-Lopez W, Gutierrez-Araujo M, Quezada-Alvarez MA, Galvez-Rivera JA, Esparza-Mantilla M.	Microorganisms	10.3390/microorganisms12091896	2024
	Smoothie Drinks: Possible Source of Resistant and Biofilm-Forming Microorganisms.	Silha D, Syrova P, Syrova L, Janeckova J.	Foods	10.3390/foods11244039	2022
	In vitro and in silico evaluation of phytocompounds from Leucaena leucocephala and Entada phaseoloides targeting DNA gyrase, topoisomerase II, AKT1.	Khiangte L, Sailo H, Ralte L, Lalnunmawia F, Senthilkumar N, Singh YT.	Sci Rep	10.1038/s41598-025-07792-y	2025
Metabolism	Petroleum-Tolerant Rhizospheric Bacteria: Isolation, Characterization and Bioremediation Potential.	Viesser JA, Sugai-Guerios MH, Malucelli LC, Pincerati MR, Karp SG, Maranho LT.	Sci Rep	10.1038/s41598-020-59029-9	2020
	Regulatory Characteristics of Bacillus pumilus Protease Promoters.	Toymentseva AA, Mascher T, Sharipova MR.	Curr Microbiol	10.1007/s00284-017-1212-3	2017
Enzymology	Features of Gene Expression of Bacillus pumilus Metalloendopeptidase.	Rudakova NL, Sabirova AR, Balaban NP, Tikhonova AO, Sharipova MR.	Biochemistry (Mosc)	10.1134/s0006297916080095	2016
Biotechnology	Enhancing spontaneous biosurfactant production through water steeping of olive mill waste.	Russo-Martinez N, Vecino X, Moldes AB, Cruz JM.	Sci Rep	10.1038/s41598-025-92040-6	2025
	Development and Transfer of Microbial Agrobiotechnologies in Contrasting Agrosystems: Experience of Kazakhstan and China.	Nygymetova AM, Sadvakasova AK, Zaletova DE, Kossalbayev BD, Bauenova MO, Wang J, Huang Z, Sarsekeyeva FK, Kirbayeva DK, Allakhverdiev SI.	Plants (Basel)	10.3390/plants14142208	2025
	Spatio-temporal variations of airborne bacteria from the municipal wastewater treatment plant: a case study in Ahvaz, Iran.	Talepour N, Hassanvand MS, Abbasi-Montazeri E, Latifi SM, Jaafarzadeh Haghighi Fard N.	J Environ Health Sci Eng	10.1007/s40201-020-00470-3	2020
Enzymology	Characteristics and complete genome analysis of a novel jumbo phage infecting pathogenic Bacillus pumilus causing ginger rhizome rot disease.	Yuan Y, Gao M.	Arch Virol	10.1007/s00705-016-3053-y	2016
Enzymology	In-Vitro Refolding and Characterization of Recombinant Laccase (CotA) From Bacillus pumilus MK001 and Its Potential for Phenolics Degradation.	Kumar S, Jain KK, Rani S, Bhardwaj KN, Goel M, Kuhad RC.	Mol Biotechnol	10.1007/s12033-016-9978-2	2016
	Plant growth promoting bacteria (PGPB)-induced plant adaptations to stresses: an updated review.	Fanai A, Bohia B, Lalremruati F, Lalhriatpuii N, Lalrokimi, Lalmuanpuii R, Singh PK, Zothanpuia.	PeerJ	10.7717/peerj.17882	2024
	Characterizing the Soil Microbial Community Associated with the Fungal Pathogen Coccidioides immitis.	Radosevich M, Head J, Couper L, Weaver A, Camponuri S, Montoya L, Taylor JW, Remais J.	J Fungi (Basel)	10.3390/jof11040309	2025
	A New Phenolic Acid Decarboxylase from the Brown-Rot Fungus Neolentinus lepideus Natively Decarboxylates Biosourced Sinapic Acid into Canolol, a Bioactive Phenolic Compound.	Odinot E, Bisotto-Mignot A, Frezouls T, Bissaro B, Navarro D, Record E, Cadoret F, Doan A, Chevret D, Fine F, Lomascolo A.	Bioengineering (Basel)	10.3390/bioengineering11020181	2024
	Screening of organic substrates for the development of effective biofungicides to manage cashew fusarium wilt disease.	Lilai SA, Hussein J, Kapinga FA, Nene WA, Temu SG, Tibuhwa DD.	J Biol Methods	10.14440/jbm.2025.0089	2025
	Utility of Plant Growth-Promoting Rhizobacteria for Sustainable Production of Bermudagrass Forage.	Sullins KN, Dillard SL, Held DW, Carroll EP.	Microorganisms	10.3390/microorganisms11040863	2023
	Comparative antibacterial effects of cellulose nanofiber, chitosan nanofiber, chitosan/cellulose combination and chitosan alone against bacterial contamination of Iranian banknotes.	Zarayneh S, Sepahi AA, Jonoobi M, Rasouli H.	Int J Biol Macromol	10.1016/j.ijbiomac.2018.06.160	2018
	Effect of Lactiplantibacillus and sea buckthorn pomace on the fermentation quality and microbial community of paper mulberry silage.	Peng S, Xie L, Cheng Y, Wang Q, Feng L, Li Y, Lei Y, Sun Y.	Front Plant Sci	10.3389/fpls.2024.1412759	2024
	Effects of fermentation on proximate composition, mineral profile and antinutrients of tamarind (Tamarindus indica L.) seed in the production of daddawa-type condiment	Olagunju OF, Ezekiel OO, Ogunshe AO, Oyeyinka SA, Ijabadeniyi OA.	Lebensm Wiss Technol	10.1016/j.lwt.2017.12.064	2018
Enzymology	Production, optimization and characterization of esterase isolated from a new endophytic Trichoderma afroharzianum strain AUMC 16,433 and its applications in dye decolorization.	Mahmoud YA, Alamin NS, Mohamed TM, El-Zawawy NA, Salem MM.	Microb Cell Fact	10.1186/s12934-025-02832-8	2025
	Alkaline active cyanide dihydratase of Flavobacterium indicum MTCC 6936: Growth optimization, purification, characterization and in silico analysis.	Kumar V, Kumar V, Bhalla TC.	Int J Biol Macromol	10.1016/j.ijbiomac.2018.05.075	2018
	Metagenomic analysis reveals Bacillus cereus OTU8977 as a potential probiotic in promoting walnut growth.	Wang C, Song W, Li C, Cao Y, Li X, Zhao J, Yang F, Yu H, Liang Q, Yang KQ, Liu JN, Fang H.	BMC Plant Biol	10.1186/s12870-025-06812-3	2025
Metabolism	Residue Y70 of the Nitrilase Cyanide Dihydratase from Bacillus pumilus Is Critical for Formation and Activity of the Spiral Oligomer.	Park JM, Ponder CM, Sewell BT, Benedik MJ.	J Microbiol Biotechnol	10.4014/jmb.1606.06035	2016
	Efficacy of P. oligandrum affected by its association with bacterial BCAs and rootstock effect in controlling grapevine trunk diseases	Daraignes L, Gerbore J, Yacoub A, Dubois L, Romand C, Zekri O, Roudet J, Chambon P, Fermaud M.	Biol Control	10.1016/j.biocontrol.2018.01.008	2018
	Bridging Molecular Insights and Agronomic Innovations: Cutting-Edge Strategies for Overcoming Boron Deficiency in Sustainable Rapeseed Cultivation.	Riaz M, Rafiq M, Nawaz HH, Miao W.	Plants (Basel)	10.3390/plants14070995	2025
Metabolism	Improving the catalytic efficiency of Bacillus pumilus CotA-laccase by site-directed mutagenesis.	Chen Y, Luo Q, Zhou W, Xie Z, Cai YJ, Liao XR, Guan ZB.	Appl Microbiol Biotechnol	10.1007/s00253-016-7962-1	2017
	Determination of Biodegradation Potential of Aspergillus niger, Candida albicans, and Acremonium sclerotigenum on Polyethylene, Polyethylene Terephthalate, and Polystyrene Microplastics.	Safdar A, Ismail F, Iftikhar H, Majid Khokhar A, Javed A, Imran M, Safdar B.	Int J Microbiol	10.1155/2024/7682762	2024
Enzymology	Purification and Characterization of a Novel Fibrinolytic Enzyme from Marine Bacterium Bacillus sp. S-3685 Isolated from the South China Sea.	Ma Z, Elango J, Hao J, Wu W.	Mar Drugs	10.3390/md22060267	2024
Metabolism	Biodegradation and Metabolism of Tetrabromobisphenol A (TBBPA) in the Bioaugmented Activated Sludge Batch Bioreactor System by Heterotrophic and Nitrifying Bacteria.	Islam MS, Zhou H, Zytner RG.	Water Environ Res	10.2175/106143017x15131012152753	2018
	Complete Genome Sequence of the Bacillus pumilus Phage Leo2.	Badran S, Morales N, Schick P, Jacoby B, Villella W, Lorenz T.	Genome Announc	10.1128/genomea.00066-18	2018
	Evaluation of the antimicrobial effect of a far-uv radiation lamp in a real-life environment.	Bansaghi S, Klein J.	Infect Prev Pract	10.1016/j.infpip.2024.100390	2024
	Toxigenic effects of sponges and benthic diatoms on marine invertebrates and their possible biotechnological applications.	Federico S, Siciliano A, Esposito R, Spampinato M, Ruocco N, Nuzzo G, Cutignano A, Giovine M, Pozzolini M, Bertolino M, Guida M, Costantini M, Zupo V.	Sci Rep	10.1038/s41598-024-74100-5	2024
	Plasmid pPNptGreen Expression of Green Fluorescent Protein in Pseudomonas chlororaphis Strain S1Bt23 Abrogates Biocontrol Activity Against Pythium ultimum.	Akuma M, Chi SI, Xu R, Thapa I, Blackwell B, Tambong JT.	Environ Microbiol Rep	10.1111/1758-2229.70083	2025
	Cryo-EM Structures of Two Bacteriophage Portal Proteins Provide Insights for Antimicrobial Phage Engineering.	Javed A, Villanueva H, Shataer S, Vasciaveo S, Savva R, Orlova EV.	Viruses	10.3390/v13122532	2021
	Cloning, Overexpression, and Characterization of a Thermostable, Organic Solvent-Tolerant Laccase from Bacillus pumilus ARA and Its Application to Dye Decolorization.	Jiang YP, Cai JL, Pei JJ, Li Q, Zhao LG.	ACS Omega	10.1021/acsomega.1c00370	2021
Genetics	Mechanistic insights from metagenomics into the early-stage quality improvement of licorice under partial replacement of chemical by organic fertilizers.	Xiao J, Gao P, Lai K, Binbin Y, Wang S, Zhao Y, Wan X, Lyu C, Kang C, Guo L, Zhang Y.	Front Plant Sci	10.3389/fpls.2025.1613771	2025
Genetics	Genome Mining and Comparative Genome Analysis Revealed Niche-Specific Genome Expansion in Antibacterial Bacillus pumilus Strain SF-4.	Iqbal S, Vollmers J, Janjua HA.	Genes (Basel)	10.3390/genes12071060	2021
	Ultrasonics as a tool for development of pine-needle extract loaded bee wax edible packaging for value addition of Himalayan cheese.	Joseph-Leenose-Helen J, Noor N, Mushtaq M, Gani A.	Ultrason Sonochem	10.1016/j.ultsonch.2022.105914	2022
	Optimization of the Fermentation Conditions of Metarhizium robertsii and Its Biological Control of Wolfberry Root Rot Disease.	He J, Zhang X, Wang Q, Li N, Ding D, Wang B.	Microorganisms	10.3390/microorganisms11102380	2023
	Bacillus pumilus and Bacillus subtilis Promote Early Maturation of Cecal Microbiota in Broiler Chickens.	Bilal M, Achard C, Barbe F, Chevaux E, Ronholm J, Zhao X.	Microorganisms	10.3390/microorganisms9091899	2021
	Draft Genome Sequence of Bacillus pumilus SCAL1, an Endophytic Heat-Tolerant Plant Growth-Promoting Bacterium.	Mukhtar T, Afridi MS, McArthur R, Van Hamme JD, Rineau F, Mahmood T, Amna, Sumaira, Zahid M, Salam A, Khan MN, Ali F, Mehmood S, Bangash N, Chaudhary HJ.	Genome Announc	10.1128/genomea.00306-18	2018
	Characterization of Feruloyl Esterase from Klebsiella oxytoca Z28 and Its Application in the Release of Ferulic Acid from De-Starching Wheat Bran.	Zhang Y, Feng Z, Xiang H, Zhang X, Yang L.	Microorganisms	10.3390/microorganisms11040989	2023
	Production of Pumilarin and a Novel Circular Bacteriocin, Altitudin A, by Bacillus altitudinis ECC22, a Soil-Derived Bacteriocin Producer.	Lafuente I, Sevillano E, Pena N, Cuartero A, Hernandez PE, Cintas LM, Munoz-Atienza E, Borrero J.	Int J Mol Sci	10.3390/ijms25042020	2024
