Weissella confusa (CCUG 41966, LMG 18815)

Name: Weissella confusa (CCUG 41966, LMG 18815)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 150685

Type strain

Culture col. no. CCUG 41966 LMG 18815

NCBI tax ID(s) 1583

Special Collections CCUG

Links

Weissella confusa CCUG 41966 is an aerobe bacterium that was isolated from Human feces,dialysis patient.

aerobe genome sequence Bacteria

Name and taxonomic classification

SI-ID 12495

LMG 18815,CCUG 41966

@ref 20215

Last LPSN update 2026-05-29 08:42:11

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Weissella

Species Weissella confusa

Full scientific name Weissella confusa (Holzapfel and Kandler 1969) Collins et al. 1994

Synonyms (2)

"Lactobacillus coprophilus subsp. confusus"
Lactobacillus confusus

BacDive ID	Other strains from **Weissella confusa** (20)	Type strain
6844	W. confusa 548-D, DSM 20196, ATCC 10881, NCDO 1586, ... (type strain)
6843	W. confusa DSM 20194, NCDO 1975, CIP 102979
138045	W. confusa 573-86, CIP 102578
138177	W. confusa R-915-5, CIP 105139, ATCC 14434, JCM 1562, ...
143159	W. confusa CCUG 17582
146270	W. confusa CCUG 30763
146336	W. confusa CCUG 30943
146342	W. confusa CCUG 30969
148893	W. confusa CCUG 36556, LMG 17670
149544	W. confusa CCUG 37938
150163	W. confusa CCUG 39150
150289	W. confusa CCUG 39518
150448	W. confusa CCUG 39957
150718	W. confusa CCUG 42040
151003	W. confusa CCUG 43002
153809	W. confusa CCUG 51220
154588	W. confusa CCUG 54486
155557	W. confusa CCUG 58143
156396	W. confusa CCUG 61560
172653	W. confusa CRBIP24.132

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	93
125438	96.384	positive
125439	96.028	positive

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
55281	positive	growth	30-37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
55281	aerobe
125439	facultative anaerobe	98.634

Spore formation

@ref	Spore formation	Confidence
125439		99.002

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Infection	#Patient	-

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
55281	Human feces,dialysis patient	Homo sapiens	Brügge	Belgium	BEL	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1646598v1 assembly for Weissella confusa CCUG 41966	contig	GCA_016465985	1583.273	1583	70.43

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1646598v1 assembly for Weissella confusa CCUG 41966
NCBI: GCA_016465985

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	98.63	no
125439	gram_stain	BacteriaNetⓘ	positive	96.03	no
125439	motility	BacteriaNetⓘ	no	89.16	no
125439	spore_formation	BacteriaNetⓘ	no	99.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Weissella confusa strain CCUG 41966
PATRIC: 1583.273

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	96.38	no
125438	anaerobic	anaerobicⓘ	no	85.71	yes
125438	spore-forming	spore-formingⓘ	no	89.35	no
125438	aerobic	aerobicⓘ	no	87.27	yes
125438	thermophilic	thermophileⓘ	no	94.36	no
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#55281	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 41966
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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