Weissella confusa (CIP 102578, 573-86)

Name: Weissella confusa (CIP 102578, 573-86)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 138045

Type strain

Strain Designation 573-86

Culture col. no. CIP 102578 573-86

NCBI tax ID(s) 1583

Special Collections CIP

History CIP <- 1986, Lab. Ident. Inst. Pasteur, Paris, France: strain 573-86 <- Clermont Ferrand Hosp., Clermont Ferrand, France, Lactobacillus confusus

Links

Weissella confusa 573-86 is a bacterium of the family Lactobacillaceae.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 70631

CIP 102578

@ref 20215

Last LPSN update 2026-05-29 08:39:10

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Weissella

Species Weissella confusa

Full scientific name Weissella confusa (Holzapfel and Kandler 1969) Collins et al. 1994

Synonyms (2)

"Lactobacillus coprophilus subsp. confusus"
Lactobacillus confusus

BacDive ID	Other strains from **Weissella confusa** (20)	Type strain
6844	W. confusa 548-D, DSM 20196, ATCC 10881, NCDO 1586, ... (type strain)
6843	W. confusa DSM 20194, NCDO 1975, CIP 102979
138177	W. confusa R-915-5, CIP 105139, ATCC 14434, JCM 1562, ...
143159	W. confusa CCUG 17582
146270	W. confusa CCUG 30763
146336	W. confusa CCUG 30943
146342	W. confusa CCUG 30969
148893	W. confusa CCUG 36556, LMG 17670
149544	W. confusa CCUG 37938
150163	W. confusa CCUG 39150
150289	W. confusa CCUG 39518
150448	W. confusa CCUG 39957
150685	W. confusa CCUG 41966, LMG 18815
150718	W. confusa CCUG 42040
151003	W. confusa CCUG 43002
153809	W. confusa CCUG 51220
154588	W. confusa CCUG 54486
155557	W. confusa CCUG 58143
156396	W. confusa CCUG 61560
172653	W. confusa CRBIP24.132

Morphology

Cell morphology

@ref	Confidence	Gram stain
125439	91.706
125439	98.11	positive
125438	93
125438	95.643	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
39000	MEDIUM 41- for Lactobacillus, Leuconostoc, Weissella, Pediococcus, Sporolactobacillus inulinus		Distilled water make up to (1000.000 ml);Man Rogosa Sharp broth (55.000 g)
39000	CIP Medium 41			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
39000	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	98.357

Spore formation

@ref	Spore formation	Confidence
125439		95.906

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
39000			Clermont-Ferrand	France	FRA	Europe
39000	Human, Foot pus	Homo sapiens	Clermont-Ferrand	France	FRA	Europe	1986

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
39000	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1646589v1 assembly for Weissella confusa CIP 102578	contig	GCA_016465895	1583.268	1583	68.89

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1646589v1 assembly for Weissella confusa CIP 102578
BV-BRC: 1583.268

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	98.36	no
125439	gram_stain	BacteriaNetⓘ	positive	98.11	no
125439	motility	BacteriaNetⓘ	no	91.71	no
125439	spore_formation	BacteriaNetⓘ	no	95.91	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Weissella confusa strain CIP 102578
PATRIC: 1583.268

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	95.64	no
125438	anaerobic	anaerobicⓘ	no	85.54	no
125438	spore-forming	spore-formingⓘ	no	89.30	no
125438	aerobic	aerobicⓘ	no	90.33	no
125438	thermophilic	thermophileⓘ	no	94.48	no
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#39000	Collection of Institut Pasteur ; Curators of the CIP; CIP 102578
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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