	Isolation, Characterization, and Identification Candidate of Probiotic Bacteria Isolated from Wadi Papuyu (Anabas testudineus Bloch.) a Fermented Fish Product from Central Kalimantan, Indonesia.	Soemarie YB, Milanda T, Barliana MI.	Int J Food Sci	10.1155/2022/4241531	2022
Genetics	Whole Genome Shotgun Sequencing-Based Insights into the Benzene and Xylene Degrading Potentials of Bacteria.	Muccee F, Mohiuddin F, Shahab A, Almajwal A, Afsar T, Amor H, Razak S.	Pol J Microbiol	10.33073/pjm-2025-020	2025
	Alginate-Based Hydrogel as Delivery System for Therapeutic Bacterial RNase.	Bogdanova LR, Zelenikhin PV, Makarova AO, Zueva OS, Salnikov VV, Zuev YF, Ilinskaya ON.	Polymers (Basel)	10.3390/polym14122461	2022
Enzymology	Evaluation of the growth-inducing efficacy of various Bacillus species on the salt-stressed tomato (Lycopersicon esculentum Mill.).	Patani A, Prajapati D, Ali D, Kalasariya H, Yadav VK, Tank J, Bagatharia S, Joshi M, Patel A.	Front Plant Sci	10.3389/fpls.2023.1168155	2023
	Canalisation and plasticity on the developmental manifold of Caenorhabditis elegans.	Jordan DJ, Miska EA.	Mol Syst Biol	10.15252/msb.202311835	2023
	Unveiling the Antibiotic Susceptibility and Antimicrobial Potential of Bacteria from Human Breast Milk of Pakistani Women: An Exploratory Study.	Saeed A, Ali H, Yasmin A, Baig M, Ullah A, Kazmi A, Ahmed MA, Albadrani GM, El-Demerdash FM, Bibi M, Abdel-Daim MM, Ali I, Hussain S.	Biomed Res Int	10.1155/2023/6399699	2023
	Exploring the Transient Microbe Population on Citrus Butterfly Wings.	Kamala Jayanthi PD, Vyas M.	Microbiol Spectr	10.1128/spectrum.02055-21	2022
	Metabolic pathway analysis of the biodegradation of cellulose by Bacillus velezensis.	Yin X, Bi Y, Niu J, Shao W, Liang G, Lin W, Xu C.	Heliyon	10.1016/j.heliyon.2024.e38375	2024
	Single or Combined Supplementation of Rhodotorula Yeast Culture and Bacillus Subtilis Enhances Intestinal Barrier Function in Yellow-Feathered Broilers.	Su X, Wang K, Liu Y, Lu X, Chen M, Dang J, Zhang G, Yang G, Gao A, Xu Y.	Vet Sci	10.3390/vetsci12060558	2025
	Bacillus velezensis GH1-13 enhances drought tolerance in rice by reducing the accumulation of reactive oxygen species.	Park D, Jang J, Seo DH, Kim Y, Jang G.	Front Plant Sci	10.3389/fpls.2024.1432494	2024
	Cultivation and sequencing of microbiota members unveil the functional potential of yak gut microbiota.	Dai M, Zhao F, Shi X, Tian C, Lin Y, Bai L, Li T, Jin X, Xiao L, Kristiansen K, Li X, Zhang Z.	mSystems	10.1128/msystems.00367-25	2025
Pathogenicity	Insights into the Biotic Factors Shaping Ectomycorrhizal Associations.	El Amrani B.	Biology (Basel)	10.3390/biology13121044	2024
Metabolism	Different inflammatory responses of bovine oviductal epithelial cells in vitro to bacterial species with distinct pathogenicity characteristics and passage number.	Danesh Mesgaran S, Gartner MA, Wagener K, Drillich M, Ehling-Schulz M, Einspanier R, Gabler C.	Theriogenology	10.1016/j.theriogenology.2017.10.005	2018
	Bacillus velezensis CL197: a zearalenone detoxifying strain isolated from wheat with potential to be used in animal production.	Orso PB, Evangelista AG, de Melo Nazareth T, Luz C, Bordin K, Meca G, Luciano FB.	Vet Res Commun	10.1007/s11259-024-10552-4	2024
	Transfer of radiocesium from rhizosphere soil to four cruciferous vegetables in association with a Bacillus pumilus strain and root exudation.	Aung HP, Mensah AD, Aye YS, Djedidi S, Oikawa Y, Yokoyama T, Suzuki S, Dorothea Bellingrath-Kimura S.	J Environ Radioact	10.1016/j.jenvrad.2016.07.006	2016
	Bioaugmentation potential of inoculum derived from anaerobic digestion feedstock for enhanced methane production using water hyacinth.	Obi LU, Roopnarain A, Tekere M, Adeleke RA.	World J Microbiol Biotechnol	10.1007/s11274-023-03600-9	2023
Transcriptome	Genomic and Transcriptomic Analysis of Mutant Bacillus subtilis with Enhanced Nattokinase Production via ARTP Mutagenesis.	Guo L, Chen Y, He Z, Wang Z, Chen Q, Chen J, Oz F, Xu Z, Zeng M.	Foods	10.3390/foods14050898	2025
	Silver(I) complexes with phenolic Schiff bases: Synthesis, antibacterial evaluation and interaction with biomolecules.	Loginova N, Gvozdev M, Osipovich N, Khodosovskaya A, Koval'chuk-Rabchinskaya T, Ksendzova G, Kotsikau D, Evtushenkov A.	ADMET DMPK	10.5599/admet.1167	2022
Metabolism	Display of B. pumilus chitinase on the surface of B. subtilis spore as a potential biopesticide.	Rostami A, Hinc K, Goshadrou F, Shali A, Bayat M, Hassanzadeh M, Amanlou M, Eslahi N, Ahmadian G.	Pestic Biochem Physiol	10.1016/j.pestbp.2017.05.008	2017
	The inhibitory effects of metabolites from Bacillus pumilus on potato virus Y and the induction of early response genes in Nicotiana tabacum.	Shen S, Li W.	AMB Express	10.1186/s13568-020-01089-1	2020
	Ecology and Pathogenicity for Honey Bee Brood of Recently Described Paenibacillus melissococcoides and Comparison With Paenibacillus dendritiformis, Paenibacillus thiaminolyticus.	Ory F, Dainat B, Wurgler O, Wenger F, Roetschi A, Braillard L, Charriere JD, Dietemann V.	Environ Microbiol Rep	10.1111/1758-2229.70089	2025
	Rapid Biodegradation Assessment of Biomass Plastics Using Closed Recirculating Aquaculture Systems: A Novel Approach for Environmental Sustainability.	Kotcharoen W, Wada N, Kakikawa M, Takiguchi N, Takahashi Y, Takahashi K, Takeuchi Y.	Mar Biotechnol (NY)	10.1007/s10126-025-10436-x	2025
Metabolism	Increasing the catalytic activity of Bilirubin oxidase from Bacillus pumilus: Importance of host strain and chaperones proteins.	Gounel S, Rouhana J, Stines-Chaumeil C, Cadet M, Mano N.	J Biotechnol	10.1016/j.jbiotec.2016.04.035	2016
	Identification of phenazine-1-carboxylic acid gene (phc CD) from Bacillus pumilus MTCC7615 and its role in antagonism against Rhizoctonia solani.	Padaria JC, Tarafdar A, Raipuria R, Lone SA, Gahlot P, Shakil NA, Kumar J.	J Basic Microbiol	10.1002/jobm.201500574	2016
	Molecular identification and nanoremediation of microbial contaminants in algal systems using untreated wastewater.	Limayem A, Gonzalez F, Micciche A, Haller E, Nayak B, Mohapatra S.	J Environ Sci Health B	10.1080/03601234.2016.1211912	2016
	Whole-genome sequencing and secondary metabolite exploration of the novel Bacillus velezensis BN with broad-spectrum antagonistic activity against fungal plant pathogens.	Zheng Y, Liu T, Wang Z, Wang X, Wang H, Li Y, Zheng W, Wei S, Leng Y, Li J, Yang Y, Liu Y, Li Z, Wang Q, Tian Y.	Front Microbiol	10.3389/fmicb.2024.1498653	2024
	Gut symbiotic bacteria enhance reproduction in Spodoptera frugiperda (J.E. Smith) by regulating juvenile hormone III and 20-hydroxyecdysone pathways.	Chu B, Ge S, He W, Sun X, Ma J, Yang X, Lv C, Xu P, Zhao X, Wu K.	Microbiome	10.1186/s40168-025-02121-x	2025
	Influence of autochthonous Lactiplantibacillus plantarum strains on microbial safety and bioactive compounds in a fermented quinoa-based beverage as a non-dairy alternative.	Canaviri-Paz P, Gondo TF, Kjellstrom A, Mandoga T, Sithole J, Oscarsson E, Sandahl M, Hakansson A.	Food Chem X	10.1016/j.fochx.2025.102294	2025
	Molecular Mechanisms of the Biological Control of Pine Wilt Disease Using Microorganisms.	Su X, Luo Y, Hu J, Xia Y, Liu M, Li Y, Wang H.	Microorganisms	10.3390/microorganisms13061215	2025
	Novel probiotic preparation with in vivo gluten-degrading activity and potential modulatory effects on the gut microbiota.	Nikoloudaki O, Celano G, Polo A, Cappello C, Granehall L, Costantini A, Vacca M, Speckmann B, Di Cagno R, Francavilla R, De Angelis M, Gobbetti M.	Microbiol Spectr	10.1128/spectrum.03524-23	2024
	The degradation of textile industry dyes using the effective bacterial consortium.	Afrin S, Shuvo HR, Sultana B, Islam F, Rus'd AA, Begum S, Hossain MN.	Heliyon	10.1016/j.heliyon.2021.e08102	2021
Metabolism	Increased mRNA expression of selected pro-inflammatory factors in inflamed bovine endometrium in vivo as well as in endometrial epithelial cells exposed to Bacillus pumilus in vitro.	Gartner MA, Peter S, Jung M, Drillich M, Einspanier R, Gabler C.	Reprod Fertil Dev	10.1071/rd14219	2016
Metabolism	Isolated Phosphate-Solubilizing Soil Bacteria Promotes In vitro Growth of Solanum tuberosum L.	YaNez-Ocampo G, Mora-Herrera ME, Wong-Villarreal A, DE LA Paz-Osorio DM, DE LA Portilla-LOpez N, Lugo J, Vaca-PaulIn R, Del Aguila P.	Pol J Microbiol	10.33073/pjm-2020-039	2020
	In vivo functional expression of an extracellular Ca2+-independent Bacillus pumilus lipase in Bacillus subtilis WB800N	Ma J, Ma Y, Wei W, Wei Dz.	Ann Microbiol	10.1007/s13213-015-1035-z	2015
	Clinical phenotyping of spondylodiscitis and isolated spinal epidural empyema: a 20-year experience and cohort study.	Hijazi MM, Siepmann T, El-Battrawy I, Glatte P, Eyupoglu I, Schackert G, Juratli TA, Podlesek D.	Front Surg	10.3389/fsurg.2023.1200432	2023
	A Highly Active Keratinase from Bacillus sp. FJ-3-16 for Sustainable Feather Waste Valorization and Eco-Friendly Industrial Applications.	Bian F, He H, Chen G, Yue S, Zhu Y, Zhang X, Xie BB.	Biomolecules	10.3390/biom15101389	2025
	Effect of probiotics administration at different levels on the productive parameters of guinea pigs for fattening (Cavia porcellus).	Carcelen F, Lopez M, Martin FS, Ara M, Bezada S, Ruiz-Garcia L, Sandoval-Monzon R, Lopez S, Guevara J.	Open Vet J	10.5455/ovj.2021.v11.i2.6	2021
Genetics	Genomic, Antimicrobial, and Aphicidal Traits of Bacillus velezensis ATR2, and Its Biocontrol Potential against Ginger Rhizome Rot Disease Caused by Bacillus pumilus.	Liang L, Fu Y, Deng S, Wu Y, Gao M.	Microorganisms	10.3390/microorganisms10010063	2021
	Influence of medium modifications (optimization) on high nematicidal activity of the fermentation broth of Clostridium beijerinckii.	Liu S, Zhang K, Yu Y, Lian X, Jiang L, Meng F, Wang Y, Zhu X, Duan Y.	Front Bioeng Biotechnol	10.3389/fbioe.2023.1283112	2023
	Exploring propolis-derived compounds as quorum sensing inhibitors for Candida albicans: a molecular docking and dynamics simulations study.	Chraa F, EL Meskini D, Kandoussi I, Bouyahya A, Ming LC, Chew J, Moshawih S, Jaoudi RE, Ouadghiri M, Aanniz T.	Sci Rep	10.1038/s41598-025-18001-1	2025
	Utility of acidic xylanase of Bacillus subtilis subsp. subtilis JJBS250 in improving the nutritional value of poultry feed.	Alokika, Singh D, Singh B.	3 Biotech	10.1007/s13205-018-1526-2	2018
Transcriptome	Contrasting Immunomodulatory Effects of Probiotic and Pathogenic Bacteria on Eastern Oyster, Crassostrea Virginica, Larvae.	Modak TH, Gomez-Chiarri M.	Vaccines (Basel)	10.3390/vaccines8040588	2020
