Strain identifier

BacDive ID: 7507

Type strain: Yes

Species: Marisediminicola antarctica

Strain Designation: ZS314

Strain history: DSM 22350 <-- H.-R. Li ZS314 <-- H.-B. Teng and H.-R. Li.

NCBI tax ID(s): 674079 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16307

BacDive-ID: 7507

DSM-Number: 22350

keywords: genome sequence, 16S sequence, Bacteria, aerobe, psychrophilic, Gram-positive, motile, rod-shaped

description: Marisediminicola antarctica ZS314 is an aerobe, psychrophilic, Gram-positive bacterium that was isolated from marine sediment of intertidal zones.

NCBI tax id

  • NCBI tax id: 674079
  • Matching level: species

strain history

@refhistory
16307<- H. Li, Polar Res. Institute of China, Shanghai, PR China; ZS314 <- H. Teng and H. Li
67770DSM 22350 <-- H.-R. Li ZS314 <-- H.-B. Teng and H.-R. Li.

doi: 10.13145/bacdive7507.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Marisediminicola
  • species: Marisediminicola antarctica
  • full scientific name: Marisediminicola antarctica Li et al. 2010

@ref: 16307

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Marisediminicola

species: Marisediminicola antarctica

full scientific name: Marisediminicola antarctica Li et al. 2010

strain designation: ZS314

type strain: yes

Morphology

cell morphology

  • @ref: 29688
  • gram stain: positive
  • cell length: 0.7-0.9 µm
  • cell width: 0.2-0.3 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 29688
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 16307
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16307positivegrowth15-20psychrophilic
29688positivegrowth0-26
29688positiveoptimum18-23psychrophilic
67770positivegrowth20psychrophilic

culture pH

@refabilitytypepHPH range
29688positivegrowth05-10alkaliphile
29688positiveoptimum06-08

Physiology and metabolism

oxygen tolerance

  • @ref: 29688
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29688
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
29688NaClpositivegrowth0-6 %
29688NaClpositiveoptimum02-04 %

observation

@refobservation
29688aggregates in chains
67770quinones: MK-10

metabolite utilization

  • @ref: 29688
  • Chebi-ID: 4853
  • metabolite: esculin
  • utilization activity: +
  • kind of utilization tested: hydrolysis

enzymes

  • @ref: 29688
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcontinentlatitudelongitudecountryorigin.country
16307marine sediment of intertidal zonesZhongshan Station (69° 22' 13'' S 76° 21' 41'' E)Australia and Oceania-69.370376.3614
67770Sandy intertidal sediment from the coastal areaChinese Antarctic Zhongshan StationAntarcticaAntarcticaATA

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment
#Environmental#Terrestrial#Tidal flat

Safety information

risk assessment

  • @ref: 16307
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16307
  • description: Marisediminicola antarctica strain ZS314 16S ribosomal RNA gene, partial sequence
  • accession: GQ496083
  • length: 1480
  • database: ena
  • NCBI tax ID: 674079

Genome sequences

  • @ref: 66792
  • description: Marisediminicola antarctica ZS314
  • accession: GCA_009930795
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 674079

GC content

@refGC-contentmethod
1630767.3high performance liquid chromatography (HPLC)
2968867

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes73.329yes
flagellatedno93.656no
gram-positiveyes92.885yes
anaerobicno99.19no
aerobicyes94.762yes
halophileno85.041no
spore-formingno95.345yes
glucose-utilyes89.999no
thermophileno98.124no
glucose-fermentno90.322no

External links

@ref: 16307

culture collection no.: DSM 22350, CCTCC AB 209077, JCM 19552, NBRC 109630

straininfo link

  • @ref: 76953
  • straininfo: 371117

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19965991Marisediminicola antarctica gen. nov., sp. nov., an actinobacterium isolated from the Antarctic.Li HR, Yu Y, Luo W, Zeng YXInt J Syst Evol Microbiol10.1099/ijs.0.018754-02009Actinobacteria/*classification/genetics/*isolation & purification/metabolism, Antarctic Regions, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/metabolismMetabolism
Phylogeny24158943Glaciihabitans tibetensis gen. nov., sp. nov., a psychrotolerant bacterium of the family Microbacteriaceae, isolated from glacier ice water.Li AH, Liu HC, Xin YH, Kim SG, Zhou YGInt J Syst Evol Microbiol10.1099/ijs.0.052670-02013Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ice Cover/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tibet, Ubiquinone/chemistry, *Water MicrobiologyGenetics
Genetics31266176Biosynthetic Potential of a Novel Antarctic Actinobacterium Marisediminicola antarctica ZS314(T) Revealed by Genomic Data Mining and Pigment Characterization.Liao L, Su S, Zhao B, Fan C, Zhang J, Li H, Chen BMar Drugs10.3390/md170703882019Actinobacteria/genetics/*metabolism, Antarctic Regions, Biological Products/*metabolism, Biosynthetic Pathways/*genetics, Data Mining, *Genome, Bacterial, Genomics/methods, Multigene Family, Phylogeny, Pigments, Biological/*biosynthesisMetabolism
Phylogeny33439118Marisediminicola senii sp. nov. isolated from Queen Maud Land, Antarctica.Jani K, Kajale S, Shetye M, Palkar S, Sharma AInt J Syst Evol Microbiol10.1099/ijsem.0.0046412021Actinobacteria/*classification/isolation & purification, Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, *Ice Cover, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16307Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22350)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22350
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29688Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2607328776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
76953Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID371117.1StrainInfo: A central database for resolving microbial strain identifiers