Strain identifier

BacDive ID: 7504

Type strain: Yes

Species: Frondihabitans cladoniiphilus

Strain Designation: CafT13

Strain history: LMG 25550 <-- M. Cardinale CafT13.

NCBI tax ID(s): 715785 (species)

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General

@ref: 16772

BacDive-ID: 7504

DSM-Number: 23273

keywords: 16S sequence, Bacteria, psychrophilic

description: Frondihabitans cladoniiphilus CafT13 is a psychrophilic bacterium that was isolated from thallus of the lichen Cladonia arbuscula.

NCBI tax id

  • NCBI tax id: 715785
  • Matching level: species

strain history

@refhistory
16772<- M. Cardinale, Environmental Biotechnology, Graz Univ. Technology, Austria; CafT13
67770LMG 25550 <-- M. Cardinale CafT13.

doi: 10.13145/bacdive7504.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Frondihabitans
  • species: Frondihabitans cladoniiphilus
  • full scientific name: Frondihabitans cladoniiphilus Cardinale et al. 2011

@ref: 16772

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Frondihabitans

species: Frondihabitans cladoniiphilus

full scientific name: Frondihabitans cladoniiphilus Cardinale et al. 2011

strain designation: CafT13

type strain: yes

Morphology

colony morphology

@refcolony colormedium used
69300Golden yellow (1004)ISP 4
69300Golden yellow (1004)ISP 6
69300Maize yellow (1006), Honey yellow (1005)ISP 2
69300Saffron yellow (1017)suter with tyrosine
69300Saffron yellow (1017)suter without tyrosine
69300Signal yellow (1003)ISP 3
69300Signal yellow (1003)ISP 5

multicellular morphology

@refforms multicellular complexcomplex namemedium name
69300noAerial myceliumISP 2
69300noAerial myceliumISP 3
69300noAerial myceliumISP 4
69300noAerial myceliumISP 5
69300noAerial myceliumISP 6
69300noAerial myceliumsuter with tyrosine
69300noAerial myceliumsuter without tyrosine

pigmentation

@refproductionname
69300noMelanin
69300nosoluble pigment

multimedia

@refmultimedia contentcaptionintellectual property rights
69300DSM_23273_image3.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69300DSM_23273_image4.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

  • @ref: 16772
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16772positivegrowth20psychrophilic
67770positivegrowth25mesophilic

Physiology and metabolism

halophily

  • @ref: 69300
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-7.5 %

observation

  • @ref: 67770
  • observation: quinones: MK-8, MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6930022599arabinose-growth
6930062968cellulose-growth
6930028757fructose-growth
6930017234glucose-growth
6930017268inositol-growth
6930037684mannose-growth
6930016634raffinose-growth
6930026546rhamnose-growth
6930017992sucrose-growth
6930018222xylose-growth
6837917632nitrate-reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase+3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382acid phosphatase+3.1.3.2
68382trypsin-3.4.21.4
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382alkaline phosphatase+3.1.3.1
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69300---+--+-+----------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69300++/-+/--++/-+/--+/-++/-+--++-+-

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentlatitudelongitude
16772thallus of the lichen Cladonia arbusculaCladonia arbusculaKoralpe, Handalm (46° 50' 35'' N 15° 01' 20'' E), about 1780 m above sea-level).AustriaAUTEurope46.843115.0222
67770Thallus of the reindeer lichen Cladonia arbuscula from the understory of a natural alpine spruce forest in the region of StyriaCladonia arbusculaAustriaAUTEurope

isolation source categories

  • Cat1: #Host
  • Cat2: #Other
  • Cat3: #Lichen

Safety information

risk assessment

  • @ref: 16772
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16772
  • description: Frondihabitans cladoniiphilus partial 16S rRNA gene, type strain CafT13T
  • accession: FN666417
  • length: 1390
  • database: ena
  • NCBI tax ID: 715785

GC content

@refGC-contentmethod
1677269.0high performance liquid chromatography (HPLC)
6777068.83-69.17high performance liquid chromatography (HPLC)

External links

@ref: 16772

culture collection no.: DSM 23273, LMG 25550, JCM 18956

straininfo link

  • @ref: 76950
  • straininfo: 368610

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21296927Frondihabitans cladoniiphilus sp. nov., an actinobacterium of the family Microbacteriaceae isolated from lichen, and emended description of the genus Frondihabitans.Cardinale M, Grube M, Berg GInt J Syst Evol Microbiol10.1099/ijs.0.028324-02011Actinomycetales/*classification/genetics/*isolation & purification/metabolism, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Lichens/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/geneticsMetabolism
Phylogeny24132916Description of Galbitalea soli gen. nov., sp. nov., and Frondihabitans sucicola sp. nov.Kim SJ, Lim JM, Ahn JH, Weon HY, Hamada M, Suzuki KI, Ahn TY, Kwon SWInt J Syst Evol Microbiol10.1099/ijs.0.058339-02013Acer/*microbiology, Actinomycetales/*classification/genetics/isolation & purification, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil Microbiology, Vitamin K 2/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitle
16772Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23273)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23273
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69300Wink, J.https://cdn.dsmz.de/wink/DSM%2023273.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
76950Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID368610.1StrainInfo: A central database for resolving microbial strain identifiers