Limosilactobacillus coleohominis (LMG 21591, JCM 11550, DSM 14060)

Name: Limosilactobacillus coleohominis (LMG 21591, JCM 11550, DSM 14060)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6587

Type strain

Culture col. no. LMG 21591 JCM 11550 DSM 14060 CCUG 44007 CIP 106820 1 more

NCBI tax ID(s) 887896 181675

Special Collections DSMZ CCUG JCM KCTC CIP

Links

Limosilactobacillus coleohominis LMG 21591 is a facultative anaerobe, mesophilic, Gram-positive prokaryote that was isolated from human vagina.

Gram-positive rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 49547

DSM 14060,CCUG 44007,CIP 106820,LMG21591,JCM 11550

@ref 20215

Last LPSN update 2025-12-16 09:48:22

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Limosilactobacillus

Species Limosilactobacillus coleohominis

Full scientific name Limosilactobacillus coleohominis (Nikolaitchouk et al. 2001) Zheng et al. 2020

Synonyms (1)

Lactobacillus coleohominis

BacDive ID	Other strains from **Limosilactobacillus coleohominis** (2)	Type strain
165604	L. coleohominis JCM 7763
165605	L. coleohominis JCM 7764

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
118336	positive	rod-shaped
125438			93.5
125438	positive		94.158

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5229	MRS MEDIUM (DSMZ Medium 11)	Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
39590	MEDIUM 40- for Lactobacillus and Leuconostoc		Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
118336	CIP Medium 40	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5229	positive	growth	37	mesophilic
39590	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic
118336	positive	growth	37	mesophilic
118336	negative	growth	10
118336	negative	growth	15
118336	negative	growth	22
118336	negative	growth	30
118336	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
118336	facultative anaerobe
125439	obligate aerobe	99.1

Murein

@ref	Murein short key	Type
5229	A31	A1gamma m-Dpm-direct

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
118336	17632 ChEBI	nitrate	-	reduction
118336	17632 ChEBI	nitrate	-	respiration
118336	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
118336	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
118336	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
118336	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	+	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
67770	beta-glucuronidase		3.2.1.31
68382	beta-glucuronidase	+	3.2.1.31	from API zym
118336	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
118336	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
118336	ornithine decarboxylase	-	4.1.1.17
118336	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118336	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	+

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
118336	not determinedn.d.	-	-	-	-	+	-	-	-	-	-	+	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Urogenital tract	#Vagina
#Host	#Human	#Female

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
5229	human vagina			Sweden	SWE	Europe
56076	Human vagina,fornix,healthy 31-yr-old subject	1999-04-19	Göteborg	Sweden	SWE	Europe
67770	Vagina of healthy woman
118336	Human, Vagina		Göteborg	Sweden	SWE	Europe

Taxonmaps

69479

Global distribution of 16S sequence LC311742 (>99% sequence identity) for Limosilactobacillus coleohominis subclade from Microbeatlas

Aquatic Samples	105
Soil Samples	222
Animal Samples	9676
Plant Samples	130
Total Samples	10133

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5229	1	Risk group (German classification) According to TRBA 466
118336	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
67770	ASM143505v1 assembly for Limosilactobacillus coleohominis DSM 14060	scaffold	GCA_001435055	887896.3	2700989143	887896

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Lactobacillus coleohominis partial 16S rRNA gene, strain type strain:DSM 14060	AM113776	1564	887896
5229	Lactobacillus colehominis 16S rRNA gene	AJ292530	1392	181675
67770	Lactobacillus coleohominis gene for 16S ribosomal RNA, partial sequence, strain: JCM 11550	LC311742	1513	887896
124043	Lactobacillus coleohominis gene for 16S rRNA, partial sequence, strain: JCM 11550.	AB289060	686	887896

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Limosilactobacillus coleohominis DSM 14060
NCBI: GCA_001435055

