Name: Microbacterium lacus A5E-52
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7437

Type strain:

Species: Microbacterium lacus

Strain Designation: A5E-52

Culture col. no.: DSM 18910, JCM 15575, MBIC 08279, KCTC 19672, NBRC 103566

Strain history: DSM 18910 <-- H. Kasai <-- K. Adachi A5E-52.

NCBI tax ID(s): 415217 (species)

SI-ID 404307

DSM 18910

Special Collections

Other strains from Microbacterium lacus

Section

Microbacterium lacus A5E-52 is a bacterium that was isolated from sediment.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microbacterium*
	Species	**Microbacterium lacus**
	Full Scientific Name (LPSN)	Microbacterium lacus Kageyama et al. 2008

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7770]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7770]

Culture medium growth

[Ref.: #7770]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7770]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7770]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-12, MK-13

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7770]	Sample type/isolated from	sediment
[Ref.: #7770]	Geographic location (country and/or sea, region)	Shinji lake, Shimane pref.
[Ref.: #7770]	Country	Japan
[Ref.: #7770]	Country ISO 3 Code	JPN
[Ref.: #7770]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sediment at the mouth of the Hiratafuna River to Lake Shinjiko
[Ref.: #67770]	Geographic location (country and/or sea, region)	Shimane Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7770]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7770]	Microbacterium lacus gene for 16S rRNA, partial sequence	AB286030	1463	GenBank ENA	415217 tax ID

[Ref.: #7770]	GC-content	69 mol%
[Ref.: #67770]	GC-content	69 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #7770]

Culture collection no.

DSM 18910, JCM 15575, MBIC 08279, KCTC 19672, NBRC 103566

[Ref.: #76885]

SI-ID 404307

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium diaminobutyricum sp. nov., isolated from Halimione portulacoides, which contains diaminobutyric acid in its cell wall, and emended description of the genus Microbacterium.	Fidalgo C, Riesco R, Henriques I, Trujillo ME, Alves A	Int J Syst Evol Microbiol	10.1099/ijsem.0.001379	2016	*
Phylogeny	Microbacterium rhizomatis sp. nov., a beta-glucosidase-producing bacterium isolated from rhizome of Korean mountain ginseng.	Hoang VA, Kim YJ, Nguyen NL, Kang CH, Kang JP, Singh P, Farh ME, Yang DU, Yang DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.000399	2015	*
Phylogeny	Microbacterium invictum sp. nov., isolated from homemade compost.	Vaz-Moreira I, Lopes AR, Faria C, Sproer C, Schumann P, Nunes OC, Manaia CM	Int J Syst Evol Microbiol	10.1099/ijs.0.005561-0	2009	*

References

#7770

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18910

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#76885

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404307.1 )

* These data were automatically processed and therefore are not curated

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