Name: Latilactobacillus fuchuensis B5M10
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6588

Type strain:

Species: Latilactobacillus fuchuensis

Strain Designation: B5M10

Culture col. no.: DSM 14340, JCM 11249, CCUG 47133, CCM 7144, CIP 107633, KCTC 3797, LMG 21669, NCIMB 14046, CIP 07633

Strain history: CIP <- 2002, JCM <- 2001, Y. Kato <- H. Hayashidani: strain B5M10

NCBI tax ID(s): 164393 (species)

SI-ID 265464

JCM 11249, DSM 14340, CCUG 47133, CIP 107633, KCTC 3797, CIP 07633, LMG 21669, CCM 7144, NCIMB 14046

Special Collections

Other strains from Latilactobacillus fuchuensis

Section

When using BacDive for research please cite our paper

Latilactobacillus fuchuensis B5M10 is an anaerobe, psychrophilic, rod-shaped bacterium that was isolated from vacuum-packaged beef.

rod-shaped
anaerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Latilactobacillus*
	Species	**Latilactobacillus fuchuensis**
	Full Scientific Name (LPSN)	Latilactobacillus fuchuensis (Sakala et al. 2002) Zheng et al. 2020

Synonym

Lactobacillus fuchuensis

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #119476]	Gram stain	positive
[Ref.: #125438]	Gram stain	positive Confidence in %90.617

[Ref.: #119476]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	curved-shaped

[Ref.: #119476]	Motility	no
[Ref.: #67771]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5311]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #5311]

Culture medium growth

[Ref.: #5311]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5311]

Culture medium composition

expand / minimize

[Ref.: #39718]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #39718]

Culture medium growth

[Ref.: #39718]

Culture medium composition

expand / minimize

[Ref.: #119476]

Culture medium

CIP Medium 40

[Ref.: #119476]

Culture medium growth

[Ref.: #119476]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5311]		growth	20 °C
[Ref.: #39718]		growth	20 °C
[Ref.: #57526]		growth	30 °C
[Ref.: #67770]		growth	20 °C
[Ref.: #67771]		growth	20 °C
[Ref.: #119476]		growth	15-30 °C
[Ref.: #119476]	negative	growth	10 °C
[Ref.: #119476]	negative	growth	37 °C
[Ref.: #119476]	negative	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #57526]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	facultative anaerobe
[Ref.: #119476]	Oxygen tolerance	facultative anaerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %96.6

[Ref.: #67771]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #119476]	nitrate ChEBI	-	reduction
[Ref.: #119476]	nitrate ChEBI	+	respiration
[Ref.: #119476]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119476]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #119476]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119476]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119476]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119476]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119476]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119476]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #5311]	15113	-	-	-	-	-	+	+	-	-	-	+	+	+	+	-	+	-	-	-	-	-	-	+	+	+	+	+	+	+	+	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119476]	10524	-	+	-	-	-	+	+	-	-	-	+	+	-	-	-	-	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5311]	Sample type/isolated from	vacuum-packaged beef
[Ref.: #5311]	Country	Japan
[Ref.: #5311]	Country ISO 3 Code	JPN
[Ref.: #5311]	Continent	Asia

[Ref.: #57526]	Sample type/isolated from	Vacuum-packaged refrigerated beef

[Ref.: #67770]	Sample type/isolated from	Vacuum-packaged refrigerated beef

[Ref.: #67771]	Sample type/isolated from	From vacuum-packaged refrigerated beef
[Ref.: #67771]	Country	Japan
[Ref.: #67771]	Country ISO 3 Code	JPN
[Ref.: #67771]	Continent	Asia

[Ref.: #119476]	Sample type/isolated from	Food, Beef, vacuum package
[Ref.: #119476]	Country	Japan
[Ref.: #119476]	Country ISO 3 Code	JPN
[Ref.: #119476]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Bottled, canned, packed food
#Engineered	#Food production	#Meat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX986973 (>99% sequence identity) for Latilactobacillus fuchuensis subclade from Microbeatlas

Aquatic Samples	968
Soil Samples	436
Animal Samples	4850
Plant Samples	554
Total Samples	6808

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5311]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119476]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5311]	Lactobacillus fuchuensis gene for 16S rRNA	AB063479	1329	GenBank ENA	164393 tax ID
[Ref.: #67770]	Lactobacillus fuchuensis strain LMG 21669 16S ribosomal RNA gene, partial sequence	JX986973	1524	GenBank ENA	164393 tax ID
[Ref.: #67771]	Lactobacillus fuchuensis JCM 11249 gene for 16S ribosomal RNA, partial sequence	LC480799	1508	GenBank ENA	164393 tax ID
[Ref.: #20218]	Lactobacillus fuchuensis gene for 16S ribosomal RNA, partial sequence, strain: B5M10 (=JCM 11249, =DSM 14340)	AB370875	1495	GenBank ENA	164393 tax ID	*
[Ref.: #20218]	Lactobacillus fuchuensis gene for 16S rRNA, partial sequence, strain: JCM 11249	AB289120	641	GenBank ENA	164393 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Latilactobacillus fuchuensis DSM 14340 = JCM 11249	GCA_001435065	scaffold	GenBank ENA	1423747 tax ID
[Ref.: #67771]	Latilactobacillus fuchuensis DSM 14340 = JCM 11249	GCA_000615805	contig	GenBank ENA	1423747 tax ID
[Ref.: #66792]	Lactobacillus fuchuensis DSM 14340 = JCM 11249	1423747.3	wgs	PATRIC	1423747 tax ID	*
[Ref.: #66792]	Lactobacillus fuchuensis JCM 11249	1236949.3	wgs	PATRIC	1423747 tax ID	*
[Ref.: #66792]	Lactobacillus fuchuensis DSM 14340	2700989144	draft	JGI IMG/M	1423747 tax ID	*
[Ref.: #66792]	Lactobacillus fuchuensis JCM 11249	2585427876	draft	JGI IMG/M	1423747 tax ID	*

[Ref.: #5311]	GC-content	41.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	41.8 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus fuchuensis DSM 14340 = JCM 11249 PATRIC: 1423747.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	90.617	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	91.134	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	84.666	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	94.373	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	96.5	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	88.5	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Latilactobacillus fuchuensis DSM 14340 = JCM 11249 NCBI: GCA_001435065
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	96.6
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	variable	72.4
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	61.5
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	72.8

Availability in culture collections External links

[Ref.: #5311]

Culture collection no.

DSM 14340, JCM 11249, CCUG 47133, CCM 7144, CIP 107633, KCTC 3797, LMG 21669, NCIMB 14046, CIP 07633

[Ref.: #76062]

SI-ID 265464

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus fuchuensis sp. nov., isolated from vacuum-packaged refrigerated beef.	Sakala RM, Kato Y, Hayashidani H, Murakami M, Kaneuchi C, Ogawa M	Int J Syst Evol Microbiol	10.1099/00207713-52-4-1151	2002	*

References

#5311

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14340

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39718 ; Curators of the CIP;
#57526 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47133

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#76062

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265464.1 )

#119476 Collection of Institut Pasteur ; Curators of the CIP; CIP 107633

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

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Lactobacillus fuchuensis DSM 14340 = JCM 11249

Latilactobacillus fuchuensis DSM 14340 = JCM 11249

Change proposal

Change proposal