Name: Bacillus pumilus 272
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 756

Type strain:

Species: Bacillus pumilus

Strain Designation: 272

Culture col. no.: DSM 27, ATCC 7061, CCM 2144, IFO 12092, JCM 2508, NBRC 12092, NCIB 9369, NCTC 10337, NRS 272, BCRC 11706, CCUG 26015, CECT 29, CGMCC 1.3533, CIP 52.67, IAM 12469, IAM 14177, KCTC 3348, LMG 7132, NCIMB 9369, NRIC 1010, NRRL NRS-272, VKM B-508, VTT E-95572, NCDO 1766

Strain history: CIP <- 1952, R.E. Gordon, New Jersey Agri. Exper. Stat., New Brunswick, USA: strain 272 <- 1914, F. Löhnis <- Kràl Collection, Vienna, Austria

NCBI tax ID(s): 536229 (strain), 1408 (species)

SI-ID 92134

LMG 7132, ATCC 7061, CCM 2144, CECT 29, DSM 27, IAM 12469, IFO 12092, JCM 2508, LMG 18928, NCFB 1766, NCIB 9369, NCTC 10337, CCUG 26015, CCUG 26016, NCDO 1766, CCRC 11706, NCIMB 9369, VKM B-508, LMD 48.24, CCRC 11065, NRRL NRS-272, NCIM 9369, KCTC 3348, NBRC 12092, NCCB 48024, BCRC 11706, HAMBI 1826, BCRC 11065, CCT 0513, IAM 14177, KCTC 3855, KACC 10917, CGMCC 1.3533, VTT E-95572, IAM 567, CIP 52.67

Special Collections

Other strains from Bacillus pumilus

Section

When using BacDive for research please cite our paper

Bacillus pumilus 272 is an obligate aerobe, spore-forming, mesophilic bacterium of the family Bacillaceae.

Gram-positive
motile
rod-shaped
spore-forming
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Bacillus*
	Species	**Bacillus pumilus**
	Full Scientific Name (LPSN)	Bacillus pumilus Meyer and Gottheil 1901 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #122057]	Gram stain	positive

[Ref.: #122057]	Cell shape	rod-shaped

[Ref.: #122057]	Motility	yes

Multimedia content

[Ref.: #2028]

Caption:

DSM 27 Bacillus pumilus

[Ref.: #2028]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2028]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #2028]

Culture medium growth

[Ref.: #2028]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2028]

Culture medium composition

expand / minimize

[Ref.: #40218]

Culture medium

MEDIUM 29- Brain heart agar

[Ref.: #40218]

Culture medium growth

[Ref.: #40218]

Culture medium composition

expand / minimize

[Ref.: #122057]

Culture medium

CIP Medium 29

[Ref.: #122057]

Culture medium growth

[Ref.: #122057]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #2028]		growth	30 °C
[Ref.: #40218]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #122057]		growth	22-45 °C
[Ref.: #122057]	no	growth	5 °C
[Ref.: #122057]	no	growth	10 °C

	pH	Kind of pH		pH
[Ref.: #122057]			growth	6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #122057]

Oxygen tolerance

obligate aerobe

[Ref.: #125438]

Ability of spore formation

yes Confidence in %95.325

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #122057]		NaCl		growth	0-10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #22900]	dextrin ChEBI	-	growth
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122057]	esculin ChEBI	+	hydrolysis
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #22900]	galactose ChEBI	+	growth
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #22900]	gluconate ChEBI	+	growth
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #22900]	glycogen ChEBI	-	growth
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #22900]	L-arabinose ChEBI	+	growth
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #22900]	N-acetyl-D-glucosamine ChEBI	+	growth
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #22900]	nitrate ChEBI	-	reduction
[Ref.: #122057]	nitrate ChEBI	-	reduction
[Ref.: #122057]	nitrate ChEBI	-	respiration
[Ref.: #122057]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #22900]	rhamnose ChEBI	-	growth
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #22900]	starch ChEBI	-	growth
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #122057]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #122057]		acetoin ChEBI	+
[Ref.: #122057]		glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122057]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #22900]	alpha-glucosidase	-	3.2.1.20
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122057]	amylase	-
[Ref.: #22900]	arginine dihydrolase	-	3.5.3.6
[Ref.: #122057]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122057]	caseinase	+	3.4.21.50
[Ref.: #122057]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #122057]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122057]	gelatinase	+
[Ref.: #122057]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #122057]	lipase	+
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122057]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #122057]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122057]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122057]	tween esterase	+
[Ref.: #122057]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #122057]	11827	not determinedn.d.	+	-	-	+	+	-	-	-	-	-	+	+	+	-	-	-	-	+	-	-	-	+	-	+	+	+	+	-	-	-	+	+	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122057]	2984	not determinedn.d.	+	+	+	+	+	-	-	+	-	-	-	-	-	-	-	+	-	+	+	+	+	+	-	-	-	-	-	-	-	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	+	-	-	-	-	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	+	-	-	-	-	-	+	+	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122057]	12664	-	+	+	+	-	-	-	-	-	+	+	-	-	-	-	-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AM237370 (>99% sequence identity) for Bacillus from Microbeatlas

