Name: Limosilactobacillus coleohominis LMG 21591
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6587

Type strain:

Species: Limosilactobacillus coleohominis

Culture col. no.: LMG 21591, JCM 11550, DSM 14060, CCUG 44007, CIP 106820, KCTC 21007

Strain history: CIP <- 2000, CCUG <- Andersch B, Göteborg, Sweden

NCBI tax ID(s): 887896 (strain), 181675 (species)

SI-ID 49547

DSM 14060, CCUG 44007, CIP 106820, LMG21591, JCM 11550

Special Collections

Other strains from Limosilactobacillus coleohominis

Section

Limosilactobacillus coleohominis LMG 21591 is a facultative anaerobe, Gram-positive bacterium that was isolated from human vagina.

Gram-positive
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Limosilactobacillus*
	Species	**Limosilactobacillus coleohominis**
	Full Scientific Name (LPSN)	Limosilactobacillus coleohominis (Nikolaitchouk et al. 2001) Zheng et al. 2020

Synonym

Lactobacillus coleohominis

Information on morphological and physiological properties Morphology

[Ref.: #118336]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %94.158

[Ref.: #118336]	Cell shape	rod-shaped

[Ref.: #118336]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5229]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #5229]

Culture medium growth

[Ref.: #5229]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5229]

Culture medium composition

expand / minimize

[Ref.: #39590]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #39590]

Culture medium growth

[Ref.: #39590]

Culture medium composition

expand / minimize

[Ref.: #118336]

Culture medium

CIP Medium 40

[Ref.: #118336]

Culture medium growth

[Ref.: #118336]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5229]		growth	37 °C
[Ref.: #39590]		growth	37 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #118336]		growth	37 °C
[Ref.: #118336]	no	growth	10 °C
[Ref.: #118336]	no	growth	15 °C
[Ref.: #118336]	no	growth	22 °C
[Ref.: #118336]	no	growth	30 °C
[Ref.: #118336]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #118336]

Oxygen tolerance

facultative anaerobe

[Ref.: #5229]	Murein short key	A31
[Ref.: #5229]	Murein types	A1gamma m-Dpm-direct

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #118336]	nitrate ChEBI	-	reduction
[Ref.: #118336]	nitrate ChEBI	-	respiration
[Ref.: #118336]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #118336]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #118336]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #118336]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #67770]	beta-glucuronidase		3.2.1.31
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #118336]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #118336]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #118336]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #118336]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #118336]	10732	not determinedn.d.	-	-	-	-	+	-	-	-	-	-	+	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #118336]	9838	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5229]	Sample type/isolated from	human vagina
[Ref.: #5229]	Country	Sweden
[Ref.: #5229]	Country ISO 3 Code	SWE
[Ref.: #5229]	Continent	Europe

[Ref.: #56076]	Sample type/isolated from	Human vagina,fornix,healthy 31-yr-old subject
[Ref.: #56076]	Sampling date	1999-04-19
[Ref.: #56076]	Geographic location (country and/or sea, region)	Göteborg
[Ref.: #56076]	Country	Sweden
[Ref.: #56076]	Country ISO 3 Code	SWE
[Ref.: #56076]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Vagina of healthy woman

[Ref.: #118336]	Sample type/isolated from	Human, Vagina
[Ref.: #118336]	Geographic location (country and/or sea, region)	Göteborg
[Ref.: #118336]	Country	Sweden
[Ref.: #118336]	Country ISO 3 Code	SWE
[Ref.: #118336]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Urogenital tract	#Vagina
#Host	#Human	#Female

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC311742 (>99% sequence identity) for Limosilactobacillus coleohominis subclade from Microbeatlas

Aquatic Samples	105
Soil Samples	222
Animal Samples	9676
Plant Samples	130
Total Samples	10133

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5229]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118336]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus coleohominis gene for 16S ribosomal RNA, partial sequence, strain: JCM 11550	LC311742	1513	GenBank ENA	887896 tax ID
[Ref.: #5229]	Lactobacillus colehominis 16S rRNA gene	AJ292530	1392	GenBank ENA	181675 tax ID
[Ref.: #124043]	Lactobacillus coleohominis gene for 16S rRNA, partial sequence, strain: JCM 11550.	AB289060	686	GenBank ENA	887896 tax ID	*
[Ref.: #20218]	Lactobacillus coleohominis partial 16S rRNA gene, strain type strain:DSM 14060	AM113776	1564	GenBank ENA	887896 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Limosilactobacillus coleohominis DSM 14060	GCA_001435055	scaffold	GenBank ENA	887896 tax ID
[Ref.: #66792]	Lactobacillus coleohominis DSM 14060	887896.3	wgs	PATRIC	887896 tax ID	*
[Ref.: #66792]	Limosilactobacillus coleohominis DSM 14060	2700989143	draft	JGI IMG/M	887896 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus coleohominis DSM 14060 PATRIC: 887896.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	94.158	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	85.318	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	92.483	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.799	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93.5	no

Availability in culture collections External links

[Ref.: #5229]

Culture collection no.

LMG 21591, JCM 11550, DSM 14060, CCUG 44007, CIP 106820, KCTC 21007

[Ref.: #76061]

SI-ID 49547

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus alvi sp. nov., isolated from the intestinal tract of chicken.	Kim HJ, Eom SJ, Park SJ, Cha CJ, Kim GB	FEMS Microbiol Lett	10.1111/j.1574-6968.2011.02361.x	2011	*
Phylogeny	Lactobacillus coleohominis sp. nov., isolated from human sources.	Nikolaitchouk N, Wacher C, Falsen E, Andersch B, Collins MD, Lawson PA	Int J Syst Evol Microbiol	10.1099/00207713-51-6-2081	2001	*

References

#5229

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14060

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39590 ; Curators of the CIP;
#56076 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 44007

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76061

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49547.1 )

#118336 Collection of Institut Pasteur ; Curators of the CIP; CIP 106820

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Lactobacillus coleohominis DSM 14060

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