Enzymology	Single-site substitutions improve cold activity and increase thermostability of the dehairing alkaline protease (DHAP).	Zhao HY, Wu LY, Liu G, Feng H.	Biosci Biotechnol Biochem	10.1080/09168451.2016.1230005	2016
Metabolism	Purification, characterization, and functional groups of an extracellular aflatoxin M₁ -detoxifizyme from Bacillus pumilus E-1-1-1.	Zhang XJ, Gao J, Han J, Wang XH, Sang YX.	Microbiologyopen	10.1002/mbo3.868	2019
	Typeability of MALDI-TOF assay for identification of non-aureus staphylococci associated with bovine intramammary infections and teat apex colonization.	Mahmmod YS, Nonnemann B, Svennesen L, Pedersen K, Klaas IC.	J Dairy Sci	10.3168/jds.2018-14579	2018
	Pathogen Identification, Antagonistic Microbe Screening, and Biocontrol Strategies for Aconitum carmichaelii Root Rot.	Dai X, He Y, Su Y, Mo H, Li W, Li W, Zi S, Liu L, Di Y.	Microorganisms	10.3390/microorganisms13092202	2025
Enzymology	[Characterization of beta-1, 4-mannanase from Bacillus pumilus and heterologous expression in Lactobacillus casei].	Zou Y, Lin J, Bu X, Jiang L, Chen Z, Ge X.	Wei Sheng Wu Xue Bao		2015
Metabolism	Evaluation of Pterin, a Promising Drug Candidate from Cyanide Degrading Bacteria.	Mahendran R, Thandeeswaran M, Kiran G, Arulkumar M, Ayub Nawaz KA, Jabastin J, Janani B, Anto Thomas T, Angayarkanni J.	Curr Microbiol	10.1007/s00284-018-1433-0	2018
	The influence of probiotic administration on selected leukocyte subpopulations and the serum amyloid A concentration in the peripheral blood of dairy cows during different lactation periods.	Brodzki P, Marczuk J, Gorzkos H, Lisiecka U, Szczubial M, Brodzki A, Dabrowski R, Krakowski L, Glodkowska K, Brodzki N.	J Vet Res	10.2478/jvetres-2024-0057	2024
	Growth and (137)Cs uptake and accumulation among 56 Japanese cultivars of Brassica rapa, Brassica juncea and Brassica napus grown in a contaminated field in Fukushima: Effect of inoculation with a Bacillus pumilus strain.	Djedidi S, Kojima K, Ohkama-Ohtsu N, Bellingrath-Kimura SD, Yokoyama T.	J Environ Radioact	10.1016/j.jenvrad.2016.02.024	2016
	A new coumarin from stem bark of Calophyllum wallichianum.	Tee KH, Ee GCL, Ismail IS, Karunakaran T, Teh SS, Jong VYM, Mohd Nor SM.	Nat Prod Res	10.1080/14786419.2018.1428588	2018
	ESKAPEE Pathogen Biofilm Control on Surfaces with Probiotic Lactobacillaceae and Bacillus species.	Neidhofer C, Rathore K, Parcina M, Sieber MA.	Antibiotics (Basel)	10.3390/antibiotics12050871	2023
Enzymology	Isolation, identification, and optimal cultivation of a marine bacterium antagonistic to Magnaporthe grisea.	Zhang WJ, Guo P, Liu M, Yang BL, Wang JH, Jiang J.	Genet Mol Res	10.4238/gmr.15028646	2016
	Molecular and metabolic characterization of petroleum hydrocarbons degrading Bacillus cereus	Hussain N, Muccee F, Hammad M, Mohiuddin F, Bunny S, Shahab A.	Pol J Microbiol
	Biotransformation of Thiochroman Derivatives Using Marine-Derived Fungi: Isolation, Characterization, and Antimicrobial Activity.	Virues-Segovia JR, Pinedo-Rivilla C, Munoz-Mira S, Ansino M, Gonzalez-Rodriguez VE, Ezzanad A, Galan-Sanchez F, Duran-Patron R, Aleu J.	Int J Mol Sci	10.3390/ijms26030908	2025
	Identification of Metabolites with Antibacterial Activities by Analyzing the FTIR Spectra of Microalgae.	Sukhikh S, Prosekov A, Ivanova S, Maslennikov P, Andreeva A, Budenkova E, Kashirskikh E, Tcibulnikova A, Zemliakova E, Samusev I, Babich O.	Life (Basel)	10.3390/life12091395	2022
	The gut-brain-axis: A positive relationship between gut microbial dysbiosis and glioblastoma brain tumour.	Ishaq HM, Yasin R, Mohammad IS, Fan Y, Li H, Shahzad M, Xu J.	Heliyon	10.1016/j.heliyon.2024.e30494	2024
	[A sepsis case caused by a rare opportunistic pathogen: Bacillus pumilus].	Borsa BA, Aldag ME, Tunali B, Dinc U, Gungordu Dalar Z, Ozalp VC.	Mikrobiyol Bul	10.5578/mb.27575	2016
Pathogenicity	Proteomic analysis unveils host-parasite interactions in Aedes togoi infected with Dirofilaria immitis and Brugia pahangi.	Vinnie-Siow WY, Low VL, Chai HC, Lim YA, Tan TK.	PLoS One	10.1371/journal.pone.0326693	2025
	Dynamically induced spatial segregation in multispecies bacterial bioconvection.	Gallardo-Navarro O, Arbel-Goren R, August E, Olmedo-Alvarez G, Stavans J.	Nat Commun	10.1038/s41467-025-56244-8	2025
Pathogenicity	Structural characterization of Bacillus licheniformis Dahb1 exopolysaccharide-antimicrobial potential and larvicidal activity on malaria and Zika virus mosquito vectors.	Abinaya M, Vaseeharan B, Divya M, Vijayakumar S, Govindarajan M, Alharbi NS, Khaled JM, Al-Anbr MN, Benelli G.	Environ Sci Pollut Res Int	10.1007/s11356-018-2002-6	2018
	Production and identification of two antifungal terpenoids from the Posidonia oceanica epiphytic Ascomycota Mariannaea humicola IG100.	Botta L, Saladino R, Barghini P, Fenice M, Pasqualetti M.	Microb Cell Fact	10.1186/s12934-020-01445-7	2020
	Production and partial purification of thermostable bacteriocins from Bacillus pumilus ZED17 and DFAR8 strains with antifungal activity.	Dehghanifar S, Keyhanfar M, Emtiazi G.	Mol Biol Res Commun	10.22099/mbrc.2019.31563.1367	2019
	Analysis of the efficacy of MALDI-TOF MS technology in identifying microorganisms in cancer patients and oncology hospital environment.	Czeszewska-Rosiak G, Adamczyk I, Ludwiczak A, Fijalkowski P, Fijalkowski P, Twaruzek M, Zloch M, Gabrys D, Mista W, Tretyn A, Pomastowski PP.	Heliyon	10.1016/j.heliyon.2025.e42015	2025
Pathogenicity	Synthesis and characterization of silver nanoparticles using Gelidium amansii and its antimicrobial property against various pathogenic bacteria.	Pugazhendhi A, Prabakar D, Jacob JM, Karuppusamy I, Saratale RG.	Microb Pathog	10.1016/j.micpath.2017.11.013	2018
Metabolism	An in-depth characterization of the entomopathogenic strain Bacillus pumilus 15.1 reveals that it produces inclusion bodies similar to the parasporal crystals of Bacillus thuringiensis.	Garcia-Ramon DC, Molina CA, Osuna A, Vilchez S.	Appl Microbiol Biotechnol	10.1007/s00253-015-7259-9	2016
	Evaluation of the efficacy of the antimicrobial peptide HJH-3 in chickens infected with Salmonella Pullorum.	Xu Y, Wang Q, Dong M, Song H, Hang B, Sun Y, Zhang H, Hu J.	Front Microbiol	10.3389/fmicb.2023.1102789	2023
Enzymology	Molecular dynamics simulation studies suggests unconventional roles of non-secretary laccases from enteropathogenic gut bacteria and Cryptococcus neoformans serotype D.	Sharma KK, Singh D, Rawat S.	Comput Biol Chem	10.1016/j.compbiolchem.2018.01.010	2018
Enzymology	Purification and partial characterization of serine-metallokeratinase from a newly isolated Bacillus pumilus NRC21.	Tork SE, Shahein YE, El-Hakim AE, Abdel-Aty AM, Aly MM.	Int J Biol Macromol	10.1016/j.ijbiomac.2016.01.060	2016
	Aerobic Vaginal Microflora in Gestational and Non-Gestational Bitches (Canis lupus familiaris).	Pop RA, Vasiu I, Meroni G, Martino PA, Dabrowski R, Tvarijonaviciute A, Fit IN.	Animals (Basel)	10.3390/ani14101501	2024
Biotechnology	Nanoparticles in association with antimicrobial peptides (NanoAMPs) as a promising combination for agriculture development.	Maximiano MR, Rios TB, Campos ML, Prado GS, Dias SC, Franco OL.	Front Mol Biosci	10.3389/fmolb.2022.890654	2022
	Selecting Bacterial Antagonists for Cucurbit Downy Mildew and Developing an Effective Application Method.	Zheng L, Gu C, Cao J, Li SM, Wang G, Luo YM, Guo JH.	Plant Dis	10.1094/pdis-01-17-0058-re	2018
	A strategy for mitigating avian colibacillosis disease using plant growth promoting rhizobacteria and green synthesized zinc oxide nanoparticles.	Masood K, Yasmin H, Batool S, Ilyas N, Nosheen A, Naz R, Khan N, Nadeem Hassan M, Aldhahrani A, Althobaiti F.	Saudi J Biol Sci	10.1016/j.sjbs.2021.06.100	2021
	Complete Genome Sequence of Bacillus pumilus PDSLzg-1, a Hydrocarbon-Degrading Bacterium Isolated from Oil-Contaminated Soil in China.	Hao K, Li H, Li F, Guo P.	Genome Announc	10.1128/genomea.01079-16	2016
	Applicability of UV resistant Bacillus pumilus endospores as a human adenovirus surrogate for evaluating the effectiveness of virus inactivation in low-pressure UV treatment systems.	Boczek LA, Rhodes ER, Cashdollar JL, Ryu J, Popovici J, Hoelle JM, Sivaganesan M, Hayes SL, Rodgers MR, Ryu H.	J Microbiol Methods	10.1016/j.mimet.2016.01.012	2016
Enzymology	Effects of woody forages on biodiversity and bioactivity of aerobic culturable gut bacteria of tilapia (Oreochromis niloticus).	Wu F, Chen B, Liu S, Xia X, Gao L, Zhang X, Pan Q.	PLoS One	10.1371/journal.pone.0235560	2020
	Draft Genome Sequence of Bacillus pumilus Strain GM3FR, an Endophyte Isolated from Aerial Plant Tissues of Festuca rubra L.	Hollensteiner J, Poehlein A, Daniel R, Liesegang H, Vidal S, Wemheuer F.	Genome Announc	10.1128/genomea.00085-17	2017
	Generation of 4-vinylguaiacol through a novel high-affinity ferulic acid decarboxylase to obtain smoke flavours without carcinogenic contaminants.	Detering T, Mundry K, Berger RG.	PLoS One	10.1371/journal.pone.0244290	2020
	Antibiofilm efficacy of biosynthesized silver nanoparticles against endodontic-periodontal pathogens: An in vitro study.	Halkai KR, Halkai R, Mudda JA, Shivanna V, Rathod V.	J Conserv Dent	10.4103/jcd.jcd_203_18	2018
	Study of the radiation effect of 99Mo/99mTc generator on Bacillus subtilis and Bacillus pumilus species.	Fukumori NTO, Endo EMM, Felgueiras CF, Matsuda MMN, Osso Junior JA.	Appl Radiat Isot	10.1016/j.apradiso.2015.09.007	2016
Pathogenicity	The Curious Case of Achromobacter eurydice, a Gram-Variable Pleomorphic Bacterium Associated with European Foulbrood Disease in Honeybees.	Erler S, Lewkowski O, Poehlein A, Forsgren E.	Microb Ecol	10.1007/s00248-017-1007-x	2018
Phylogeny	Algal-bacterial bioremediation of cyanide-containing wastewater in a continuous stirred photobioreactor.	AbdelMageed MF, ElRakaiby MT.	World J Microbiol Biotechnol	10.1007/s11274-024-04230-5	2025
Biotechnology	Evaluation of Plant Growth Promoting Bacteria Strains on Growth, Yield and Quality of Industrial Tomato.	Katsenios N, Andreou V, Sparangis P, Djordjevic N, Giannoglou M, Chanioti S, Stergiou P, Xanthou MZ, Kakabouki I, Vlachakis D, Djordjevic S, Katsaros G, Efthimiadou A.	Microorganisms	10.3390/microorganisms9102099	2021
	Green synthesis of zinc oxide nanostructures and investigation of their photocatalytic and bactericidal applications.	Kahsay MH, Tadesse A, RamaDevi D, Belachew N, Basavaiah K.	RSC Adv	10.1039/c9ra07630a	2019
	Plant-Microbe Interactions under the Extreme Habitats and Their Potential Applications.	Tiwari P, Bose SK, Park KI, Dufosse L, Fouillaud M.	Microorganisms	10.3390/microorganisms12030448	2024
