Name: Bacillus pumilus 272
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 756

Type strain:

Species: Bacillus pumilus

Strain Designation: 272

Culture col. no.: DSM 27, ATCC 7061, CCM 2144, IFO 12092, JCM 2508, NBRC 12092, NCIB 9369, NCTC 10337, NRS 272, BCRC 11706, CCUG 26015, CECT 29, CGMCC 1.3533, CIP 52.67, IAM 12469, IAM 14177, KCTC 3348, LMG 7132, NCIMB 9369, NRIC 1010, NRRL NRS-272, VKM B-508, VTT E-95572

Strain history: CCM 2144 <-- R. E. Gordon.

NCBI tax ID(s): 536229 (strain), 1408 (species)

Other strains from Bacillus pumilus

B. pumilus 734a, 735, DSM 354, ATCC 71, CCM ...
B. pumilus 734, 736, DSM 355, ATCC 72, CCM ...
B. pumilus DSM 361, ATCC 14884, CCM 2218, ...
B. pumilus E 601, CCUG 24142, DSM 492, ATCC ...
B. pumilus 29, DSM 766
B. pumilus DSM 1794, NCIB 10822, CN 607
B. pumilus 236, DSM 2893, ATCC 6631, IFO 12110, ...
B. pumilus G1R, DSM 5549, HER 1182
B. pumilus DSM 8786, DSM 46309, IMET 11026, ...
B. pumilus ES 20, DSM 13835
B. pumilus ES1-184-2, DSM 30537
B. pumilus ES1-215-1, DSM 30550
B. pumilus ES2-8a2, DSM 30596
B. pumilus ES2-12c1, DSM 30606
B. pumilus FR2-W6Ac, DSM 30704
B. pumilus FR2-W7Aa, DSM 30708
B. pumilus FR2-W7Ab, DSM 30709
B. pumilus FR2-W8Aa, DSM 30714
B. pumilus W17/3, DSM 30786
B. pumilus ES2-W4c1, DSM 30628
B. pumilus FR2-S1Aa, DSM 30670
B. pumilus FR2-S4Aa, DSM 30672
B. pumilus FR2-S4Ab, DSM 30673
B. pumilus FR2-S7Ab, DSM 30678
B. pumilus FR2-S7Ac, DSM 30679
B. pumilus FR2-S11Aa-b, DSM 30681
B. pumilus FR2-W6Ab, DSM 30703
B. pumilus FR1-11con, DSM 30720
B. pumilus W20/5, DSM 30789
B. pumilus MW15/1, DSM 30805
B. pumilus TS1/1, DSM 30806
B. pumilus KO_PS 3, DSM 30833
B. pumilus W2, DSM 100617
B. pumilus T4_3, DSM 100541
B. pumilus DSM 30004, ATCC 15716, DSM 15573, ...
B. pumilus b17_1, DSM 31005
B. pumilus T2_3, DSM 30977
B. pumilus T2_44, DSM 30997
B. pumilus Stev13, DSM 103049
B. pumilus Stev38, DSM 103053
B. pumilus D35_1, DSM 103757
B. pumilus C8_12, DSM 103869
B. pumilus CIP 102756
B. pumilus CIP 51.18
B. pumilus CIP 102496
B. pumilus CIP 52.42
B. pumilus CIP 101996
B. pumilus CIP 102081
B. pumilus T3_14, DSM 103904
B. pumilus CCUG 397
B. pumilus CCUG 4626
B. pumilus CCUG 21924
B. pumilus CCUG 26531
B. pumilus CCUG 27243
B. pumilus CCUG 27263
B. pumilus CCUG 28267 B
B. pumilus CCUG 30128
B. pumilus CCUG 30686
B. pumilus CCUG 32666
B. pumilus CCUG 34244
B. pumilus CCUG 35011
B. pumilus CCUG 41443
B. pumilus CCUG 43804
B. pumilus CCUG 44877
B. pumilus CCUG 44940
B. pumilus CCUG 47302
B. pumilus CCUG 50373 A
B. pumilus CCUG 56623
B. pumilus CCUG 66887

Section

Bacillus pumilus 272 is a mesophilic human pathogen of the family Bacillaceae.

human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	25-08-2022 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Bacillota
	Class	Bacilli
	Order	Caryophanales
	Family	Bacillaceae
	Genus	Bacillus
	Species	Bacillus pumilus
	Full Scientific Name (PNU)	Bacillus pumilus Meyer and Gottheil 1901 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #2028]

