Lactobacillus parafarraginis NRIC 0677 | Type strain | DSM 18390, JCM 14109

Strain identifier

BacDive ID: 6644

Type strain:

Species: Lactobacillus parafarraginis

Strain Designation: NRIC 0677

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #7519]	Domain	Bacteria
[Ref.: #7519]	Phylum	Firmicutes
[Ref.: #7519]	Class	Bacilli
[Ref.: #7519]	Order	Lactobacillales
[Ref.: #7519]	Family	Lactobacillaceae
[Ref.: #7519]	Genus	Lactobacillus
[Ref.: #7519]	Species	Lactobacillus parafarraginis
[Ref.: #7519]	Full Scientific Name	Lactobacillus parafarraginis Endo and Okada 2007
[Ref.: #7519]	Strain Designation	NRIC 0677
[Ref.: #7519]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
	Last PNU update	25-03-2019 (DD-MM-YYYY)
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Firmicutes
[Ref.: #20215]	Class	Bacilli		Int. J. Syst. Evol. Microbiol. 60:469
[Ref.: #20215]	Family	Lactobacillaceae		Int. J. Syst. Bacteriol. 30:236
[Ref.: #20215]	Genus	Lactobacillus	genus (AL)	Int. J. Syst. Bacteriol. 30:225
[Ref.: #20215]	Species	Lactobacillus parafarraginis	sp. nov. (VP)	Int. J. Syst. Evol. Microbiol. 57:708*
[Ref.: #20215]	Full Scientific Name	Lactobacillus parafarraginis Endo and Okada 2007

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #31901]	Gram stain	positive
[Ref.: #31901]	Cell length	02-04 µm
[Ref.: #31901]	Cell width	0.8 µm
[Ref.: #31901]	Cell shape	rod-shaped

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31901]		NaCl		optimum	5	%

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #7519]	2391	-	-	-	-	+	+	+	-	-	-	+	+	+	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	+	+	-	-	+	+	-	-	-	-	-	-	-	-	-	+	-	+	-	+

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31901]	Arabinose	+	carbon source
[Ref.: #31901]	Galactose	+	carbon source
[Ref.: #31901]	Melibiose	+	carbon source
[Ref.: #31901]	Raffinose	+	carbon source
[Ref.: #31901]	Sucrose	+	carbon source
[Ref.: #31901]	Xylose	+	carbon source

[Ref.: #31901]

Observation

aggregates in chains

[Ref.: #7519]	Oxygen tolerance	microaerophile
[Ref.: #31901]	Oxygen tolerance	facultative anaerobe

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #7519]

Culture medium

MRS MEDIUM (DSMZ Medium 11), 30°C, microaerophilic

[Ref.: #7519]

Culture medium growth

[Ref.: #7519]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #36080]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #36080]

Culture medium growth

[Ref.: #36080]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7519]	growth	30 ̊C
[Ref.: #31901]	growth	20-37 ̊C
[Ref.: #31901]	optimum	28.5 ̊C
[Ref.: #36080]	growth	37 ̊C

[Ref.: #7519]	Temperature range	mesophilic
[Ref.: #31901]	Temperature range	mesophilic
[Ref.: #36080]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31901]			optimum	6.25
[Ref.: #31901]			growth	4-8.5

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #7519]

Sample type/isolated from

composting material of distilled shochun residue

[Ref.: #7519]

Geographic location (country and/or sea, region)

Miyazaki prefecture

[Ref.: #7519]

Country

Japan

[Ref.: #7519]

Continent

Asia

Isolation sources categories

#Engineered	#Biodegradation	#Composting
#Engineered	#Food production	#Fermented beverage

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #7519]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #7519]	GC-content	40 mol%
[Ref.: #31901]	GC-content	40 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Lactobacillus parafarraginis recA gene for recombinase A, partial cds	AB543919	414	390842	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Lactobacillus parafarraginis pheS gene for phenylalanyl-tRNA synthase alpha subunit, partial cds, strain: YIT 12274	AB602823	294	390842	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Lactobacillus parafarraginis rpoA gene for RNA polymerase alpha subunit, partial cds, strain: YIT 12274	AB602832	711	390842	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Lactobacillus parafarraginis strain JCM 14109 recombinase A (recA) gene, partial cds	JQ307416	414	390842	*
[Ref.: #7519]	INSDC (WGS)		AZFZ00000000
[Ref.: #7519]	DDBJ EMBL Direct submission		AB262734

Availability in culture collectionsStrain availability

[Ref.: #7519]

Culture collection no.

DSM 18390, JCM 14109

[Ref.: #7519]

Strain history

<- Akihito Endo, NRIC 0677

[Ref.: #20218]

Associated Passport(s) in StrainInfo

701759, 701760

References

#7519

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18390

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31901

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 ) - originally annotated from #28159 (see below)

#36080 ; Curators of the CIP;

#28159

IJSEM 708 2007 ( DOI 10.1099/ijs.0.64618-0 )

* These References are textmined

Change proposal

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