	Endophytic actinomycetes promote growth and fruits quality of tomato (Solanum lycopersicum): an approach for sustainable tomato production.	Khomampai J, Jeeatid N, Kaeomuangmoon T, Pathom-Aree W, Rangseekaew P, Yosen T, Khongdee N, Chromkaew Y.	PeerJ	10.7717/peerj.17725	2024
Enzymology	[Alkaline-adapted beta-mannanase of Bacillus pumilus: gene heterologous expression and enzyme characterization].	Tang J, Guo S, Wang W, Wei W, Wei D.	Wei Sheng Wu Xue Bao		2015
	The effect of ribose pre-treatment of cortical bone on gamma-irradiation sterilization effectiveness.	Attia T, Tupy J, Asker D, Hatton B, Grynpas M, Willett T.	Cell Tissue Bank	10.1007/s10561-017-9662-1	2017
	Characterization of Bacillus Strains from Natural Honeybee Products with High Keratinolytic Activity and Antimicrobial Potential.	Martin-Gonzalez D, Bordel S, Solis S, Gutierrez-Merino J, Santos-Beneit F.	Microorganisms	10.3390/microorganisms11020456	2023
Metabolism	Increased mRNA expression of selected antimicrobial peptides around ovulation and during inflammatory processes in the bovine endometrium postpartum.	Ibrahim M, Peter S, Gartner MA, Michel G, Jung M, Einspanier R, Gabler C.	Theriogenology	10.1016/j.theriogenology.2016.06.022	2016
Metabolism	[Combined action of binase and bleomycin toward human lung adenocarcinoma cells].	Zelenikhin PV, Makeeva AV, Nguen TN, Siraj YA, Ilinskaya ON.	Biomed Khim	10.18097/pbmc20166203279	2016
	Diagnosing Intramammary Infection: Meta-Analysis and Mapping Review on Frequency and Udder Health Relevance of Microorganism Species Isolated from Bovine Milk Samples.	Kurban D, Roy JP, Kabera F, Frechette A, Um MM, Albaaj A, Rowe S, Godden S, Adkins PRF, Middleton JR, Gauthier ML, Keefe GP, DeVries TJ, Kelton DF, Moroni P, Veiga Dos Santos M, Barkema HW, Dufour S.	Animals (Basel)	10.3390/ani12233288	2022
	Bacillus pumilus increases boron uptake and inhibits rapeseed growth under boron supply irrespective of phosphorus fertilization.	Masood S, Zhao XQ, Shen RF.	AoB Plants	10.1093/aobpla/plz036	2019
Phylogeny	Diversity and enzymatic potentialities of Bacillus sp. strains isolated from a polluted freshwater ecosystem in Cuba.	Larrea-Murrell JA, Rojas-Badia MM, Garcia-Soto I, Romeu-Alvarez B, Bacchetti T, Gillis A, Boltes-Espinola AK, Heydrich-Perez M, Lugo-Moya D, Mahillon J.	World J Microbiol Biotechnol	10.1007/s11274-018-2411-1	2018
	Synergic Involvements of Microorganisms in the Biomedical Increase of Polyphenols and Flavonoids during the Fermentation of Ginger Juice.	Kayath CA, Ibala Zamba A, Mokemiabeka SN, Opa-Iloy M, Elenga Wilson PS, Kaya-Ongoto MD, Mouellet Maboulou RJ, Nguimbi E.	Int J Microbiol	10.1155/2020/8417693	2020
	Effect of plant growth promoting Bacillus spp. on nutritional properties of Amaranthus hypochondriacus grains.	Pandey C, Bajpai VK, Negi YK, Rather IA, Maheshwari DK.	Saudi J Biol Sci	10.1016/j.sjbs.2018.03.003	2018
Biotechnology	Pigment production by a newly isolated strain Pycnoporus sanguineus SYBC-L7 in solid-state fermentation.	Meng D, Shao X, Luo SP, Tian QP, Liao XR.	Front Microbiol	10.3389/fmicb.2022.1015913	2022
	Screening of bacterial endophytes of larch against Neofusicoccum laricinum and validation of their safety.	Liu Y, Han S, Song L, Li L, Wang H, Pan M, Tan J.	Microbiol Spectr	10.1128/spectrum.04112-23	2024
	[Growth and photochemical efficiency of photosystem ii in seedlings of two varieties of Capsicum annuum L. inoculated with rhizobacteria and arbuscular mycorrhizal fungi].	Angulo-Castro A, Ferrera-Cerrato R, Alarcon A, Almaraz-Suarez JJ, Delgadillo-Martinez J, Jimenez-Fernandez M, Garcia-Barradas O.	Rev Argent Microbiol	10.1016/j.ram.2017.03.011	2018
Phylogeny	Identification and Control of Latent Bacteria in in vitro Cultures of Sweetpotato [Ipomoea batatas (L.) Lam].	Izarra ML, Panta AL, Maza CR, Zea BC, Cruzado J, Gutarra LR, Rivera CR, Ellis D, Kreuze JF.	Front Plant Sci	10.3389/fpls.2020.00903	2020
	Digital data for quick response (QR) codes of alkalophilic Bacillus pumilus to identify and to compare bacilli isolated from Lonar Crator Lake, India.	Rekadwad BN, Khobragade CN.	Data Brief	10.1016/j.dib.2016.03.103	2016
Enzymology	Purification and characterization of the low molecular weight xylanase from Bacillus cereus L-1.	Zhang G, Li Z, Chen G, Zhang L, Cai W, Deng S, Zhang H, Wu L, Li H, Liu H.	Braz J Microbiol	10.1007/s42770-023-01129-5	2023
	The impact of pine wilt disease on the endophytic microbial communities structure of Pinus koraiensis.	Li D, Yu Y, Tian C, Lu S, Jiang S.	Front Microbiol	10.3389/fmicb.2024.1493808	2024
	Warmed-over flavour profiles, microbial changes, shelf-life and check-all-that-apply sensory analysis of cooked minced pork treated with varying levels of Moringa oleifera leaf and root powder.	N S L, A J A, E M I.	Heliyon	10.1016/j.heliyon.2022.e10616	2022
	Green synthesis and characterization of gold and silver nanoparticles using Mussaenda glabrata leaf extract and their environmental applications to dye degradation.	Francis S, Joseph S, Koshy EP, Mathew B.	Environ Sci Pollut Res Int	10.1007/s11356-017-9329-2	2017
	Screening, and Optimization of Fermentation Medium to Produce Secondary Metabolites from Bacillus amyloliquefaciens, for the Biocontrol of Early Leaf Spot Disease, and Growth Promoting Effects on Peanut (Arachis hypogaea L.).	Ahsan T, Zang C, Yu S, Pei X, Xie J, Lin Y, Liu X, Liang C.	J Fungi (Basel)	10.3390/jof8111223	2022
Metabolism	Effect of metal ions and petrochemicals on bioremediation of chlorpyrifos in aerobic sequencing batch bioreactor (ASBR).	Khalid S, Hashmi I, Jamal Khan S, Qazi IA, Nasir H.	Environ Sci Pollut Res Int	10.1007/s11356-016-7153-8	2016
Biotechnology	Seasonal and regional occurrence of heat-resistant spore-forming bacteria in the course of ultra-high temperature milk production in Tunisia.	Kmiha S, Aouadhi C, Klibi A, Jouini A, Bejaoui A, Mejri S, Maaroufi A.	J Dairy Sci	10.3168/jds.2016-11616	2017
Metabolism	Construction of protein-functionalized virus-like particles of parvovirus B19.	Bustos-Jaimes I, Soto-Roman RA, Gutierrez-Landa IA, Valadez-Garcia J, Segovia-Trinidad CL.	J Biotechnol	10.1016/j.jbiotec.2017.09.014	2017
Enzymology	Kinetic and thermodynamic properties of purified alkaline protease from Bacillus pumilus Y7 and non-covalent immobilization to poly(vinylimidazole)/clay hydrogel.	Duman YA, Tekin N.	Eng Life Sci	10.1002/elsc.201900119	2020
	Expression, secretion and functional characterization of three laccases in E. coli.	Mo Y, Lao HI, Au SW, Li IC, Hu J, Yuen HM, Cheong WM, Lo OLI, Seak LCU.	Synth Syst Biotechnol	10.1016/j.synbio.2021.12.002	2022
	Reduced fertilization supplemented with Bacillus safensis RGM 2450 and Bacillus siamensis RGM 2529 promotes tomato production in a sustainable way.	Altimira F, Godoy S, Arias-Aravena M, Vargas N, Gonzalez E, Dardon E, Montenegro E, Viteri I, Tapia E.	Front Plant Sci	10.3389/fpls.2024.1451887	2024
Biotechnology	Antifungal spectrum characterization and identification of strong volatile organic compounds produced by Bacillus pumilus TM-R.	Morita T, Tanaka I, Ryuda N, Ikari M, Ueno D, Someya T.	Heliyon	10.1016/j.heliyon.2019.e01817	2019
	Green Chemistry Meets Olive Mill Wastewater: Bioinspired Oxidation of Phenols and Polyphenols Using Selenium Catalysts.	Scimmi C, Szymanek I, Rogacz D, Passeri S, Patanella G, Kozlowski C, Deska M, Rychter P, Drabowicz J, Santi C.	Int J Mol Sci	10.3390/ijms26115192	2025
	[Inhibition of Bacillus pumilus AR03 on Alternaria alternata and Erysiphe cichoracearum on tobacco].	Wang J, Tian H, Kong FY, Wang YH, Zhang CS, Feng C.	Ying Yong Sheng Tai Xue Bao		2015
	Alkaline keratinase from Bacillus sp. DRS4 efficiently biodegrades chicken feathers to synthesize improved keratin/bacterial nanocellulose-based bioplastics.	Admasie TZ, Biadglegne F, Abda EM.	Heliyon	10.1016/j.heliyon.2024.e32768	2024
	Effect of Oxygen Plasma Treatment on Wheat Emergence and Yield in the Field.	Holc M, Mozetic M, Zaplotnik R, Vesel A, Gselman P, Recek N.	Plants (Basel)	10.3390/plants11192489	2022
	Identification, sequencing and comparative analysis of pBp15.S plasmid from the newly described entomopathogen Bacillus pumilus 15.1.	Garcia-Ramon DC, Luque-Navas MJ, Molina CA, Del Val C, Osuna A, Vilchez S.	Plasmid	10.1016/j.plasmid.2015.09.001	2015
	Contribution of Microbiota to Bioactivity Exerted by Bee Bread	Asoutis Didaras N, Karaiskou I, Nikolaidis M, Siaperopoulou C, Georgi I, Tsadila C, Karatasou K, Amoutzias G, Mossialos D.	Pharmaceuticals (Basel)		2024
	Epigenetic Control of Plant Response to Heavy Metals.	Fasani E, Giannelli G, Varotto S, Visioli G, Bellin D, Furini A, DalCorso G.	Plants (Basel)	10.3390/plants12183195	2023
	Genome Sequence of a Multidrug-Resistant Strain of Bacillus pumilus, CB01, Isolated from the Feces of an American Crow, Corvus brachyrhynchos.	Nelson RL, Castro MA, Katti M, Eisen JA, Van Laar TA.	Genome Announc	10.1128/genomea.00807-16	2016
	Bacterial metabolites influence the autofluorescence of Clostridioides difficile.	Ticer TD, Tingler AM, Glover JS, Dooley SA, Kendrick J, Zackular JP, Devkota S, Wu GD, Mahalak K, Engevik A, Engevik MA.	Front Microbiol	10.3389/fmicb.2024.1459795	2024
	Streptococcus agalactiae Infection in Nile Tilapia (Oreochromis niloticus): A Review.	Abdallah ESH, Metwally WGM, Abdel-Rahman MAM, Albano M, Mahmoud MM.	Biology (Basel)	10.3390/biology13110914	2024
	In Vitro Antibacterial Activity of Ozonated Olive Oil against Bacteria of Various Antimicrobial Resistance Profiles Isolated from Wounds of Companion Animals.	Lenart-Boron A, Stankiewicz K, Bulanda K, Czernecka N, Heliasz M, Hunter W, Ratajewicz A, Khachatryan K, Khachatryan G.	Int J Mol Sci	10.3390/ijms25063557	2024
Metabolism	Effects of direct-fed Bacillus pumilus 8G-134 on feed intake, milk yield, milk composition, feed conversion, and health condition of pre- and postpartum Holstein cows.	Luan S, Duersteler M, Galbraith EA, Cardoso FC.	J Dairy Sci	10.3168/jds.2015-9512	2015
	Isolation and Characterization of Multi-Trait Plant Growth-Promoting Endophytic Bacteria from Scots Pine Tissues.	Shalovylo YI, Yusypovych YM, Kit OY, Kovaleva VA.	J Microbiol Biotechnol	10.4014/jmb.2408.08056	2024
	Beneficial Microorganisms Improve Agricultural Sustainability under Climatic Extremes.	Jalal A, Oliveira CEDS, Rosa PAL, Galindo FS, Teixeira Filho MCM.	Life (Basel)	10.3390/life13051102	2023