Caption:

DSM 27 Bacillus pumilus

[Ref.: #2028]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2028]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #2028]

Culture medium growth

[Ref.: #2028]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2028]

Culture medium composition

expand / minimize

[Ref.: #40218]

Culture medium

MEDIUM 29- Brain heart agar

[Ref.: #40218]

Culture medium growth

[Ref.: #40218]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #2028]	growth	30 °C
[Ref.: #40218]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #2028]	Temperature range	mesophilic
[Ref.: #40218]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #22900]	dextrin ChEBI	-	growth
[Ref.: #22900]	galactose ChEBI	+	growth
[Ref.: #22900]	gluconate ChEBI	+	growth
[Ref.: #22900]	glycogen ChEBI	-	growth
[Ref.: #22900]	L-arabinose ChEBI	+	growth
[Ref.: #22900]	N-acetyl-D-glucosamine ChEBI	+	growth
[Ref.: #22900]	nitrate ChEBI	-	reduction
[Ref.: #22900]	rhamnose ChEBI	-	growth
[Ref.: #22900]	starch ChEBI	-	growth

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #22900]		alpha-glucosidase	-	3.2.1.20
[Ref.: #22900]		arginine dihydrolase	-	3.5.3.6

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2028]	Pathogenicity (human)	yes, in single cases
[Ref.: #2028]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Bacillus pumilus 16S ribosomal RNA gene, partial sequence	DQ105967	1449	ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus strain 001T 16S ribosomal RNA gene, partial sequence	FJ477095	650	ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus clone Bpumi-1F 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF478070	416	ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus strain ATCC 7061 16S ribosomal RNA gene, partial sequence	AY876289	1434	ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus strain ATCC 7061 16S ribosomal RNA gene, partial sequence	GQ911554	803	ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus strain ATCC 7061 16S ribosomal RNA gene, partial sequence	JQ424887	1456	ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus strain CIP 52.67 16S ribosomal RNA gene, partial sequence	AY876045	1065	ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus partial 16S rRNA gene, isolate OS-70	AM237370	1459	ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus strain DSMZ27 16S ribosomal RNA gene, partial sequence	AY456263	1481	ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus gene for 16S rRNA, partial sequence	AB006934	274	ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus gene for 16S rRNA, partial sequence	AB271753	1474	ENA	1408 tax ID	*
[Ref.: #20218]	B.pumilus 16S ribosomal RNA	X60637	1427	ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus strain NRRL NRS-272 16S ribosomal RNA gene, partial sequence	EU138517	1167	ENA	1408 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bacillus pumilus NCTC10337	GCA_900186955	complete	GenBank	1408 tax ID	*
[Ref.: #66792]	Bacillus pumilus ATCC 7061 ATCC 7061	GCA_000172815	contig	GenBank	536229 tax ID	*
[Ref.: #66792]	Bacillus pumilus ATCC 7061	536229.4	wgs	PATRIC	536229 tax ID	*
[Ref.: #66792]	Bacillus pumilus strain NCTC10337	1408.193	complete	PATRIC	1408 tax ID	*
[Ref.: #66792]	Bacillus pumilus NCTC 10337	2880148112	complete	JGI IMG/M	1408 tax ID	*
[Ref.: #66792]	Bacillus pumilus ATCC 7061	642791616	draft	JGI IMG/M	536229 tax ID	*

[Ref.: #2028]	GC-content	41.9 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #2028]	GC-content	40.7 mol%	Buoyant density centrifugation (BD)

Availability in culture collections External links

[Ref.: #2028]

Culture collection no.

DSM 27, ATCC 7061, CCM 2144, IFO 12092, JCM 2508, NBRC 12092, NCIB 9369, NCTC 10337, NRS 272, BCRC 11706, CCUG 26015, CECT 29, CGMCC 1.3533, CIP 52.67, IAM 12469, IAM 14177, KCTC 3348, LMG 7132, NCIMB 9369, NRIC 1010, NRRL NRS-272, VKM B-508, VTT E-95572

[Ref.: #20218]