Aquatic Samples	3497
Soil Samples	7187
Animal Samples	6743
Plant Samples	2902
Total Samples	20329

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2028]	Pathogenicity (human)	yes, in single cases
[Ref.: #2028]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122057]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #124043]	Bacillus pumilus strain ATCC 7061 16S ribosomal RNA gene, partial sequence.	OQ876682	1431	GenBank ENA	1408 tax ID	*
[Ref.: #124043]	Bacillus pumilus strain ATCC 7061 16S ribosomal RNA gene, partial sequence.	OQ921696	1380	GenBank ENA	1408 tax ID	*
[Ref.: #124043]	Bacillus pumilus strain CIP 52.67 16S ribosomal RNA gene, partial sequence.	OQ928766	707	GenBank ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus 16S ribosomal RNA gene, partial sequence	DQ105967	1449	GenBank ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus strain 001T 16S ribosomal RNA gene, partial sequence	FJ477095	650	GenBank ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus clone Bpumi-1F 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF478070	416	GenBank ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus strain ATCC 7061 16S ribosomal RNA gene, partial sequence	AY876289	1434	GenBank ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus strain ATCC 7061 16S ribosomal RNA gene, partial sequence	GQ911554	803	GenBank ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus strain ATCC 7061 16S ribosomal RNA gene, partial sequence	JQ424887	1456	GenBank ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus strain CIP 52.67 16S ribosomal RNA gene, partial sequence	AY876045	1065	GenBank ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus partial 16S rRNA gene, isolate OS-70	AM237370	1459	GenBank ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus strain DSMZ27 16S ribosomal RNA gene, partial sequence	AY456263	1481	GenBank ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus gene for 16S rRNA, partial sequence	AB006934	274	GenBank ENA	1408 tax ID	*
[Ref.: #20218]	Bacillus pumilus gene for 16S rRNA, partial sequence	AB271753	1474	GenBank ENA	1408 tax ID	*
[Ref.: #20218]	B.pumilus 16S ribosomal RNA	X60637	1427	GenBank ENA	1408 tax ID	*
[Ref.: #124043]	Bacillus pumilus strain CIP 52.67 16S ribosomal RNA gene, partial sequence.	OQ456136	432	GenBank ENA	1408 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bacillus pumilus ATCC 7061	GCA_000172815	contig	GenBank ENA	536229 tax ID
[Ref.: #66792]	Bacillus pumilus NCTC10337	GCA_900186955	complete	GenBank ENA	1408 tax ID	*
[Ref.: #66792]	Bacillus pumilus ATCC 7061	536229.4	wgs	PATRIC	536229 tax ID	*
[Ref.: #66792]	Bacillus pumilus strain NCTC10337	1408.193	complete	PATRIC	1408 tax ID	*
[Ref.: #66792]	Bacillus pumilus NCTC 10337	2880148112	complete	JGI IMG/M	1408 tax ID	*
[Ref.: #66792]	Bacillus pumilus ATCC 7061	642791616	draft	JGI IMG/M	536229 tax ID	*

[Ref.: #2028]	GC-content	41.9 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #2028]	GC-content	40.7 mol%	Buoyant density centrifugation (BD)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus pumilus NCTC10337 NCBI: GCA_900186955.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	77.48	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	92.213	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	70.451	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	95.325	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	94.312	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	86.531	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bacillus pumilus NCTC10337 NCBI: GCA_900186955
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	53.1
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	63.8
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	variable	75.6
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	85.1

Availability in culture collections External links

[Ref.: #2028]

Culture collection no.