Phylogeny	Diversity of indigenous endophytic bacteria associated with the roots of Chinese cabbage (Brassica campestris L.) cultivars and their antagonism towards pathogens.	Haque MA, Yun HD, Cho KM.	J Microbiol	10.1007/s12275-016-5641-7	2016
	Biotic countermeasures that rescue Nannochloropsis gaditana from a Bacillus safensis infection.	Humphrey B, Mackenzie M, Lobitz M, Schambach JY, Lasley G, Kolker S, Ricken B, Bennett H, Williams KP, Smallwood CR, Cahill J.	Front Microbiol	10.3389/fmicb.2023.1271836	2023
Pathogenicity	Swift fabrication of Ag nanostructures using a colloidal solution of Holostemma ada-kodien (Apocynaceae) - Antibiofilm potential, insecticidal activity against mosquitoes and non-target impact on water bugs.	Alyahya SA, Govindarajan M, Alharbi NS, Kadaikunnan S, Khaled JM, Mothana RA, Al-Anbr MN, Vaseeharan B, Ishwarya R, Yazhiniprabha M, Benelli G.	J Photochem Photobiol B	10.1016/j.jphotobiol.2018.02.019	2018
	Supercritical CO₂ sterilization: An effective treatment to reprocess FFP3 face masks and to reduce waste during COVID-19 pandemic.	Santos-Rosales V, Lopez-Iglesias C, Sampedro-Viana A, Alvarez-Lorenzo C, Ghazanfari S, Magarinos B, Garcia-Gonzalez CA.	Sci Total Environ	10.1016/j.scitotenv.2022.154089	2022
	Study of the Physicochemical and Biological Properties of the Lipid Complex of Marine Microalgae Isolated from the Coastal Areas of the Eastern Water Area of the Baltic Sea.	Dolganyuk V, Andreeva A, Sukhikh S, Kashirskikh E, Prosekov A, Ivanova S, Michaud P, Babich O.	Molecules	10.3390/molecules27185871	2022
Metabolism	Direct inhibition of oncogenic KRAS by Bacillus pumilus ribonuclease (binase).	Ilinskaya ON, Singh I, Dudkina E, Ulyanova V, Kayumov A, Barreto G.	Biochim Biophys Acta	10.1016/j.bbamcr.2016.04.005	2016
Metabolism	Biological degradation of aflatoxin M₁ by Bacillus pumilus E-1-1-1.	Gu X, Sun J, Cui Y, Wang X, Sang Y.	Microbiologyopen	10.1002/mbo3.663	2019
	Construction of novel shuttle expression vectors for gene expression in Bacillus subtilis and Bacillus pumilus.	Shao H, Cao Q, Zhao H, Tan X, Feng H.	J Gen Appl Microbiol	10.2323/jgam.61.124	2015
	Characterization of industrially-valuable xylano-pectinolytic enzymes produced concurrently by a novel isolate of Bacillus pumilus	Kaur A, Avtar Singh, Mahajan R.	Biotechnol Lett		2014
	Activity of alkanmonooxygenase alkB gene in strains of hydrocarbon-oxidizing bacteria isolated from petroleum products.	Shapiro TN, Manucharova NA, Lobakova ES.	Vavilovskii Zhurnal Genet Selektsii	10.18699/vjgb-22-70	2022
Metabolism	Sugarcane bagasse as support for immobilization of Bacillus pumilus HZ-2 and its use in bioremediation of mesotrione-contaminated soils.	Liu J, Chen S, Ding J, Xiao Y, Han H, Zhong G.	Appl Microbiol Biotechnol	10.1007/s00253-015-6935-0	2015
Pathogenicity	Pathogenic features of heterotrophic plate count bacteria from drinking-water boreholes.	Horn S, Pieters R, Bezuidenhout C.	J Water Health	10.2166/wh.2016.009	2016
	Diversity of Bacteria Isolated from the Flies Musca domestica (Muscidae) and Chrysomya megacephala (Calliphoridae) with Emphasis on Vectored Pathogens	Brits D, Brooks M., Villet M.H..	African entomology : journal of the Entomological Society of Southern Africa.		2016
	Effective Removal of Different Heavy Metals Ion (Cu, Pb, and Cd) from Aqueous Solutions by Various Molecular Weight and Salt Types of Poly-gamma-Glutamic Acid.	Tsai SY, Chang CK, Wei PY, Huang SY, Gavahian M, Santoso SP, Hsieh CW.	Molecules	10.3390/molecules29051054	2024
Enzymology	[Expression optimization of Bacillus pumilus subtilisin-like proteinase].	Cheremin AM, Niamsuren Ch, Toimentseva AA, Sharipova MR.	Bioorg Khim	10.1134/s1068162014060053	2014
	Isolation and identification of antifungal, antibacterial and nematocide agents from marine bacillus gottheilii MSB1.	Shehata AS, Samy MA, Sobhy SE, Farag AM, El-Sherbiny IM, Saleh AA, Hafez EE, Abdel-Mogib M, Aboul-Ela HM.	BMC Biotechnol	10.1186/s12896-024-00920-y	2024
Enzymology	Heterologous expression and characterization of a new heme-catalase in Bacillus subtilis 168.	Philibert T, Rao Z, Yang T, Zhou J, Huang G, Irene K, Samuel N.	J Ind Microbiol Biotechnol	10.1007/s10295-016-1758-2	2016
Enzymology	Salt stress represses production of extracellular proteases in Bacillus pumilus.	Liu RF, Huang CL, Feng H.	Genet Mol Res	10.4238/2015.may.11.27	2015
	Rapid high-throughput processing of tissue samples for microbiological diagnosis of periprosthetic joint infections using bead-beating homogenization.	Jazmati N, Liebold C, Offerhaus C, Volkenand A, Grote S, Popsel J, Korber-Irrgang B, Hoppe T, Wisplinghoff H.	J Clin Microbiol	10.1128/jcm.01486-23	2024
Metabolism	Exploring Antifouling Activity of Biosurfactants Producing Marine Bacteria Isolated from Gulf of California.	Aleman-Vega M, Sanchez-Lozano I, Hernandez-Guerrero CJ, Hellio C, Quintana ET.	Int J Mol Sci	10.3390/ijms21176068	2020
Genetics	Peeling the Layers Away: The Genomic Characterization of Bacillus pumilus 64-1, an Isolate With Antimicrobial Activity From the Marine Sponge Plakina cyanorosea (Porifera, Homoscleromorpha).	Freitas-Silva J, de Oliveira BFR, Vigoder FM, Muricy G, Dobson ADW, Laport MS.	Front Microbiol	10.3389/fmicb.2020.592735	2020
	Recent Advances and Perspectives on Food-Grade Immobilisation Systems for Enzymes.	Chalella Mazzocato M, Jacquier JC.	Foods	10.3390/foods13132127	2024
	A longitudinal field study of commercial honey bees shows that non-native probiotics do not rescue antibiotic treatment, and are generally not beneficial.	Anderson KE, Allen NO, Copeland DC, Kortenkamp OL, Erickson R, Mott BM, Oliver R.	Sci Rep	10.1038/s41598-024-52118-z	2024
	New Insights into the Synergistic Interaction Between Pseudomonas qingdaonensis NZ 1 and Silicon to Mitigate Drought Stress in Rice.	Zainurin N, Imran M, Shaffique S, Khan MA, Kang SM, Injamum-Ul-Hoque M, Das AK, Yun BW, Lee IJ.	Microorganisms	10.3390/microorganisms13051046	2025
	Production and characterization of an organic solvent activated protease from haloalkaliphilic bacterium Halobiforma sp. strain BNMIITR.	Gupta M, Choudhury B, Navani NK.	Heliyon	10.1016/j.heliyon.2024.e25084	2024
	Directed evolution driving the generation of an efficient keratinase variant to facilitate the feather degradation.	Zhang J, Su C, Kong XL, Gong JS, Liu YL, Li H, Qin J, Xu ZH, Shi JS.	Bioresour Bioprocess	10.1186/s40643-022-00524-4	2022
	Endohyphal bacteria from fungal endophytes of the Mediterranean cypress (Cupressus sempervirens) exhibit in vitro bioactivity	Pakvaz S, Sultani J.	For Pathol	10.1111/efp.12274	2016
	Growth and (137)Cs uptake of four Brassica species influenced by inoculation with a plant growth-promoting rhizobacterium Bacillus pumilus in three contaminated farmlands in Fukushima prefecture, Japan.	Aung HP, Djedidi S, Oo AZ, Aye YS, Yokoyama T, Suzuki S, Sekimoto H, Bellingrath-Kimura SD.	Sci Total Environ	10.1016/j.scitotenv.2015.03.109	2015
Enzymology	The Native Monomer of Bacillus Pumilus Ribonuclease Does Not Exist Extracellularly.	Ilinskaya O, Ulyanova V, Lisevich I, Dudkina E, Zakharchenko N, Kusova A, Faizullin D, Zuev Y.	Biomed Res Int	10.1155/2018/4837623	2018
	The internal bacterial diversity of stored product pests	Sevim A, Sevim E, Demirci M, Sandalli C.	Ann Microbiol		2016
Phylogeny	Isolation and Characterisation of the Bundooravirus Genus and Phylogenetic Investigation of the Salasmaviridae Bacteriophages.	Stanton CR, Rice DTF, Beer M, Batinovic S, Petrovski S.	Viruses	10.3390/v13081557	2021
	Innovative Processing and Sterilization Techniques to Unlock the Potential of Silk Sericin for Biomedical Applications.	Veiga A, Ramirez-Jimenez RA, Santos-Rosales V, Garcia-Gonzalez CA, Aguilar MR, Rojo L, Oliveira AL.	Gels	10.3390/gels11020114	2025
	Role of Bacillus spp. Plant Growth Promoting Properties in Mitigating Biotic and Abiotic Stresses in Lowland Rice (Oryza sativa L.).	Weinand T, El-Hasan A, Asch F.	Microorganisms	10.3390/microorganisms11092327	2023
	Improved rock phosphate dissolution from organic acids is driven by nitrate assimilation of bacteria isolated from nitrate and CaCO3-rich soil.	Garcia-Sanchez M, Bertrand I, Barakat A, Zeroual Y, Oukarroum A, Plassard C.	PLoS One	10.1371/journal.pone.0283437	2023
Enzymology	A trimeric and thermostable lichenase from B. pumilus US570 strain: Biochemical and molecular characterization.	Elgharbi F, Ben Hlima H, Ameri R, Bejar S, Hmida-Sayari A.	Int J Biol Macromol	10.1016/j.ijbiomac.2016.11.021	2017
	Interplay between behavior, morphology and physiology supports lepidophagy in the catfish Pachypterus khavalchor (Siluriformes: Horabagridae).	Gosavi SM, Kharat SS, Kumkar P, Navarange SS.	Zoology (Jena)	10.1016/j.zool.2017.07.003	2018
Phylogeny	Microbiological bioassay using Bacillus pumilus to detect tetracycline in milk.	Tumini M, Nagel OG, Althaus RL.	J Dairy Res	10.1017/s0022029915000138	2015
Enzymology	Insight into the bacterial diversity of fermentation woad dye vats as revealed by PCR-DGGE and pyrosequencing.	Milanovic V, Osimani A, Taccari M, Garofalo C, Butta A, Clementi F, Aquilanti L.	J Ind Microbiol Biotechnol	10.1007/s10295-017-1921-4	2017
	Assessment of the phytochemical, antioxidant and antibacterial activities of Heteromorpha arborescens (Spreng.) Cham & Schltdl. leaf extracts.	Abifarin TO, Otunola GA, Afolayan AJ.	F1000Res	10.12688/f1000research.25197.1	2020
Pathogenicity	The potential of PGPR and Trichoderma-based bioproducts and resistant cultivars as tools to manage clubroot disease in cruciferous crops.	Moreno-Velandia CA, Garcia-Arias FL, Davila-Mora L, Rodriguez E, Villabona-Gelvez A, Revelo-Gomez EG, Marcillo-Paguay CA, Riascos-Ortiz DH, Zuluaga AP.	Front Plant Sci	10.3389/fpls.2023.1323530	2023
	Expression of concern: Bacillus pumilus reveals a remarkably high resistance to hydrogen peroxide provoked oxidative stress.	PLOS ONE Editors.	PLoS One	10.1371/journal.pone.0100716	2014
	Fabrication of Gelatin-ZnO Nanofibers for Antibacterial Applications.	Babayevska N, Przysiecka L, Nowaczyk G, Jarek M, Jarvekulg M, Kangur T, Janiszewska E, Jurga S, Iatsunskyi I.	Materials (Basel)	10.3390/ma14010103	2020
	Exchange of Microbiomes in Plant-Insect Herbivore Interactions.	Pirttila AM, Brusila V, Koskimaki JJ, Wali PR, Ruotsalainen AL, Mutanen M, Markkola AM.	mBio	10.1128/mbio.03210-22	2023
Enzymology	Single amino acid mutation alters thermostability of the alkaline protease from Bacillus pumilus: thermodynamics and temperature dependence.	Huang R, Yang Q, Feng H.	Acta Biochim Biophys Sin (Shanghai)	10.1093/abbs/gmu120	2015