Associated Passport(s) in StrainInfo

4986, 4980, 4982, 4988, 4989, 333138, 4993, 4994

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Enzymology	A novel glycerophosphodiesterase from Bacillus pumilus.	Kusser W, Fiedler F	FEBS Lett	10.1016/0014-5793(84)80100-3	1984	*
Phylogeny	Recurrent isolation of hydrogen peroxide-resistant spores of Bacillus pumilus from a spacecraft assembly facility.	Kempf MJ, Chen F, Kern R, Venkateswaran K	Astrobiology	10.1089/ast.2005.5.391	2005	*
Pathogenicity	Sterilization of Bacillus pumilus spores using supercritical fluid carbon dioxide containing various modifier solutions.	Shieh E, Paszczynski A, Wai CM, Lang Q, Crawford RL	J Microbiol Methods	10.1016/j.mimet.2008.11.005	2008	*
Enzymology	Protection of Bacillus pumilus spores by catalases.	Checinska A, Burbank M, Paszczynski AJ	Appl Environ Microbiol	10.1128/AEM.01211-12	2012	*
Transcriptome	Candidate genes that may be responsible for the unusual resistances exhibited by Bacillus pumilus SAFR-032 spores.	Tirumalai MR, Rastogi R, Zamani N, O'Bryant Williams E, Allen S, Diouf F, Kwende S, Weinstock GM, Venkateswaran KJ, Fox GE	PLoS One	10.1371/journal.pone.0066012	2013	*
Genetics	An ICEBs1-like element may be associated with the extreme radiation and desiccation resistance of Bacillus pumilus SAFR-032 spores.	Tirumalai MR, Fox GE	Extremophiles	10.1007/s00792-013-0559-z	2013	*
Phylogeny	Bacillus xiamenensis sp. nov., isolated from intestinal tract contents of a flathead mullet (Mugil cephalus).	Lai Q, Liu Y, Shao Z	Antonie Van Leeuwenhoek	10.1007/s10482-013-0057-4	2013	*
Phylogeny	Bacillus invictae sp. nov., isolated from a health product.	Branquinho R, Sousa C, Osorio H, Meirinhos-Soares L, Lopes J, Carrico JA, Busse HJ, Abdulmawjood A, Klein G, Kampfer P, Pintado ME, Peixe LV	Int J Syst Evol Microbiol	10.1099/ijs.0.067850-0	2014	*
Enzymology	Improving the thermoactivity and thermostability of pectate lyase from Bacillus pumilus for ramie degumming.	Liang C, Gui X, Zhou C, Xue Y, Ma Y, Tang SY	Appl Microbiol Biotechnol	10.1007/s00253-014-6091-y	2014	*
Phylogeny	Reclassification of Bacillus invictae as a later heterotypic synonym of Bacillus altitudinis.	Liu Y, Lai Q, Du J, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.000336	2015	*
Phylogeny	Bacillus zhangzhouensis sp. nov. and Bacillus australimaris sp. nov.	Liu Y, Lai Q, Du J, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.000856	2015	*
Biotechnology	Dataset on potential large scale production of biosurfactant using Bacillus sp.	Heryani H, Putra MD	Data Brief	10.1016/j.dib.2017.05.037	2017	*
Phylogeny	Bacillus safensis FO-36b and Bacillus pumilus SAFR-032: a whole genome comparison of two spacecraft assembly facility isolates.	Tirumalai MR, Stepanov VG, Wunsche A, Montazari S, Gonzalez RO, Venkateswaran K, Fox GE	BMC Microbiol	10.1186/s12866-018-1191-y	2018	*
Metabolism	Novel cyanide electro-biodegradation using Bacillus pumilus ATCC 7061 in aqueous solution.	Ojaghi A, Shafaie Tonkaboni SZ, Shariati P, Doulati Ardejani F	J Environ Health Sci Eng	10.1007/s40201-018-0289-3	2018	*

References

#2028

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#22900

A. G. O'DONNELL, J. R. NORRIS, R. C. W. BERKELEY, D. CLAUS, T. KANEKO, N. A. LOGAN, R. NOZAKI: Characterization of Bacillus subtilis, Bacillus pumilus, Bacillus licheniformis, and Bacillus amyloliquefaciens by Pyrolysis Gas-Liquid Chromatography, Deoxyribonucleic Acid-Deoxyribonucleic Acid Hybridization, Biochemical Tests, and API Systems. IJSEM 30: 448 - 459 1980 ( DOI 10.1099/00207713-30-2-448 )

#40218 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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