Name: Frondihabitans peucedani RS-15
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7503

Type strain:

Species: Frondihabitans peucedani

Strain Designation: RS-15

Culture col. no.: DSM 22180, KCTC 13435, JCM 17442, CIP 110287

Strain history: CIP <- 2011, KCTC <- S.D. Lee, Jeju National Univ., Jeju, Republic of Korea: strain RS-15

NCBI tax ID(s): 598626 (species)

SI-ID 370392

DSM 22180, KCTC 13435, JCM 17442, CIP 110287

Section

Frondihabitans peucedani RS-15 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from rhizosphere soil of Peucedanum japonicum Thunb..

Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Frondihabitans*
	Species	**Frondihabitans peucedani**
	Full Scientific Name (LPSN)	Frondihabitans peucedani Lee 2010

Information on morphological and physiological properties Morphology

[Ref.: #29652]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #121791]	Gram stain	positive

[Ref.: #29652]	Cell length	0.9-1 µm

[Ref.: #29652]	Cell width	0.3-0.5 µm

[Ref.: #29652]	Cell shape	rod-shaped
[Ref.: #121791]	Cell shape	rod-shaped

[Ref.: #29652]	Motility	no
[Ref.: #121791]	Motility	no

[Ref.: #29652]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16197]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #16197]

Culture medium growth

[Ref.: #16197]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16197]

Culture medium composition

expand / minimize

[Ref.: #37585]

Culture medium

MEDIUM 116 - for Streptomyces, Nocardia, Streptosporangium and Mycobacterium chlorophenolicum

[Ref.: #37585]

Culture medium growth

[Ref.: #37585]

Culture medium composition

expand / minimize

[Ref.: #121791]

Culture medium

CIP Medium 116

[Ref.: #121791]

Culture medium growth

[Ref.: #121791]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #16197]	growth	30 °C
[Ref.: #29652]	growth	04-37 °C
[Ref.: #29652]	optimum	20-30 °C
[Ref.: #37585]	growth	30 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #16197]	Temperature range	mesophilic
[Ref.: #37585]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29652]			optimum	8.1-11.1
[Ref.: #29652]			growth	5.1-12.1

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29652]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #29652]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29652]		NaCl		growth	4	%
[Ref.: #29652]		NaCl		optimum	4	%

[Ref.: #29652]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-8, MK-9, MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29652]	adipate ChEBI	+	carbon source
[Ref.: #29652]	arabinose ChEBI	+	carbon source
[Ref.: #29652]	decanoate ChEBI	+	carbon source
[Ref.: #29652]	glucose ChEBI	+	carbon source
[Ref.: #29652]	malate ChEBI	+	carbon source
[Ref.: #29652]	maltose ChEBI	+	carbon source
[Ref.: #29652]	mannitol ChEBI	+	carbon source
[Ref.: #29652]	mannose ChEBI	+	carbon source
[Ref.: #121791]	nitrate ChEBI	-	reduction
[Ref.: #121791]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #121791]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #29652]	catalase	+	1.11.1.6
[Ref.: #121791]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121791]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121791]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121791]	12491	-	+	+	+	+	+	+	+	-	-	+	+	+	+	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16197]	Sample type/isolated from	rhizosphere soil of Peucedanum japonicum Thunb.
[Ref.: #16197]	Host species	Peucedanum japonicum
[Ref.: #16197]	Geographic location (country and/or sea, region)	Jeju, Mara Island
[Ref.: #16197]	Country	Republic of Korea
[Ref.: #16197]	Country ISO 3 Code	KOR
[Ref.: #16197]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Rhizosphere soil of a plant (Peucedanum japonicum Thunb.) on Mara Island
[Ref.: #67770]	Host species	Peucedanum japonicum
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From rhizosphere
[Ref.: #67771]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #121791]	Sample type/isolated from	Environment, Rhizosphere soil of a plant, Peucedanum japonicum
[Ref.: #121791]	Geographic location (country and/or sea, region)	Mara Island, Jeju
[Ref.: #121791]	Country	Republic of Korea
[Ref.: #121791]	Country ISO 3 Code	KOR
[Ref.: #121791]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16197]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121791]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16197]	Frondihabitans peucedani partial 16S rRNA gene, type strain RS-15T	FM998017	1430	ENA	598626 tax ID

[Ref.: #16197]	GC-content	68.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29652]	GC-content	68.3 mol%

Availability in culture collections External links

[Ref.: #16197]

Culture collection no.

DSM 22180, KCTC 13435, JCM 17442, CIP 110287

[Ref.: #76949]

SI-ID 370392

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Galbitalea soli gen. nov., sp. nov., and Frondihabitans sucicola sp. nov.	Kim SJ, Lim JM, Ahn JH, Weon HY, Hamada M, Suzuki KI, Ahn TY, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.058339-0	2013	*
Phylogeny	Frondihabitans peucedani sp. nov., an actinobacterium isolated from rhizosphere soil, and emended description of the genus Frondihabitans Greene et al. 2009.	Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.017947-0	2009	*

References

#16197

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22180

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29652

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26041 (see below)

#37585 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#76949

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID370392.1 )

#121791 Collection of Institut Pasteur ; Curators of the CIP; CIP 110287

#26041

IJSEM 1740 2010 ( DOI 10.1099/ijs.0.017947-0 , PubMed 19734279 )

* These data were automatically processed and therefore are not curated

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