	New derivatives of nonactic and homononactic acids from Bacillus pumilus derived from Breynia fruticosa.	Han L, Huo P, Chen H, Li S, Jiang Y, Li L, Xu L, Jiang C, Huang X.	Chem Biodivers	10.1002/cbdv.201300350	2014
	Enzymatic degradation of polylactic acid (PLA).	Shalem A, Yehezkeli O, Fishman A.	Appl Microbiol Biotechnol	10.1007/s00253-024-13212-4	2024
	Anticancer, antimicrobial and antioxidant activity of CuO-ZnO bimetallic nanoparticles: green synthesised from Eryngium foetidum leaf extract.	Daimari J, Deka AK.	Sci Rep	10.1038/s41598-024-69847-w	2024
Genetics	Comprehensive genomic analysis of Bacillus subtilis and Bacillus paralicheniformis associated with the pearl millet panicle reveals their antimicrobial potential against important plant pathogens.	Ashajyothi M, Mahadevakumar S, Venkatesh YN, Sarma PVSRN, Danteswari C, Balamurugan A, Prakash G, Khandelwal V, Tarasatyavathi C, Podile AR, Mysore KS, Chandranayaka S.	BMC Plant Biol	10.1186/s12870-024-04881-4	2024
	Affinity-Driven Immobilization of Proteins to Hematite Nanoparticles.	Zare-Eelanjegh E, Bora DK, Rupper P, Schrantz K, Thony-Meyer L, Maniura-Weber K, Richter M, Faccio G.	ACS Appl Mater Interfaces	10.1021/acsami.6b03284	2016
Genetics	Effect of endophytic diazotroph Enterobacter roggenkampii ED5 on nitrogen-metabolism-related microecology in the sugarcane rhizosphere at different nitrogen levels.	Guo DJ, Li DP, Yang B, Verma KK, Singh RK, Singh P, Khan Q, Sharma A, Qin Y, Zhang BQ, Song XP, Li YR.	Front Microbiol	10.3389/fmicb.2023.1132016	2023
	Diversity and bioactivity of bacterial endophyte community of Cupressaceae	Sultani J, Zaheri-Shoja M, Hamzei J, Hosseyni-Moghaddam MS, Pakvaz S.	For Pathol		2016
	Expression of Bacillus pumilus keratinase rK27 in Bacillus subtilis: enzyme application for developing renewable flocculants from bone meal	Rajput R, Gupta R.	Ann Microbiol	10.1007/s13213-013-0770-2	2014
	Protocol for comparing ribosomal levels in single bacterial cells at different growth stages using rRNA-FISH.	Ciolli Mattioli C, Avraham R.	STAR Protoc	10.1016/j.xpro.2024.103137	2024
Enzymology	Characterization of industrially-valuable xylano-pectinolytic enzymes produced concurrently by a novel isolate of Bacillus pumilus.	Kaur A, Singh A, Mahajan R.	Biotechnol Lett	10.1007/s10529-014-1595-1	2014
Pathogenicity	Bacillus pumilus probiotic feed supplementation mitigates Lawsonia intracellularis shedding and lesions.	Opriessnig T, Karuppannan AK, Beckler D, Ait-Ali T, Cubas-Atienzar A, Halbur PG.	Vet Res	10.1186/s13567-019-0696-1	2019
	Characterization of a Plant Growth-Promoting Endohyphal Bacillus subtilis in Fusarium acuminatum from Spiranthes sinensis.	Fang L, Zheng X, Sun Z, Li Y, Deng J, Zhou YI.	Pol J Microbiol	10.33073/pjm-2023-007	2023
	Biological functions of endophytic bacteria in Robinia pseudoacacia 'Hongsen'.	Huang M, Chen L, Ma J, Mo J, He L, Liang Q, Peng G, Tan Z.	Front Microbiol	10.3389/fmicb.2023.1128727	2023
	Genome Sequence of Bacillus pumilus Strain Bonn, Isolated from an Anthrax-Like Necrotic Skin Infection Site of a Child.	Grass G, Bierbaum G, Molitor E, Gotte N, Antwerpen M.	Genome Announc	10.1128/genomea.01741-15	2016
	Evaluation of antibacterial efficacy of biosynthesized silver nanoparticles derived from fungi against endo-perio pathogens Porphyromonas gingivalis, Bacillus pumilus, and Enterococcus faecalis.	Halkai KR, Mudda JA, Shivanna V, Rathod V, Halkai RS.	J Conserv Dent	10.4103/jcd.jcd_173_17	2017
Metabolism	Antibacterial metabolites and bacteriolytic enzymes produced by Bacillus pumilus during bacteriolysis of Arthrobacter citreus.	Brack C, Mikolasch A, Schlueter R, Otto A, Becher D, Wegner U, Albrecht D, Riedel K, Schauer F.	Mar Biotechnol (NY)	10.1007/s10126-015-9614-3	2015
Phylogeny	Cutaneous Microbiome Profiles Following Chlorhexidine Treatment in a 72-Hour Daily Follow-Up Paired Design: a Pilot Study.	Mougeot JC, Beckman MF, Bahrani Mougeot F, Horton JM.	Microbiol Spectr	10.1128/spectrum.01753-21	2022
Phylogeny	Phylogenetic and clonality analysis of Bacillus pumilus isolates uncovered a highly heterogeneous population of different closely related species and clones.	Branquinho R, Meirinhos-Soares L, Carrico JA, Pintado M, Peixe LV.	FEMS Microbiol Ecol	10.1111/1574-6941.12426	2014
Biotechnology	From hive to laboratory - biotechnological potential of microorganisms from honey.	Plader M, Sekul J, Kot AM, Pobiega K.	World J Microbiol Biotechnol	10.1007/s11274-025-04551-z	2025
	First Report of Olive Branch Dieback in Croatia Caused by Cytospora pruinosa Défago.	Petrovic E, Vrandecic K, Ivic D, Cosic J, Godena S.	Microorganisms	10.3390/microorganisms11071679	2023
	Structure and Mechanism of a Cold-Adapted Bacterial Lipase.	van der Ent F, Lund BA, Svalberg L, Purg M, Chukwu G, Widersten M, Isaksen GV, Brandsdal BO, Aqvist J.	Biochemistry	10.1021/acs.biochem.2c00087	2022
Phylogeny	Dynamics of bacterial class Bacilli in the deepest valley lake of Kashmir-the Manasbal Lake.	Shafi S, Kamili AN, Shah MA, Bandh SA, Dar R.	Microb Pathog	10.1016/j.micpath.2017.01.018	2017
	Computer-Aided Lipase Engineering for Improving Their Stability and Activity in the Food Industry: State of the Art.	Cheng W, Nian B.	Molecules	10.3390/molecules28155848	2023
Metabolism	A Phosphate Starvation-Inducible Ribonuclease of Bacillus licheniformis.	Nguyen TT, Nguyen MH, Nguyen HT, Nguyen HA, Le TH, Schweder T, Jurgen B.	J Microbiol Biotechnol	10.4014/jmb.1601.01087	2016
	Effect of microbial fertilizers on soil microbial community structure in rotating and continuous cropping Glycyrrhiza uralensis.	Qiu D, Wang X, Jiang K, Gong G, Bao F.	Front Plant Sci	10.3389/fpls.2024.1452090	2024
	A three-species synthetic community model whose rapid response to antagonism allows the study of higher-order dynamics and emergent properties in minutes.	Aguilar-Salinas B, Olmedo-Alvarez G.	Front Microbiol	10.3389/fmicb.2023.1057883	2023
Metabolism	[Screening and identification of Bacillus pumilus producing double active protein of anticoagulation and thrombolysis].	Liu B, Luo Y, Tao X, Xie X, Ma X, Zhang L.	Wei Sheng Wu Xue Bao		2014
	A microbial inhibition assay in microplates using Bacillus licheniformis for detection of enrofloxacin and sulfamethazine in chicken spiked kidney, liver and muscle tissues.	Mirzaie S, Jamiri F, Javanmard Dakheli M, Mirdamadi S.	Vet Med Sci	10.1002/vms3.1293	2023
	Transforming Feather Meal Into a High-Performance Feed for Broilers.	Salehizadeh M, Tajabadi Ebrahimi M, Mousavi SN, Sepahi AA, Orooji R.	Vet Med Sci	10.1002/vms3.70199	2025
	Exploring microbial diversity and biosynthetic potential in zoo and wildlife animal microbiomes.	Schmartz GP, Rehner J, Schuff MJ, Molano LG, Becker SL, Krawczyk M, Tagirdzhanov A, Gurevich A, Francke R, Muller R, Keller V, Keller A.	Nat Commun	10.1038/s41467-024-52669-9	2024
Metabolism	Molecular characterization of cellulose-degrading Bacillus pumilus from the soil of tea garden, Darjeeling hills, India.	Padaria JC, Sarkar K, Lone SA, Srivastava S.	J Environ Biol		2014
Biotechnology	Characterization of Bacteria Isolation of Bacteria from Pinyon Rhizosphere, Producing Biosurfactants from Agro-Industrial Waste.	Wong-Villarreal A, Reyes-Lopez L, Gonzalez HC, Gonzalez CB, Yanez-Ocampo G.	Pol J Microbiol	10.5604/17331331.1204478	2016
	Diversity and plant growth promoting ability of rice root-associated bacteria in Burkina-Faso and cross-comparison with metabarcoding data.	Sondo M, Wonni I, Koita K, Rimbault I, Barro M, Tollenaere C, Moulin L, Klonowska A.	PLoS One	10.1371/journal.pone.0287084	2023
Genetics	Draft Genome Sequence of Bacillus pumilus ku-bf1 Isolated from the Gut Contents of Wood Boring Mesomorphus sp.	Balsingh J, Radhakrishna S, Ulaganathan K.	Front Microbiol	10.3389/fmicb.2016.01037	2016
Metabolism	Biosurfactant production and hydrocarbon degradation activity of endophytic bacteria isolated from Chelidonium majus L.	Marchut-Mikolajczyk O, Drozdzynski P, Pietrzyk D, Antczak T.	Microb Cell Fact	10.1186/s12934-018-1017-5	2018
	Bacterial exopolysaccharide (EPS)-coated ZnO nanoparticles showed high antibiofilm activity and larvicidal toxicity against malaria and Zika virus vectors.	Abinaya M, Vaseeharan B, Divya M, Sharmili A, Govindarajan M, Alharbi NS, Kadaikunnan S, Khaled JM, Benelli G.	J Trace Elem Med Biol	10.1016/j.jtemb.2017.10.002	2018
Transcriptome	Disruption of the pleiotropic gene scoC causes transcriptomic and phenotypical changes in Bacillus pumilus BA06.	Han LL, Liu YC, Miao CC, Feng H.	BMC Genomics	10.1186/s12864-019-5671-8	2019
Enzymology	Bacillus pumilus S124A carboxymethyl cellulase; a thermo stable enzyme with a wide substrate spectrum utility.	Balasubramanian N, Simoes N.	Int J Biol Macromol	10.1016/j.ijbiomac.2014.03.014	2014
	Encephalartos natalensis, Their Nutrient-Cycling Microbes and Enzymes: A Story of Successful Trade-Offs.	Ndlovu S, Suinyuy TN, Perez-Fernandez MA, Magadlela A.	Plants (Basel)	10.3390/plants12051034	2023
	Nitrogen fertilizer improves Salix matsudana growth and soil qualities	Wang Q, Niu X, Huang S, Di D, Su B, Yuan Y, Wu Y, Huang D.	Front Microbiol		2025
Pathogenicity	Two-stage phyto-microremediation of tannery effluent by Spirodela polyrrhiza (L.) Schleid. and chromium resistant bacteria.	Singh A, Vyas D, Malaviya P.	Bioresour Technol	10.1016/j.biortech.2016.06.025	2016
	Characterization and a point mutational approach of a psychrophilic lipase from an arctic bacterium, Bacillus pumilus	Wi AR, Jeon SJ, Kim S, Park HJ, Kim D, Han SJ, Yim JH, Kim HW.	Biotechnol Lett		2014
Metabolism	An alkali-thermostable xylanase from Bacillus pumilus functionally expressed in Kluyveromyces lactis and evaluation of its deinking efficiency.	Thomas L, Ushasree MV, Pandey A.	Bioresour Technol	10.1016/j.biortech.2014.03.037	2014
	A Comparative Study on Trichoderma harzianum and a Combination of Candida/Bacillus as Tools for the Bioremediation of Table Olive Processing Water.	Campaniello D, Carlucci A, Speranza B, Raimondo ML, Cibelli F, Rosaria Corbo M, Bevilacqua A.	Microorganisms	10.3390/microorganisms8060878	2020
Phylogeny	Bacterial biota of Nigeen Lake waters (Kashmir Valley).	Zaffar RM, Ganai BA.	Microb Pathog	10.1016/j.micpath.2016.05.005	2016
	Review of techniques for the in-situ sterilization of soil contaminated with Bacillus anthracis spores or other pathogens.	Wood JP.	Res Microbiol	10.1016/j.resmic.2023.104175	2024