DSM 27, ATCC 7061, CCM 2144, IFO 12092, JCM 2508, NBRC 12092, NCIB 9369, NCTC 10337, NRS 272, BCRC 11706, CCUG 26015, CECT 29, CGMCC 1.3533, CIP 52.67, IAM 12469, IAM 14177, KCTC 3348, LMG 7132, NCIMB 9369, NRIC 1010, NRRL NRS-272, VKM B-508, VTT E-95572, NCDO 1766

[Ref.: #70430]

SI-ID 92134

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Novel cyanide electro-biodegradation using Bacillus pumilus ATCC 7061 in aqueous solution.	Ojaghi A, Shafaie Tonkaboni SZ, Shariati P, Doulati Ardejani F	J Environ Health Sci Eng	10.1007/s40201-018-0289-3	2018	*
Phylogeny	Bacillus safensis FO-36b and Bacillus pumilus SAFR-032: a whole genome comparison of two spacecraft assembly facility isolates.	Tirumalai MR, Stepanov VG, Wunsche A, Montazari S, Gonzalez RO, Venkateswaran K, Fox GE	BMC Microbiol	10.1186/s12866-018-1191-y	2018	*
Biotechnology	Dataset on potential large scale production of biosurfactant using Bacillus sp.	Heryani H, Putra MD	Data Brief	10.1016/j.dib.2017.05.037	2017	*
Phylogeny	Bacillus zhangzhouensis sp. nov. and Bacillus australimaris sp. nov.	Liu Y, Lai Q, Du J, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.000856	2015	*
Phylogeny	Reclassification of Bacillus invictae as a later heterotypic synonym of Bacillus altitudinis.	Liu Y, Lai Q, Du J, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.000336	2015	*
Enzymology	Improving the thermoactivity and thermostability of pectate lyase from Bacillus pumilus for ramie degumming.	Liang C, Gui X, Zhou C, Xue Y, Ma Y, Tang SY	Appl Microbiol Biotechnol	10.1007/s00253-014-6091-y	2014	*
Phylogeny	Bacillus invictae sp. nov., isolated from a health product.	Branquinho R, Sousa C, Osorio H, Meirinhos-Soares L, Lopes J, Carrico JA, Busse HJ, Abdulmawjood A, Klein G, Kampfer P, Pintado ME, Peixe LV	Int J Syst Evol Microbiol	10.1099/ijs.0.067850-0	2014	*
Phylogeny	Bacillus xiamenensis sp. nov., isolated from intestinal tract contents of a flathead mullet (Mugil cephalus).	Lai Q, Liu Y, Shao Z	Antonie Van Leeuwenhoek	10.1007/s10482-013-0057-4	2013	*
Genetics	An ICEBs1-like element may be associated with the extreme radiation and desiccation resistance of Bacillus pumilus SAFR-032 spores.	Tirumalai MR, Fox GE	Extremophiles	10.1007/s00792-013-0559-z	2013	*
Transcriptome	Candidate genes that may be responsible for the unusual resistances exhibited by Bacillus pumilus SAFR-032 spores.	Tirumalai MR, Rastogi R, Zamani N, O'Bryant Williams E, Allen S, Diouf F, Kwende S, Weinstock GM, Venkateswaran KJ, Fox GE	PLoS One	10.1371/journal.pone.0066012	2013	*
Enzymology	Protection of Bacillus pumilus spores by catalases.	Checinska A, Burbank M, Paszczynski AJ	Appl Environ Microbiol	10.1128/AEM.01211-12	2012	*
Pathogenicity	Sterilization of Bacillus pumilus spores using supercritical fluid carbon dioxide containing various modifier solutions.	Shieh E, Paszczynski A, Wai CM, Lang Q, Crawford RL	J Microbiol Methods	10.1016/j.mimet.2008.11.005	2008	*
Phylogeny	Recurrent isolation of hydrogen peroxide-resistant spores of Bacillus pumilus from a spacecraft assembly facility.	Kempf MJ, Chen F, Kern R, Venkateswaran K	Astrobiology	10.1089/ast.2005.5.391	2005	*
Enzymology	A novel glycerophosphodiesterase from Bacillus pumilus.	Kusser W, Fiedler F	FEBS Lett	10.1016/0014-5793(84)80100-3	1984	*
Metabolism	The release of petroleum hydrocarbons from a saline-sodic soil by the new biosurfactant-producing strain of Bacillus sp.	Kalvandi S, Garousin H, Pourbabaee AA, Farahbakhsh M	Sci Rep	10.1038/s41598-022-24321-3	2022	*

References

#2028

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#22900

A. G. O'DONNELL, J. R. NORRIS, R. C. W. BERKELEY, D. CLAUS, T. KANEKO, N. A. LOGAN, R. NOZAKI: Characterization of Bacillus subtilis, Bacillus pumilus, Bacillus licheniformis, and Bacillus amyloliquefaciens by Pyrolysis Gas-Liquid Chromatography, Deoxyribonucleic Acid-Deoxyribonucleic Acid Hybridization, Biochemical Tests, and API Systems. IJSEM 30: 448 - 459 1980 ( DOI 10.1099/00207713-30-2-448 )

#40218 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#70430

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92134.1 )

#122057 Collection of Institut Pasteur ; Curators of the CIP; CIP 52.67

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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