Strain identifier
BacDive ID: 7507
Type strain:
Species: Marisediminicola antarctica
Strain Designation: ZS314
Strain history: DSM 22350 <-- H.-R. Li ZS314 <-- H.-B. Teng and H.-R. Li.
NCBI tax ID(s): 674079 (species)
General
@ref: 16307
BacDive-ID: 7507
DSM-Number: 22350
keywords: genome sequence, 16S sequence, Bacteria, aerobe, psychrophilic, Gram-positive, motile, rod-shaped
description: Marisediminicola antarctica ZS314 is an aerobe, psychrophilic, Gram-positive bacterium that was isolated from marine sediment of intertidal zones.
NCBI tax id
- NCBI tax id: 674079
- Matching level: species
strain history
@ref | history |
---|---|
16307 | <- H. Li, Polar Res. Institute of China, Shanghai, PR China; ZS314 <- H. Teng and H. Li |
67770 | DSM 22350 <-- H.-R. Li ZS314 <-- H.-B. Teng and H.-R. Li. |
doi: 10.13145/bacdive7507.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Marisediminicola
- species: Marisediminicola antarctica
- full scientific name: Marisediminicola antarctica Li et al. 2010
@ref: 16307
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Marisediminicola
species: Marisediminicola antarctica
full scientific name: Marisediminicola antarctica Li et al. 2010
strain designation: ZS314
type strain: yes
Morphology
cell morphology
- @ref: 29688
- gram stain: positive
- cell length: 0.7-0.9 µm
- cell width: 0.2-0.3 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 29688
- production: yes
Culture and growth conditions
culture medium
- @ref: 16307
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16307 | positive | growth | 15-20 | psychrophilic |
29688 | positive | growth | 0-26 | |
29688 | positive | optimum | 18-23 | psychrophilic |
67770 | positive | growth | 20 | psychrophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
29688 | positive | growth | 05-10 | alkaliphile |
29688 | positive | optimum | 06-08 |
Physiology and metabolism
oxygen tolerance
- @ref: 29688
- oxygen tolerance: aerobe
spore formation
- @ref: 29688
- spore formation: no
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
29688 | NaCl | positive | growth | 0-6 % |
29688 | NaCl | positive | optimum | 02-04 % |
observation
@ref | observation |
---|---|
29688 | aggregates in chains |
67770 | quinones: MK-10 |
metabolite utilization
- @ref: 29688
- Chebi-ID: 4853
- metabolite: esculin
- utilization activity: +
- kind of utilization tested: hydrolysis
enzymes
- @ref: 29688
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | continent | latitude | longitude | country | origin.country |
---|---|---|---|---|---|---|---|
16307 | marine sediment of intertidal zones | Zhongshan Station (69° 22' 13'' S 76° 21' 41'' E) | Australia and Oceania | -69.3703 | 76.3614 | ||
67770 | Sandy intertidal sediment from the coastal area | Chinese Antarctic Zhongshan Station | Antarctica | Antarctica | ATA |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Environmental | #Aquatic | #Sediment |
#Environmental | #Terrestrial | #Tidal flat |
Safety information
risk assessment
- @ref: 16307
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16307
- description: Marisediminicola antarctica strain ZS314 16S ribosomal RNA gene, partial sequence
- accession: GQ496083
- length: 1480
- database: ena
- NCBI tax ID: 674079
Genome sequences
- @ref: 66792
- description: Marisediminicola antarctica ZS314
- accession: GCA_009930795
- assembly level: complete
- database: ncbi
- NCBI tax ID: 674079
GC content
@ref | GC-content | method |
---|---|---|
16307 | 67.3 | high performance liquid chromatography (HPLC) |
29688 | 67 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 73.329 | yes |
flagellated | no | 93.656 | no |
gram-positive | yes | 92.885 | yes |
anaerobic | no | 99.19 | no |
aerobic | yes | 94.762 | yes |
halophile | no | 85.041 | no |
spore-forming | no | 95.345 | yes |
glucose-util | yes | 89.999 | no |
thermophile | no | 98.124 | no |
glucose-ferment | no | 90.322 | no |
External links
@ref: 16307
culture collection no.: DSM 22350, CCTCC AB 209077, JCM 19552, NBRC 109630
straininfo link
- @ref: 76953
- straininfo: 371117
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 19965991 | Marisediminicola antarctica gen. nov., sp. nov., an actinobacterium isolated from the Antarctic. | Li HR, Yu Y, Luo W, Zeng YX | Int J Syst Evol Microbiol | 10.1099/ijs.0.018754-0 | 2009 | Actinobacteria/*classification/genetics/*isolation & purification/metabolism, Antarctic Regions, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/metabolism | Metabolism |
Phylogeny | 24158943 | Glaciihabitans tibetensis gen. nov., sp. nov., a psychrotolerant bacterium of the family Microbacteriaceae, isolated from glacier ice water. | Li AH, Liu HC, Xin YH, Kim SG, Zhou YG | Int J Syst Evol Microbiol | 10.1099/ijs.0.052670-0 | 2013 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ice Cover/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tibet, Ubiquinone/chemistry, *Water Microbiology | Genetics |
Genetics | 31266176 | Biosynthetic Potential of a Novel Antarctic Actinobacterium Marisediminicola antarctica ZS314(T) Revealed by Genomic Data Mining and Pigment Characterization. | Liao L, Su S, Zhao B, Fan C, Zhang J, Li H, Chen B | Mar Drugs | 10.3390/md17070388 | 2019 | Actinobacteria/genetics/*metabolism, Antarctic Regions, Biological Products/*metabolism, Biosynthetic Pathways/*genetics, Data Mining, *Genome, Bacterial, Genomics/methods, Multigene Family, Phylogeny, Pigments, Biological/*biosynthesis | Metabolism |
Phylogeny | 33439118 | Marisediminicola senii sp. nov. isolated from Queen Maud Land, Antarctica. | Jani K, Kajale S, Shetye M, Palkar S, Sharma A | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004641 | 2021 | Actinobacteria/*classification/isolation & purification, Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, *Ice Cover, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
16307 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22350) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22350 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
29688 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26073 | 28776041 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
76953 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID371117.1 | StrainInfo: A central database for resolving microbial strain identifiers |