Name: Lentilactobacillus farraginis DSM 18382
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6643

Type strain:

Species: Lentilactobacillus farraginis

Culture col. no.: DSM 18382, JCM 14108, NRIC 0676, CIP 109567

Strain history: CIP <- 2007, JCM <- 2006, NRIC

NCBI tax ID(s): 390841 (species)

SI-ID 302641

DSM 18382, JCM 14108, LMG 24140, CIP 109567

Special Collections

Other strains from Lentilactobacillus farraginis

Section

Lentilactobacillus farraginis DSM 18382 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from composting material of distilled shochu residue.

Gram-positive
rod-shaped
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lentilactobacillus*
	Species	**Lentilactobacillus farraginis**
	Full Scientific Name (LPSN)	Lentilactobacillus farraginis (Endo and Okada 2007) Zheng et al. 2020

Synonym

Lactobacillus farraginis

Information on morphological and physiological properties Morphology

[Ref.: #31901]	Gram stain	positive
[Ref.: #119287]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %92.934

[Ref.: #31901]	Cell length	03-06 µm

[Ref.: #31901]	Cell width	0.8 µm

[Ref.: #31901]	Cell shape	rod-shaped
[Ref.: #119287]	Cell shape	rod-shaped

[Ref.: #31901]	Motility	no
[Ref.: #119287]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.5

[Ref.: #31901]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7364]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #7364]

Culture medium growth

[Ref.: #7364]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7364]

Culture medium composition

expand / minimize

[Ref.: #36536]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #36536]

Culture medium growth

[Ref.: #36536]

Culture medium composition

expand / minimize

[Ref.: #119287]

Culture medium

CIP Medium 40

[Ref.: #119287]

Culture medium growth

[Ref.: #119287]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #7364]		growth	30 °C
[Ref.: #31901]		growth	15-45 °C
[Ref.: #31901]		optimum	30 °C
[Ref.: #36536]		growth	37 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #119287]		growth	15-45 °C
[Ref.: #119287]	no	growth	10 °C

	pH	Kind of pH		pH
[Ref.: #31901]			optimum	6.5
[Ref.: #31901]			growth	04-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7364]	Oxygen tolerance	microaerophile
[Ref.: #31901]	Oxygen tolerance	facultative anaerobe
[Ref.: #119287]	Oxygen tolerance	facultative anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #31901]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31901]	arabinose ChEBI	+	carbon source
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31901]	galactose ChEBI	+	carbon source
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31901]	melibiose ChEBI	+	carbon source
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #119287]	nitrate ChEBI	+	reduction
[Ref.: #119287]	nitrate ChEBI	+	respiration
[Ref.: #119287]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31901]	raffinose ChEBI	+	carbon source
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31901]	sucrose ChEBI	+	carbon source
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #119287]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119287]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119287]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119287]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119287]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119287]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #7364]	15177	-	-	-	-	+	+	-	-	-	-	+	+	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119287]	11961	-	+	+	+	-	+	-	+	-	-	+	+	+	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7364]	Sample type/isolated from	composting material of distilled shochu residue
[Ref.: #7364]	Geographic location (country and/or sea, region)	Miyazaki prefecture
[Ref.: #7364]	Country	Japan
[Ref.: #7364]	Country ISO 3 Code	JPN
[Ref.: #7364]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Compost of distilled shochu residue

[Ref.: #119287]	Sample type/isolated from	Environment, Compost of distilled shochu residue
[Ref.: #119287]	Country	Japan
[Ref.: #119287]	Country ISO 3 Code	JPN
[Ref.: #119287]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Composting
#Engineered	#Food production	#Fermented
#Engineered	#Food production	#Beverage

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC383828 (>99% sequence identity) for Lentilactobacillus farraginis from Microbeatlas

Aquatic Samples	1092
Soil Samples	1305
Animal Samples	14859
Plant Samples	797
Total Samples	18053

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7364]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119287]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7364]	Lactobacillus farraginis gene for 16S rRNA, partial sequence, strain: NRIC 0676	AB262731	1514	GenBank ENA	390841 tax ID
[Ref.: #67770]	Lactobacillus farraginis JCM 14108 gene for 16S ribosomal RNA, partial sequence	LC383828	1512	GenBank ENA	390841 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lentilactobacillus farraginis DSM 18382 = JCM 14108	GCA_001435875	scaffold	GenBank ENA	1423743 tax ID
[Ref.: #67770]	Lentilactobacillus farraginis DSM 18382 = JCM 14108	GCA_000583655	contig	GenBank ENA	1423743 tax ID
[Ref.: #66792]	Lactobacillus farraginis DSM 18382 = JCM 14108	1423743.5	wgs	PATRIC	1423743 tax ID	*
[Ref.: #66792]	Lactobacillus farraginis JCM 14108	1236511.3	wgs	PATRIC	1423743 tax ID	*
[Ref.: #66792]	Lentilactobacillus farraginis JCM 14108	2576861775	draft	JGI IMG/M	1423743 tax ID	*
[Ref.: #66792]	Lentilactobacillus farraginis DSM 18382	2681813158	draft	JGI IMG/M	1423743 tax ID	*

[Ref.: #7364]	GC-content	40 mol%
[Ref.: #31901]	GC-content	41 mol%
[Ref.: #67770]	GC-content	41 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	42.1 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lentilactobacillus farraginis DSM 18382 = JCM 14108 DSM 18382 NCBI: GCA_001435875.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus farraginis DSM 18382 = JCM 14108 PATRIC: 1423743.5
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.934	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	84.289	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	78.795	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	90.118	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.5	yes

Availability in culture collections External links

[Ref.: #7364]

Culture collection no.

DSM 18382, JCM 14108, NRIC 0676, CIP 109567

[Ref.: #76117]

SI-ID 302641

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequences of Two Lactobacillus Strains, L. farraginis JCM 14108T and L. composti JCM 14202T, Isolated from Compost of Distilled Shochu Residue.	Yuki M, Oshima K, Suda W, Kitahara M, Kitamura K, Iida T, Hattori M, Ohkuma M	Genome Announc	10.1128/genomeA.00257-14	2014	*
Phylogeny	Lactobacillus farraginis sp. nov. and Lactobacillus parafarraginis sp. nov., heterofermentative lactobacilli isolated from a compost of distilled shochu residue.	Endo A, Okada S	Int J Syst Evol Microbiol	10.1099/ijs.0.64618-0	2007	*

References

#7364

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18382

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31901

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28159 (see below)

#36536 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76117

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID302641.1 )

#119287 Collection of Institut Pasteur ; Curators of the CIP; CIP 109567

#28159

IJSEM 708 2007 ( DOI 10.1099/ijs.0.64618-0 , PubMed 17392191 )

* These data were automatically processed and therefore are not curated

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Lentilactobacillus farraginis DSM 18382 = JCM 14108 DSM 18382

Lactobacillus farraginis DSM 18382 = JCM 14108

Change proposal

Change proposal