Name: Weissella confusa 573-86
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 138045

Type strain:

Species: Weissella confusa

Strain Designation: 573-86

Culture col. no.: CIP 102578

Strain history: CIP <- 1986, Lab. Ident. Inst. Pasteur, Paris, France: strain 573-86 <- Clermont Ferrand Hosp., Clermont Ferrand, France, Lactobacillus confusus

NCBI tax ID(s): 1583 (species)

SI-ID 70631

CIP 102578

Special Collections

Other strains from Weissella confusa

Section

When using BacDive for research please cite our paper

Weissella confusa 573-86 is a mesophilic bacterium of the family Lactobacillaceae.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Weissella*
	Species	**Weissella confusa**
	Full Scientific Name (LPSN)	Weissella confusa corrig. (Holzapfel and Kandler 1969) Collins et al. 1994

	Synonym	Lactobacillus confusus
	Synonym	Lactobacillus confusa
	Synonym	"Lactobacillus* coprophilus subsp. confusus"*

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	positive Confidence in %95.643
[Ref.: #125439]	Gram stain	positive Confidence in %99.4

[Ref.: #125438]	Motility	no Confidence in %93

Information on culture and growth conditions Culture and growth conditions

[Ref.: #39000]

Culture medium

MEDIUM 41- for Lactobacillus, Leuconostoc, Weissella, Pediococcus, Sporolactobacillus inulinus

[Ref.: #39000]

Culture medium growth

[Ref.: #39000]

Culture medium composition

expand / minimize

[Ref.: #39000]

Culture medium

CIP Medium 41

[Ref.: #39000]

Culture medium growth

[Ref.: #39000]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #39000]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

facultative anaerobe Confidence in %98.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #39000]	Sample type/isolated from	Human, Foot pus
[Ref.: #39000]	Geographic location (country and/or sea, region)	Clermont-Ferrand
[Ref.: #39000]	Country	France
[Ref.: #39000]	Country ISO 3 Code	FRA
[Ref.: #39000]	Continent	Europe
[Ref.: #39000]	Isolation date	1986

[Ref.: #39000]	Geographic location (country and/or sea, region)	Clermont-Ferrand
[Ref.: #39000]	Country	France
[Ref.: #39000]	Country ISO 3 Code	FRA
[Ref.: #39000]	Continent	Europe
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #39000]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Weissella confusa CIP 102578	GCA_016465895	contig	GenBank ENA	1583 tax ID	*
[Ref.: #66792]	Weissella confusa strain CIP 102578	1583.268	wgs	PATRIC	1583 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Weissella confusa strain CIP 102578 PATRIC: 1583.268
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	95.643	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	85.537	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	89.302	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	90.331	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	94.482	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	93	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Weissella confusa CIP 102578 NCBI: GCA_016465895
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	89.7
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	87.7
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	99.4
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	facultative anaerobe	98.2

Availability in culture collections External links

[Ref.: #39000]

Culture collection no.

CIP 102578

[Ref.: #94845]

SI-ID 70631

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#39000 Collection of Institut Pasteur ; Curators of the CIP; CIP 102578

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#94845

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID70631.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Weissella confusa strain CIP 102578

Weissella confusa CIP 102578

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