Name: Marisediminicola antarctica ZS314
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7507

Type strain:

Species: Marisediminicola antarctica

Strain Designation: ZS314

Culture col. no.: DSM 22350, CCTCC AB 209077, JCM 19552, NBRC 109630

Strain history: DSM 22350 <-- H.-R. Li ZS314 <-- H.-B. Teng and H.-R. Li.

NCBI tax ID(s): 674079 (species)

SI-ID 371117

DSM 22350

Section

Marisediminicola antarctica ZS314 is an aerobe, psychrophilic, Gram-positive bacterium that was isolated from marine sediment of intertidal zones.

Gram-positive
motile
rod-shaped
aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Marisediminicola*
	Species	**Marisediminicola antarctica**
	Full Scientific Name (LPSN)	Marisediminicola antarctica Li et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29688]	Gram stain	positive

[Ref.: #29688]	Cell length	0.7-0.9 µm

[Ref.: #29688]	Cell width	0.2-0.3 µm

[Ref.: #29688]	Cell shape	rod-shaped

[Ref.: #29688]	Motility	yes

[Ref.: #29688]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16307]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16307]

Culture medium growth

[Ref.: #16307]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16307]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16307]	growth	15-20 °C
[Ref.: #29688]	growth	0-26 °C
[Ref.: #29688]	optimum	18-23 °C
[Ref.: #67770]	growth	20 °C

[Ref.: #16307]	Temperature range	psychrophilic
[Ref.: #29688]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #29688]			optimum	06-08
[Ref.: #29688]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29688]

Oxygen tolerance

aerobe

[Ref.: #29688]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29688]		NaCl		growth	0-6	%
[Ref.: #29688]		NaCl		optimum	02-04	%

[Ref.: #29688]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-10

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29688]		esculin ChEBI	+	hydrolysis

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29688]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16307]	Sample type/isolated from	marine sediment of intertidal zones
[Ref.: #16307]	Geographic location (country and/or sea, region)	Zhongshan Station (69° 22' 13'' S 76° 21' 41'' E)
[Ref.: #16307]	Continent	Australia and Oceania
[Ref.: #16307]	Geographic location	-69.3703°/76.3614°

[Ref.: #67770]	Sample type/isolated from	Sandy intertidal sediment from the coastal area
[Ref.: #67770]	Geographic location (country and/or sea, region)	Chinese Antarctic Zhongshan Station
[Ref.: #67770]	Country	Antarctica
[Ref.: #67770]	Country ISO 3 Code	ATA
[Ref.: #67770]	Continent	Antarctica
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Tidal flat

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16307]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16307]	Marisediminicola antarctica strain ZS314 16S ribosomal RNA gene, partial sequence	GQ496083	1480	ENA	674079 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marisediminicola antarctica ZS314	GCA_009930795	complete	GenBank	674079 tax ID	*

[Ref.: #16307]	GC-content	67.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29688]	GC-content	67 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marisediminicola antarctica ZS314 NCBI: GCA_009930795.1
[Ref.: #69480]	motile	yes	73.329	yes
[Ref.: #69480]	flagellated	no	93.656	no
[Ref.: #69480]	gram-positive	yes	92.885	yes
[Ref.: #69480]	anaerobic	no	99.19	no
[Ref.: #69480]	aerobic	yes	94.762	yes
[Ref.: #69480]	halophile	no	85.041	no
[Ref.: #69480]	spore-forming	no	95.345	yes
[Ref.: #69480]	glucose-util	yes	89.999	no
[Ref.: #69480]	thermophile	no	98.124	no
[Ref.: #69480]	glucose-ferment	no	90.322	no

Availability in culture collections External links

[Ref.: #16307]

Culture collection no.

DSM 22350, CCTCC AB 209077, JCM 19552, NBRC 109630

[Ref.: #76953]

SI-ID 371117

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marisediminicola senii sp. nov. isolated from Queen Maud Land, Antarctica.	Jani K, Kajale S, Shetye M, Palkar S, Sharma A	Int J Syst Evol Microbiol	10.1099/ijsem.0.004641	2021	*
Genetics	Biosynthetic Potential of a Novel Antarctic Actinobacterium Marisediminicola antarctica ZS314(T) Revealed by Genomic Data Mining and Pigment Characterization.	Liao L, Su S, Zhao B, Fan C, Zhang J, Li H, Chen B	Mar Drugs	10.3390/md17070388	2019	*
Phylogeny	Glaciihabitans tibetensis gen. nov., sp. nov., a psychrotolerant bacterium of the family Microbacteriaceae, isolated from glacier ice water.	Li AH, Liu HC, Xin YH, Kim SG, Zhou YG	Int J Syst Evol Microbiol	10.1099/ijs.0.052670-0	2013	*
Phylogeny	Marisediminicola antarctica gen. nov., sp. nov., an actinobacterium isolated from the Antarctic.	Li HR, Yu Y, Luo W, Zeng YX	Int J Syst Evol Microbiol	10.1099/ijs.0.018754-0	2009	*

References

#16307

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22350

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29688

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26073 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76953

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID371117.1 )

#26073

IJSEM 2535 2010 ( DOI 10.1099/ijs.0.018754-0 , PubMed 19965991 )

* These data were automatically processed and therefore are not curated

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