Name: Microbacterium lacus SDZ
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23102

Type strain:

Species: Microbacterium lacus

Strain Designation: SDZ, SDZm4

Culture col. no.: DSM 26765

Strain history: <- W. Tappe, Forschungszentrum Jülich (IGB), Germany; SDZm4 <- W. Tappe and S. Kummer

NCBI tax ID(s): 415217 (species)

SI-ID 397793

DSM 26765

Special Collections

DSMZ

Other strains from Microbacterium lacus

Section

Microbacterium lacus SDZ is a bacterium that was isolated from typic Hapludalf soil.

Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microbacterium*
	Species	**Microbacterium lacus**
	Full Scientific Name (LPSN)	Microbacterium lacus Kageyama et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %90.45

[Ref.: #69480]	Motility	no Confidence in %92.875

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19076]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #19076]

Culture medium growth

[Ref.: #19076]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19076]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19076]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19076]	Sample type/isolated from	typic Hapludalf soil
[Ref.: #19076]	Country	Germany
[Ref.: #19076]	Country ISO 3 Code	DEU
[Ref.: #19076]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19076]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microbacterium lacus SDZm4	GCA_002812805	contig	GenBank ENA	415217 tax ID	*
[Ref.: #66792]	Microbacterium lacus strain SDZm4	415217.3	wgs	PATRIC	415217 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbacterium lacus strain SDZm4 PATRIC: 415217.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.45	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.916	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	74.695	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.146	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.429	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92.875	no

Availability in culture collections External links

[Ref.: #19076]

Culture collection no.

DSM 26765

[Ref.: #87339]

SI-ID 397793

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	A novel isolated Terrabacter-like bacterium can mineralize 2-aminopyrimidine, the principal metabolite of microbial sulfadiazine degradation.	Tappe W, Hofmann D, Disko U, Koeppchen S, Kummer S, Vereecken H	Biodegradation	10.1007/s10532-015-9722-9	2015	*
Metabolism	Degradation of sulfadiazine by Microbacterium lacus strain SDZm4, isolated from lysimeters previously manured with slurry from sulfadiazine-medicated pigs.	Tappe W, Herbst M, Hofmann D, Koeppchen S, Kummer S, Thiele B, Groeneweg J	Appl Environ Microbiol	10.1128/AEM.03636-12	2013	*

References

#19076

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26765

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87339

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397793.1 )

* These data were automatically processed and therefore are not curated

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Microbacterium lacus strain SDZm4

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