Name: Frondihabitans cladoniiphilus CafT13
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7504

Type strain:

Species: Frondihabitans cladoniiphilus

Strain Designation: CafT13

Culture col. no.: DSM 23273, LMG 25550, JCM 18956

Strain history: LMG 25550 <-- M. Cardinale CafT13.

NCBI tax ID(s): 715785 (species)

SI-ID 368610

LMG 25550, DSM 23273, JCM 18956

Section

Frondihabitans cladoniiphilus CafT13 is a psychrophilic bacterium that was isolated from thallus of the lichen Cladonia arbuscula.

psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Frondihabitans*
	Species	**Frondihabitans cladoniiphilus**
	Full Scientific Name (LPSN)	Frondihabitans cladoniiphilus Cardinale et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69300]	Colony color	Golden yellow (1004)
[Ref.: #69300]	Cultivation medium used	ISP 4

[Ref.: #69300]	Colony color	Golden yellow (1004)
[Ref.: #69300]	Cultivation medium used	ISP 6

[Ref.: #69300]	Colony color	Maize yellow (1006), Honey yellow (1005)
[Ref.: #69300]	Cultivation medium used	ISP 2

[Ref.: #69300]	Colony color	Saffron yellow (1017)
[Ref.: #69300]	Cultivation medium used	suter with tyrosine

[Ref.: #69300]	Colony color	Saffron yellow (1017)
[Ref.: #69300]	Cultivation medium used	suter without tyrosine

[Ref.: #69300]	Colony color	Signal yellow (1003)
[Ref.: #69300]	Cultivation medium used	ISP 3

[Ref.: #69300]	Colony color	Signal yellow (1003)
[Ref.: #69300]	Cultivation medium used	ISP 5

[Ref.: #69300]	Pigment production	no
[Ref.: #69300]	Pigment name	Melanin
[Ref.: #69300]	Pigment production	no
[Ref.: #69300]	Pigment name	soluble pigment

[Ref.: #69300]	Multicellular complex forming ability	no
[Ref.: #69300]	Multicellular complex name	Aerial mycelium
[Ref.: #69300]	Medium Name (multicellularity)	ISP 2

[Ref.: #69300]	Multicellular complex forming ability	no
[Ref.: #69300]	Multicellular complex name	Aerial mycelium
[Ref.: #69300]	Medium Name (multicellularity)	ISP 3

[Ref.: #69300]	Multicellular complex forming ability	no
[Ref.: #69300]	Multicellular complex name	Aerial mycelium
[Ref.: #69300]	Medium Name (multicellularity)	ISP 4

[Ref.: #69300]	Multicellular complex forming ability	no
[Ref.: #69300]	Multicellular complex name	Aerial mycelium
[Ref.: #69300]	Medium Name (multicellularity)	ISP 5

[Ref.: #69300]	Multicellular complex forming ability	no
[Ref.: #69300]	Multicellular complex name	Aerial mycelium
[Ref.: #69300]	Medium Name (multicellularity)	ISP 6

[Ref.: #69300]	Multicellular complex forming ability	no
[Ref.: #69300]	Multicellular complex name	Aerial mycelium
[Ref.: #69300]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69300]	Multicellular complex forming ability	no
[Ref.: #69300]	Multicellular complex name	Aerial mycelium
[Ref.: #69300]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69300]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69300]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69300]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69300]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16772]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #16772]

Culture medium growth

[Ref.: #16772]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16772]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16772]			growth	20 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #16772]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69300]		NaCl		growth	0-7.5	%

[Ref.: #67770]

Observation

quinones: MK-8, MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69300]	arabinose ChEBI	-	growth
[Ref.: #69300]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69300]	fructose ChEBI	-	growth
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69300]	glucose ChEBI	-	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69300]	inositol ChEBI	-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69300]	mannose ChEBI	-	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69300]	raffinose ChEBI	-	growth
[Ref.: #69300]	rhamnose ChEBI	-	growth
[Ref.: #69300]	sucrose ChEBI	-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69300]	xylose ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69300]	3793	-	-	-	+	-	-	+	-	+	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69300]	5977	not determinedn.d.	+	+/-	+/-	-	+	+/-	+/-	-	+/-	+	+/-	+	-	-	+	+	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16772]	Sample type/isolated from	thallus of the lichen Cladonia arbuscula
[Ref.: #16772]	Host species	Cladonia arbuscula
[Ref.: #16772]	Geographic location (country and/or sea, region)	Koralpe, Handalm (46° 50' 35'' N 15° 01' 20'' E), about 1780 m above sea-level).
[Ref.: #16772]	Country	Austria
[Ref.: #16772]	Country ISO 3 Code	AUT
[Ref.: #16772]	Continent	Europe
[Ref.: #16772]	Geographic location	46.8431°/15.0222°

[Ref.: #67770]	Sample type/isolated from	Thallus of the reindeer lichen Cladonia arbuscula from the understory of a natural alpine spruce forest in the region of Styria
[Ref.: #67770]	Host species	Cladonia arbuscula
[Ref.: #67770]	Country	Austria
[Ref.: #67770]	Country ISO 3 Code	AUT
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host

#Other

#Lichen

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16772]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16772]	Frondihabitans cladoniiphilus partial 16S rRNA gene, type strain CafT13T	FN666417	1390	ENA	715785 tax ID

[Ref.: #16772]	GC-content	69.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	68.83-69.17 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #16772]

Culture collection no.

DSM 23273, LMG 25550, JCM 18956

[Ref.: #76950]

SI-ID 368610

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Galbitalea soli gen. nov., sp. nov., and Frondihabitans sucicola sp. nov.	Kim SJ, Lim JM, Ahn JH, Weon HY, Hamada M, Suzuki KI, Ahn TY, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.058339-0	2013	*
Phylogeny	Frondihabitans cladoniiphilus sp. nov., an actinobacterium of the family Microbacteriaceae isolated from lichen, and emended description of the genus Frondihabitans.	Cardinale M, Grube M, Berg G	Int J Syst Evol Microbiol	10.1099/ijs.0.028324-0	2011	*

References

#16772

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23273

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69300

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#76950

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID368610.1 )

* These data were automatically processed and therefore are not curated

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