Strain identifier
BacDive ID: 755
Type strain: 
Species: Bacillus pumilus
Strain Designation: 236, 726
Strain history: CIP <- 1952, N.R. Smith, New Jersey Agri. Stat., USA: strain 236 <- AMNH: strain 726 <- W. Ford, Bacillus mesentericus
NCBI tax ID(s): 1408 (species)
version 8.1 (current version)
General
@ref: 1159
BacDive-ID: 755
DSM-Number: 2893
keywords: 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive, motile, rod-shaped, human pathogen
description: Bacillus pumilus 236 is a spore-forming, mesophilic, Gram-positive human pathogen of the family Bacillaceae.
NCBI tax id
- NCBI tax id: 1408
- Matching level: species
strain history
| @ref | history |
|---|---|
| 1159 | <- Schering AG <- ATCC <- N.R. Smith, 236 <- AMNH 726 <- W. Ford (Bacillus mesentericus) |
| 122058 | CIP <- 1952, N.R. Smith, New Jersey Agri. Stat., USA: strain 236 <- AMNH: strain 726 <- W. Ford, Bacillus mesentericus |
doi: 10.13145/bacdive755.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus pumilus
- full scientific name: Bacillus pumilus Meyer and Gottheil 1901 (Approved Lists 1980)
@ref: 1159
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus pumilus
full scientific name: Bacillus pumilus Meyer and Gottheil 1901
strain designation: 236, 726
type strain: no
Morphology
cell morphology
- @ref: 122058
- gram stain: positive
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 1159 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| 41302 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
| 122058 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 | |
| 122058 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 1159 | positive | growth | 26 | mesophilic |
| 41302 | positive | growth | 30 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 122058
- spore formation: yes
API biotype100
| @ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_885.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_17;97_607;98_698;99_885&stattab=map
- Last taxonomy: Bacillus
- 16S sequence: AB680241
- Sequence Identity:
- Total samples: 20329
- soil counts: 7187
- aquatic counts: 3497
- animal counts: 6743
- plant counts: 2902
Safety information
risk assessment
| @ref | pathogenicity human | biosafety level | biosafety level comment |
|---|---|---|---|
| 1159 | yes, in single cases | 1 | Risk group (German classification) |
| 122058 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 20218
- description: Bacillus pumilus gene for 16S rRNA, partial sequence, strain: NBRC 12110
- accession: AB680241
- length: 1474
- database: ena
- NCBI tax ID: 1408
External links
@ref: 1159
culture collection no.: DSM 2893, ATCC 6631, IFO 12110, NBRC 12110, CIP 52.68, ATCC 8471, NRRL: NRS-236
straininfo link
- @ref: 70429
- straininfo: 45469
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1159 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2893) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2893 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 41302 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/13300 | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 70429 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45469.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 122058 | Curators of the CIP | Collection of Institut Pasteur (CIP 52.68) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2052.68 |