Name: Weissella confusa DSM 20194
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6843

Type strain:

Species: Weissella confusa

Culture col. no.: DSM 20194, NCDO 1975, CIP 102979

Strain history: CIP <- 1987, NCFB, lactobacillus confusus <- O. Kandler, Lactobacillus coprophilus subsp. confusus

NCBI tax ID(s): 1583 (species)

SI-ID 49588

CIP 102979, DSM 20194, NCDO 1975, NCIMB 701975, VTT E-90392

Special Collections

DSMZ
CIP

Other strains from Weissella confusa

Section

Weissella confusa DSM 20194 is a Gram-positive human pathogen that was isolated from soured carrot mash.

Gram-positive
human pathogen
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Weissella*
	Species	**Weissella confusa**
	Full Scientific Name (LPSN)	Weissella confusa corrig. (Holzapfel and Kandler 1969) Collins et al. 1994

	Synonym	"Lactobacillus* coprophilus subsp. confusus"*
	Synonym	Lactobacillus confusus
	Synonym	Lactobacillus confusa

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %96.399

[Ref.: #69480]	Motility	no Confidence in %93

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8468]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #8468]

Culture medium growth

[Ref.: #8468]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8468]

Culture medium composition

expand / minimize

[Ref.: #38750]

Culture medium

MEDIUM 41- for Lactobacillus, Leuconostoc, Weissella, Pediococcus, Sporolactobacillus inulinus

[Ref.: #38750]

Culture medium growth

[Ref.: #38750]

Culture medium composition

expand / minimize

[Ref.: #118725]

Culture medium

CIP Medium 41

[Ref.: #118725]

Culture medium growth

[Ref.: #118725]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #8468]			growth	30 °C
[Ref.: #38750]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #8468]	Murein short key	A11.04
[Ref.: #8468]	Murein types	A3alpha L-Lys-L-Ala

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8468]	Sample type/isolated from	soured carrot mash

[Ref.: #118725]	Sample type/isolated from	Food, Sour carrot mash
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Food
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8468]	Pathogenicity (human)	yes, in single cases
[Ref.: #8468]	Pathogenicity (animal)	yes, in single cases
[Ref.: #8468]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118725]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Weissella confusa DSM 20194	GCA_016466705	contig	GenBank ENA	1583 tax ID	*
[Ref.: #66792]	Weissella confusa strain DSM 20194	1583.305	wgs	PATRIC	1583 tax ID	*

[Ref.: #8468]

GC-content

45.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Weissella confusa strain DSM 20194 PATRIC: 1583.305
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Weissella confusa strain DSM 20194 PATRIC: 1583.305
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	96.399	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	85.606	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.352	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.482	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	88.74	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93	no

Availability in culture collections External links

[Ref.: #8468]

Culture collection no.

DSM 20194, NCDO 1975, CIP 102979

[Ref.: #76308]

SI-ID 49588

Literature:

	Title	Authors	Journal	DOI	Year
	Bioprocessing of Barley and Lentil Grains to Obtain In Situ Synthesis of Exopolysaccharides and Composite Wheat Bread with Improved Texture and Health Properties.	Perri G, Rizzello CG, Ampollini M, Celano G, Coda R, Gobbetti M, De Angelis M, Calasso M	Foods	10.3390/foods10071489	2021	*
	Use of Selected Lactic Acid Bacteria and Quinoa Flour for Manufacturing Novel Yogurt-Like Beverages.	Lorusso A, Coda R, Montemurro M, Rizzello CG	Foods	10.3390/foods7040051	2018	*

References

#8468

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20194

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#38750 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76308

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49588.1 )

#118725 Collection of Institut Pasteur ; Curators of the CIP; CIP 102979
* These data were automatically processed and therefore are not curated

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Weissella confusa strain DSM 20194

Weissella confusa strain DSM 20194

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