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	55.40	no
125439	motility	BacteriaNetⓘ	no	61.80	no
125439	gram_stain	BacteriaNetⓘ	variable	68.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus coleohominis DSM 14060
PATRIC: 887896.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	94.16	no
125438	anaerobic	anaerobicⓘ	no	85.32	no
125438	aerobic	aerobicⓘ	no	92.48	no
125438	spore-forming	spore-formingⓘ	no	88.80	no
125438	thermophilic	thermophileⓘ	no	96.50	yes
125438	flagellated	motile2+ⓘ	no	93.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence of Paramuribaculum intestinale DSM 100749^T, isolated from feces of C57BL/6 laboratory mice.	Low A, Koh XQ, Ding Y, Seedorf H.	Microbiol Resour Announc	10.1128/mra.00797-23	2023
	Genome Sequence Announcement of Lactobacillus vaginalis LMG S-26419, Isolated from a Healthy Woman.	Puglisi E, Galletti S, Sagheddu V, Elli M.	Microbiol Resour Announc	10.1128/mra.01534-18	2019
	Complete Genome Sequence of Phascolarctobacterium faecium JCM 30894, a Succinate-Utilizing Bacterium Isolated from Human Feces.	Ogata Y, Suda W, Ikeyama N, Hattori M, Ohkuma M, Sakamoto M.	Microbiol Resour Announc	10.1128/mra.01487-18	2019
	Gut commensals-derived succinate impels colonic inflammation in ulcerative colitis.	Dalal R, Sadhu S, Batra A, Goswami S, Dandotiya J, K V V, Yadav R, Singh V, Chaturvedi K, Kannan R, Kumar S, Kumar Y, Rathore DK, Salunke DB, Ahuja V, Awasthi A.	NPJ Biofilms Microbiomes	10.1038/s41522-025-00672-3	2025
	Pathogenic potential of bacteria isolated from commercial biostimulants.	Bulgari D, Filisetti S, Montagna M, Gobbi E, Faoro F.	Arch Microbiol	10.1007/s00203-022-02769-1	2022
	Campylobacter jejuni and casein hydrolysate addition: Impact on poultry in vitro cecal microbiota and metabolome.	Olson EG, Dittoe DK, Chatman CC, Majumder EL, Ricke SC.	PLoS One	10.1371/journal.pone.0303856	2024
Metabolism	Metabolism of Daidzein and Genistein by Gut Bacteria of the Class Coriobacteriia.	Soukup ST, Stoll DA, Danylec N, Schoepf A, Kulling SE, Huch M.	Foods	10.3390/foods10112741	2021
Metabolism	Microbial interaction between the succinate-utilizing bacterium Phascolarctobacterium faecium and the gut commensal Bacteroides thetaiotaomicron.	Ikeyama N, Murakami T, Toyoda A, Mori H, Iino T, Ohkuma M, Sakamoto M.	Microbiologyopen	10.1002/mbo3.1111	2020
Enzymology	Phospholipid N-Methyltransferases Produce Various Methylated Phosphatidylethanolamine Derivatives in Thermophilic Bacteria.	Kleetz J, Welter L, Mizza AS, Aktas M, Narberhaus F.	Appl Environ Microbiol	10.1128/aem.01105-21	2021
Pathogenicity	In vitro interactions of Alternaria mycotoxins, an emerging class of food contaminants, with the gut microbiota: a bidirectional relationship.	Crudo F, Aichinger G, Mihajlovic J, Varga E, Dellafiora L, Warth B, Dall'Asta C, Berry D, Marko D.	Arch Toxicol	10.1007/s00204-021-03043-x	2021
Pathogenicity	Imidacloprid Decreases Honey Bee Survival Rates but Does Not Affect the Gut Microbiome.	Raymann K, Motta EVS, Girard C, Riddington IM, Dinser JA, Moran NA.	Appl Environ Microbiol	10.1128/aem.00545-18	2018
Phylogeny	Lactobacillus alvi sp. nov., isolated from the intestinal tract of chicken.	Kim HJ, Eom SJ, Park SJ, Cha CJ, Kim GB	FEMS Microbiol Lett	10.1111/j.1574-6968.2011.02361.x	2011
Phylogeny	Lactobacillus coleohominis sp. nov., isolated from human sources.	Nikolaitchouk N, Wacher C, Falsen E, Andersch B, Collins MD, Lawson PA	Int J Syst Evol Microbiol	10.1099/00207713-51-6-2081	2001

References

#5229	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14060
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#39590	; Curators of the CIP;
#56076	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 44007
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118336	Collection of Institut Pasteur ; Curators of the CIP; CIP 106820
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Limosilactobacillus coleohominis (LMG 21591, JCM 11550, DSM 14060)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Murein

Metabolite utilization

Antibiotic resistance

Metabolite tests

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001435055

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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