	Probiotic-Based Approaches for Sustainable Control of Infectious Risk in Mass Transport: Current Data and Future Perspectives.	Soffritti I, D'Accolti M, Bini F, Mazziga E, Volta A, Bisi M, Mazzacane S, Caselli E.	Microb Biotechnol	10.1111/1751-7915.70177	2025
	Unprecedented access of phenolic substrates to the heme active site of a catalase: substrate binding and peroxidase-like reactivity of Bacillus pumilus catalase monitored by X-ray crystallography and EPR spectroscopy.	Loewen PC, Villanueva J, Switala J, Donald LJ, Ivancich A.	Proteins	10.1002/prot.24777	2015
	Wounds of Companion Animals as a Habitat of Antibiotic-Resistant Bacteria That Are Potentially Harmful to Humans-Phenotypic, Proteomic and Molecular Detection.	Lenart-Boron A, Stankiewicz K, Czernecka N, Ratajewicz A, Bulanda K, Heliasz M, Sosinska D, Dworak K, Ciesielska D, Sieminska I, Tischner M.	Int J Mol Sci	10.3390/ijms25063121	2024
	Study on Quality Changes of Kelp Gel Edible Granules during Storage.	Chen T, Li Y, Wang Y, Chen J, Fan L, Liu Z.	Foods	10.3390/foods13142267	2024
	Antibiotic resistance and tolerance to simulated gastrointestinal conditions of eight hemolytic Bacillus pumilus isolated from pulque, a traditional Mexican beverage.	Gonzalez-Vazquez R, Mayorga-Reyes L, Monroy-Lopez A, Reyes-Nava LA, Rivera-Espinoza Y, Azaola-Espinosa A.	Food Sci Biotechnol	10.1007/s10068-017-0061-y	2017
Genetics	Comparative metagenomic analysis from Sundarbans ecosystems advances our understanding of microbial communities and their functional roles.	Das BK, Chakraborty HJ, Kumar V, Rout AK, Patra B, Das SK, Behera BK.	Sci Rep	10.1038/s41598-024-67240-1	2024
	Microorganisms and heavy metals associated with atmospheric deposition in a congested urban environment of a developing country: Sri Lanka.	Weerasundara L, Amarasekara RWK, Magana-Arachchi DN, Ziyath AM, Karunaratne DGGP, Goonetilleke A, Vithanage M.	Sci Total Environ	10.1016/j.scitotenv.2017.01.121	2017
	Production of polyhydroxyalkanoates (PHA) using sludge from different wastewater treatment processes and the potential for medical and pharmaceutical applications.	Lam W, Wang Y, Chan PL, Chan SW, Tsang YF, Chua H, Yu PHF.	Environ Technol	10.1080/09593330.2017.1316316	2017
	Soil-Gradient-Derived Bacterial Synthetic Communities Enhance Drought Tolerance in Quercus pubescens and Sorbus domestica Seedlings.	Aleksieienko I, Fernandes Hertel M, Reilhan J, de Castro M, Legeret B, Caixeta Oliveira H, Reiter IM, Santaella C.	Plants (Basel)	10.3390/plants14111659	2025
Metabolism	Bacterial enzymes effectively digest Alzheimer's beta-amyloid peptide.	Danilova YV, Shagimardanova EI, Margulis AB, Toymentseva AA, Balaban NP, Rudakova NL, Rizvanov AA, Sharipova MR, Palotas A.	Brain Res Bull	10.1016/j.brainresbull.2014.08.009	2014
	Triple combinations with PGPB stimulate plant growth in micropropagated banana plantlets	Souza GLOD, Nietsche S, Xavier AA, Costa MR, Pereira MCT, Santos MA.	Appl Soil Ecol	10.1016/j.apsoil.2016.03.001	2016
	Performance of four different microalgae-based technologies in antibiotics removal under multiple concentrations of antibiotics and strigolactone analogue GR24 administration.	Huang J, Wang Z, Zhao C, Yang H, Niu L.	Sci Rep	10.1038/s41598-024-67156-w	2024
	Influence of Fermented Broccoli Residues on Fattening Performance, Nutrient Utilization, and Meat Properties of Finishing Pigs.	Zhao Z, Wu J, Yao X, Sun H, Wu Y, Zhou H, Wang X, Guo K, Deng B, Tang J.	Animals (Basel)	10.3390/ani14131987	2024
	Chemical Characterisation, Antidiabetic, Antibacterial, and In Silico Studies for Different Extracts of Haloxylon stocksii (Boiss.) Benth: A Promising Halophyte.	Rizvi SNR, Afzal S, Khan KU, Aati HY, Rao H, Ghalloo BA, Shahzad MN, Khan DA, Esatbeyoglu T, Korma SA.	Molecules	10.3390/molecules28093847	2023
	Multi-potent rhizobacteria enhance banana growth and reduce chemical fertilizer input.	Bright JP, Chinnasamy K, Maheshwari HS, Perveen K, Khan F, Barasarathi J, Dananjeyan B, Rebouh NY.	Front Microbiol	10.3389/fmicb.2025.1659278	2025
Phylogeny	Isolation of haemolytic bacilli from field-collected Culicoides oxystoma and Culicoides peregrinus: potential vectors of bluetongue virus in West Bengal, India.	Harsha R, Pan B, Ghosh K, Mazumdar A.	Med Vet Entomol	10.1111/mve.12097	2015
	Making the best of research investment in pathogens control through biocontrol. How is research correlated with agricultural microbial biological control product availability?	Helepciuc FE, Todor A.	PLoS Pathog	10.1371/journal.ppat.1011071	2023
	Prevalence, diversity and applications potential of nodules endophytic bacteria: a systematic review.	Hnini M, Aurag J.	Front Microbiol	10.3389/fmicb.2024.1386742	2024
	DePolymerase Predictor (DePP): a machine learning tool for the targeted identification of phage depolymerases.	Magill DJ, Skvortsov TA.	BMC Bioinformatics	10.1186/s12859-023-05341-w	2023
Enzymology	Improving the Quality of Wheat Flour Bread by a Thermophilic Xylanase with Ultra Activity and Stability Reconstructed by Ancestral Sequence and Computational-Aided Analysis.	Hu G, Hong X, Zhu M, Lei L, Han Z, Meng Y, Yang J.	Molecules	10.3390/molecules29081895	2024
	Genomics, Proteomics, and Antifungal Activity of Chitinase from the Antarctic Marine Bacterium Curtobacterium sp. CBMAI 2942.	Vasquez YMS, Cueva-Yesquen LG, Duarte AWF, Rosa LH, Valladao R, Lopes AR, Costa Bonugli-Santos R, Oliveira VM.	Int J Mol Sci	10.3390/ijms25179250	2024
Phylogeny	[Identification of dominant microbes from traditional Chinese medicine Pinelliae Rhizoma Fermentata].	Guo JJ, Su MS, Wang LY, Ren JX, Yang M, Xie XM.	Zhongguo Zhong Yao Za Zhi	10.4268/cjcmm20161614	2016
Enzymology	[Identification of 2',3'-cGMP as an intermediate of RNA catalytic cleavage by binase and evaluation of its biological action].	Sokurenko JV, Zelenikhin PV, Ulyanova VV, Kolpakov AI, Muler D, Ilinskaya ON.	Bioorg Khim	10.1134/s1068162015010136	2015
Metabolism	Microbial Degradation of Polyhydroxyalkanoates with Different Chemical Compositions and Their Biodegradability.	Volova TG, Prudnikova SV, Vinogradova ON, Syrvacheva DA, Shishatskaya EI.	Microb Ecol	10.1007/s00248-016-0852-3	2017
	Safety evaluation of the food enzyme xylanase from Bacillus pumilus (strain BLXSC).	EFSA Panel on Food Contact Materials, Enzymes and Processing Aids (CEP), Silano V, Barat Baviera JM, Bolognesi C, Cocconcelli PS, Crebelli R, Gott DM, Grob K, Lampi E, Mortensen A, Riviere G, Steffensen IL, Tlustos C, Van Loveren H, Vernis L, Zorn H, Glandorf B, Herman L, Jany KD, Penninks A, Arcella D, Aguilera-Gomez M, Kovalkovicova N, Liu Y, Maia J, Roncancio Pena C, Chesson A.	EFSA J	10.2903/j.efsa.2019.5901	2019
	Understanding the tolerance of halophilic archaea to stress landscapes.	Matarredona L, Zafrilla B, Camacho M, Bonete MJ, Esclapez J.	Environ Microbiol Rep	10.1111/1758-2229.70039	2024
	Assignment of low-molecular-weight selenometabolites in the root section of white cabbage.	Soos A, Kovacs B, Takacs T, Rekasi M, Dobosy P, Szoke C, Dernovics M, Ragalyi P.	Planta	10.1007/s00425-025-04651-y	2025
	Nanoencapsulated Essential Oils for Post-Harvest Preservation of Stored Cereals: A Review.	Maurya A, Yadav A, Soni M, Paul KK, Banjare U, Jha MK, Dwivedy AK, Dubey NK.	Foods	10.3390/foods13244013	2024
Metabolism	A novel thermostable GH5_7 beta-mannanase from Bacillus pumilus GBSW19 and its application in manno-oligosaccharides (MOS) production.	Zang H, Xie S, Wu H, Wang W, Shao X, Wu L, Rajer FU, Gao X.	Enzyme Microb Technol	10.1016/j.enzmictec.2015.06.007	2015
	Evaluation of new technique of sterilization using biological indicator.	Sheth NC, Rathod YV, Shenoi PR, Shori DD, Khode RT, Khadse AP.	J Conserv Dent	10.4103/jcd.jcd_253_16	2017
	Identification of plant beneficial Bacillus spp. for Resilient agricultural ecosystem.	Salwan R, Sharma V, Saini R, Pandey M.	Curr Res Microb Sci	10.1016/j.crmicr.2021.100046	2021
Enzymology	Phylogenetic diversity and biotechnological potentials of marine bacteria from continental slope of eastern Arabian Sea.	Farha AK, Tr T, Purushothaman A, Salam JA, Hatha AM.	J Genet Eng Biotechnol	10.1016/j.jgeb.2018.06.002	2018
Metabolism	Exo-pectinase production by Bacillus pumilus using different agricultural wastes and optimizing of medium components using response surface methodology.	Tepe O, Dursun AY.	Environ Sci Pollut Res Int	10.1007/s11356-014-2833-8	2014
	Seed bio-priming enhanced salt stress tolerance of maize (Zea mays L.) seedlings by regulating the antioxidant system and miRNA expression.	Aydinoglu F, Kahriman TY, Balci H.	3 Biotech	10.1007/s13205-023-03802-w	2023
Enzymology	C-terminal hybrid mutant of Bacillus pumilus cyanide dihydratase dramatically enhances thermal stability and pH tolerance by reinforcing oligomerization.	Crum MA, Park JM, Sewell BT, Benedik MJ.	J Appl Microbiol	10.1111/jam.12754	2015
	Biopolymer zein-coated gold nanoparticles: Synthesis, antibacterial potential, toxicity and histopathological effects against the Zika virus vector Aedes aegypti.	Suganya P, Vaseeharan B, Vijayakumar S, Balan B, Govindarajan M, Alharbi NS, Kadaikunnan S, Khaled JM, Benelli G.	J Photochem Photobiol B	10.1016/j.jphotobiol.2017.06.004	2017
Pathogenicity	Growth inhibition and antibiofilm potential of Ag nanoparticles coated with lectin, an arthropod immune molecule.	Jayanthi S, Shanthi S, Vaseeharan B, Gopi N, Govindarajan M, Alharbi NS, Kadaikunnan S, Khaled JM, Benelli G.	J Photochem Photobiol B	10.1016/j.jphotobiol.2017.04.011	2017
	Isolation of potential probiotic Bacillus spp. and assessment of their subcellular components to induce immune responses in Labeo rohita against Aeromonas hydrophila.	Ramesh D, Vinothkanna A, Rai AK, Vignesh VS.	Fish Shellfish Immunol	10.1016/j.fsi.2015.04.018	2015
	Phyto-treatment of tannery industry effluents under combined application of citric acid and chromium-reducing bacterial strain through Lemna minor L.: A lab scale study.	Arshad R, Al-Huqail AA, Alghanem SMS, Alsudays IM, Farid M, Sarfraz W, Abbas M, Asam ZUZ, Khalid N, Yong JWH, Abeed AHA.	Heliyon	10.1016/j.heliyon.2024.e36309	2024
	Improved salinity and dust stress tolerance in the desert halophyte Haloxylon aphyllum by halotolerant plant growth-promoting rhizobacteria.	Najafi Zilaie M, Mosleh Arani A, Etesami H, Dinarvand M.	Front Plant Sci	10.3389/fpls.2022.948260	2022
Genetics	Bioprospecting the Antibiofilm and Antimicrobial Activity of Soil and Insect Gut Bacteria.	Raffaelli S, Abreo E, Altier N, Vazquez A, Albores S.	Molecules	10.3390/molecules27062002	2022
	Green Synthesis of Zinc Oxide (ZnO) Nanoparticles from Green Algae and Their Assessment in Various Biological Applications.	Hameed H, Waheed A, Sharif MS, Saleem M, Afreen A, Tariq M, Kamal A, Al-Onazi WA, Al Farraj DA, Ahmad S, Mahmoud RM.	Micromachines (Basel)	10.3390/mi14050928	2023
	An update on thermostable keratinases for protein engineering against feather pollutants.	J L BJ, Dhanasingh I.	Appl Microbiol Biotechnol	10.1007/s00253-025-13459-5	2025
	Chemical Composition and Biological Evaluation of Typha domingensis Pers. to Ameliorate Health Pathologies: In Vitro and In Silico Approaches.	Dilshad R, Khan KU, Saeed L, Sherif AE, Ahmad S, Ovatlarnporn C, Nasim J, Hussain M, Ghalloo BA, Basit A, Mukhtar I.	Biomed Res Int	10.1155/2022/8010395	2022
	Probiotic capacity of commensal lactic acid bacteria from the intestine of Guinea pigs (Cavia porcellus).	Pinchao YA, Serna-Cock L, Mora OO.	Heliyon	10.1016/j.heliyon.2024.e29431	2024
Phylogeny	Screening and modes of action of antagonistic bacteria to control the fungal pathogen Phaeomoniella chlamydospora involved in grapevine trunk diseases.	Haidar R, Roudet J, Bonnard O, Dufour MC, Corio-Costet MF, Fert M, Gautier T, Deschamps A, Fermaud M.	Microbiol Res	10.1016/j.micres.2016.07.003	2016
Metabolism	A Bacillus sp. isolated from sediments of the Sarno River mouth, Gulf of Naples (Italy) produces a biofilm biosorbing Pb(II).	Pepi M, Borra M, Tamburrino S, Saggiomo M, Viola A, Viola A, Biffali E, Balestra C, Sprovieri M, Casotti R.	Sci Total Environ	10.1016/j.scitotenv.2016.04.097	2016
	Effectiveness of Bacillus pumilus PDSLzg-1, an innovative Hydrocarbon-Degrading Bacterium conferring antifungal and plant growth-promoting function.	Hao K, Ullah H, Qin X, Li H, Li F, Guo P.	3 Biotech	10.1007/s13205-019-1842-1	2019
	Regioselective deprotection of the monosaccharide-bearing thiocyanomethyl group at the anomeric position monitored by reversed-phase HPLC method.	Abualassal Q, Al Azzam KM, Jilani JA.	Biomed Chromatogr	10.1002/bmc.3699	2016
	Draft Genome Sequence of the Entomopathogenic Bacterium Bacillus pumilus 15.1, a Strain Highly Toxic to the Mediterranean Fruit Fly Ceratitis capitata.	Garcia-Ramon DC, Palma L, Berry C, Osuna A, Vilchez S.	Genome Announc	10.1128/genomea.01019-15	2015
	Sterilization and Disinfection: Ensuring Infection Control in Dental Practices.	Patino-Marin N, Villa Garcia LD, Aguirre Lopez EC, Medina-Solis CE, Martinez Zumaran A, Martinez Rider R, Marquez Preciado R, Rosales Garcia P, Salas Orozco MF.	Cureus	10.7759/cureus.79041	2025
	A novel intracellular nitrogen-fixing symbiosis made by Ustilago maydis and Bacillus spp.	Ruiz-Herrera J, Leon-Ramirez C, Vera-Nunez A, Sanchez-Arreguin A, Ruiz-Medrano R, Salgado-Lugo H, Sanchez-Segura L, Pena-Cabriales JJ.	New Phytol	10.1111/nph.13359	2015
Metabolism	2,5-Diketopiperazines produced by Bacillus pumilus during bacteriolysis of Arthrobacter citreus.	Brack C, Mikolasch A, Schauer F.	Mar Biotechnol (NY)	10.1007/s10126-014-9559-y	2014
Proteome	Cell physiology of the biotechnological relevant bacterium Bacillus pumilus-an omics-based approach.	Handtke S, Volland S, Methling K, Albrecht D, Becher D, Nehls J, Bongaerts J, Maurer KH, Lalk M, Liesegang H, Voigt B, Daniel R, Hecker M.	J Biotechnol	10.1016/j.jbiotec.2014.08.028	2014
Enzymology	Characterization and a point mutational approach of a psychrophilic lipase from an arctic bacterium, Bacillus pumilus.	Wi AR, Jeon SJ, Kim S, Park HJ, Kim D, Han SJ, Yim JH, Kim HW.	Biotechnol Lett	10.1007/s10529-014-1475-8	2014
	Bacillus pumilus Septic Arthritis in a Healthy Child.	Shivamurthy VM, Gantt S, Reilly C, Tilley P, Guzman J, Tucker L.	Can J Infect Dis Med Microbiol	10.1155/2016/3265037	2016
	Combined effects of exogenous enzymes and probiotic on Nile tilapia (Oreochromis niloticus) growth, intestinal morphology and microbiome	Adeoye AA, Yomla R, Jaramillo-Torres A, Rodiles A, Merrifield DL, Davies SJ.	Aquaculture	10.1016/j.aquaculture.2016.05.028	2016
	Biomedical Promise of Aspergillus Flavus-Biosynthesized Selenium Nanoparticles: A Green Synthesis Approach to Antiviral, Anticancer, Anti-Biofilm, and Antibacterial Applications.	Mohammed EJ, Abdelaziz AEM, Mekky AE, Mahmoud NN, Sharaf M, Al-Habibi MM, Khairy NM, Al-Askar AA, Youssef FS, Gaber MA, Saied E, AbdElgayed G, Metwally SA, Shoun AA.	Pharmaceuticals (Basel)	10.3390/ph17070915	2024
	Draft Genome Sequences of Five Spore-Forming Food Isolates of Bacillus pumilus.	de Jong A, van Heel AJ, Montalban-Lopez M, Krawczyk AO, Berendsen EM, Wells-Bennik M, Kuipers OP.	Genome Announc	10.1128/genomea.01539-14	2015
Phylogeny	Growth characteristics and biofilm formation of various spoilage bacteria isolated from fresh produce.	Bae YM, Zheng L, Hyun JE, Jung KS, Heu S, Lee SY.	J Food Sci	10.1111/1750-3841.12644	2014
	Electrospun Polycaprolactone/ZnO Nanocomposite Membranes with High Antipathogen Activity.	Permyakova ES, Manakhov AM, Kiryukhantsev-Korneev PV, Leybo DV, Konopatsky AS, Makarets YA, Filippovich SY, Ignatov SG, Shtansky DV.	Polymers (Basel)	10.3390/polym14245364	2022
	Use of systemic biofertilizers in sugarcane results in highly reproducible increments in yield and quality of harvests.	Aguado-Santacruz GA, Arreola-Tostado JM, Aguirre-Mancilla C, Garcia-Moya E.	Heliyon	10.1016/j.heliyon.2024.e28750	2024
	Electrical discharges in water induce spores' DNA damage.	Lamarche C, Da Silva C, Demol G, Dague E, Rols MP, Pillet F.	PLoS One	10.1371/journal.pone.0201448	2018
	A detailed biochemical characterization, toxicological assessment and molecular docking studies of Launaea fragilis: An important medicinal xero-halophyte.	Ahmed Khan D, Shahid A, Sherif AE, Aati HY, Abdullah M, Mehmood K, Hussain M, Basit A, Ahmad Ghalloo B, Ur Rehman Khan K.	Saudi Pharm J	10.1016/j.jsps.2023.04.028	2023
	Identification of Bacteria Associated with Post-Operative Wounds of Patients with the Use of Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry Approach.	Szultka-Mlynska M, Janiszewska D, Pomastowski P, Zloch M, Kupczyk W, Buszewski B.	Molecules	10.3390/molecules26165007	2021
	Agronomic advantage of bacterial biological nitrogen fixation on wheat plant growth under contrasting nitrogen and phosphorus regimes.	Aasfar A, Meftah Kadmiri I, Azaroual SE, Lemriss S, Mernissi NE, Bargaz A, Zeroual Y, Hilali A.	Front Plant Sci	10.3389/fpls.2024.1388775	2024
	Compilation of small ribosomal subunit RNA structures.	Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R.	Nucleic Acids Res	10.1093/nar/21.13.3025	1993
Metabolism	Novel cyanide electro-biodegradation using Bacillus pumilus ATCC 7061 in aqueous solution.	Ojaghi A, Shafaie Tonkaboni SZ, Shariati P, Doulati Ardejani F	J Environ Health Sci Eng	10.1007/s40201-018-0289-3	2018
Phylogeny	Bacillus safensis FO-36b and Bacillus pumilus SAFR-032: a whole genome comparison of two spacecraft assembly facility isolates.	Tirumalai MR, Stepanov VG, Wunsche A, Montazari S, Gonzalez RO, Venkateswaran K, Fox GE	BMC Microbiol	10.1186/s12866-018-1191-y	2018
Biotechnology	Dataset on potential large scale production of biosurfactant using Bacillus sp.	Heryani H, Putra MD	Data Brief	10.1016/j.dib.2017.05.037	2017
Phylogeny	Reclassification of Bacillus invictae as a later heterotypic synonym of Bacillus altitudinis.	Liu Y, Lai Q, Du J, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.000336	2015
Enzymology	Improving the thermoactivity and thermostability of pectate lyase from Bacillus pumilus for ramie degumming.	Liang C, Gui X, Zhou C, Xue Y, Ma Y, Tang SY	Appl Microbiol Biotechnol	10.1007/s00253-014-6091-y	2014
Genetics	An ICEBs1-like element may be associated with the extreme radiation and desiccation resistance of Bacillus pumilus SAFR-032 spores.	Tirumalai MR, Fox GE	Extremophiles	10.1007/s00792-013-0559-z	2013
Transcriptome	Candidate genes that may be responsible for the unusual resistances exhibited by Bacillus pumilus SAFR-032 spores.	Tirumalai MR, Rastogi R, Zamani N, O'Bryant Williams E, Allen S, Diouf F, Kwende S, Weinstock GM, Venkateswaran KJ, Fox GE	PLoS One	10.1371/journal.pone.0066012	2013
Enzymology	Protection of Bacillus pumilus spores by catalases.	Checinska A, Burbank M, Paszczynski AJ	Appl Environ Microbiol	10.1128/AEM.01211-12	2012
Pathogenicity	Sterilization of Bacillus pumilus spores using supercritical fluid carbon dioxide containing various modifier solutions.	Shieh E, Paszczynski A, Wai CM, Lang Q, Crawford RL	J Microbiol Methods	10.1016/j.mimet.2008.11.005	2008
Phylogeny	Recurrent isolation of hydrogen peroxide-resistant spores of Bacillus pumilus from a spacecraft assembly facility.	Kempf MJ, Chen F, Kern R, Venkateswaran K	Astrobiology	10.1089/ast.2005.5.391	2005
Enzymology	A novel glycerophosphodiesterase from Bacillus pumilus.	Kusser W, Fiedler F	FEBS Lett	10.1016/0014-5793(84)80100-3	1984
Metabolism	The release of petroleum hydrocarbons from a saline-sodic soil by the new biosurfactant-producing strain of Bacillus sp.	Kalvandi S, Garousin H, Pourbabaee AA, Farahbakhsh M	Sci Rep	10.1038/s41598-022-24321-3	2022
Phylogeny	Bacillus zhangzhouensis sp. nov. and Bacillus australimaris sp. nov.	Liu Y, Lai Q, Du J, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.000856	2015
Phylogeny	Bacillus invictae sp. nov., isolated from a health product.	Branquinho R, Sousa C, Osorio H, Meirinhos-Soares L, Lopes J, Carrico JA, Busse HJ, Abdulmawjood A, Klein G, Kampfer P, Pintado ME, Peixe LV	Int J Syst Evol Microbiol	10.1099/ijs.0.067850-0	2014
Phylogeny	Bacillus xiamenensis sp. nov., isolated from intestinal tract contents of a flathead mullet (Mugil cephalus).	Lai Q, Liu Y, Shao Z	Antonie Van Leeuwenhoek	10.1007/s10482-013-0057-4	2013

References

#2028	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#22900	A. G. O'DONNELL, J. R. NORRIS, R. C. W. BERKELEY, D. CLAUS, T. KANEKO, N. A. LOGAN, R. NOZAKI: Characterization of Bacillus subtilis, Bacillus pumilus, Bacillus licheniformis, and Bacillus amyloliquefaciens by Pyrolysis Gas-Liquid Chromatography, Deoxyribonucleic Acid-Deoxyribonucleic Acid Hybridization, Biochemical Tests, and API Systems. IJSEM 30: 448 - 459 1980 ( DOI 10.1099/00207713-30-2-448 )
#40218	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122057	Collection of Institut Pasteur ; Curators of the CIP; CIP 52.67
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bacillus pumilus (DSM 27, ATCC 7061, CCM 2144)

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