Name: Liquorilactobacillus nagelii LuE10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6586

Type strain:

Species: Liquorilactobacillus nagelii

Strain Designation: LuE10, LuE₁₀

Culture col. no.: DSM 13675, ATCC 700692, CCUG 43575, JCM 12492, KCTC 21009

Strain history: CCUG 43575 <-- ATCC 700692 <-- C. G. Edwards LuE₁₀.

NCBI tax ID(s): 1122150 (strain), 82688 (species)

Other strains from Liquorilactobacillus nagelii

L. nagelii TPM-B2, DSM 13138

Section

Liquorilactobacillus nagelii LuE10 is an anaerobe, mesophilic bacterium that was isolated from partially fermented wine.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Liquorilactobacillus*
	Species	**Liquorilactobacillus nagelii**
	Full Scientific Name (PNU)	Liquorilactobacillus nagelii (Edwards et al. 2000) Zheng et al. 2020

Synonym

Lactobacillus nagelii

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4951]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #4951]

Culture medium growth

[Ref.: #4951]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #4951]

Culture medium composition

expand / minimize

[Ref.: #39913]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #39913]

Culture medium growth

[Ref.: #39913]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #4951]	growth	30 °C
[Ref.: #39913]	growth	30 °C
[Ref.: #55947]	growth	30-37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #4951]	Temperature range	mesophilic
[Ref.: #39913]	Temperature range	mesophilic
[Ref.: #55947]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #55947]

Oxygen tolerance

anaerobe

[Ref.: #4951]	Murein short key	A31
[Ref.: #4951]	Murein types	A1gamma m-Dpm-direct

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #4951]	7961	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+	+/-	-	-	+/-	-	-	-	+	-	-	+	+/-	+	+	-	-	+	+	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4951]	Sample type/isolated from	partially fermented wine
[Ref.: #4951]	Country	USA
[Ref.: #4951]	Country ISO 3 Code	USA
[Ref.: #4951]	Continent	North America

[Ref.: #55947]	Sample type/isolated from	Commercial red wine
[Ref.: #55947]	Geographic location (country and/or sea, region)	CA,Napa
[Ref.: #55947]	Country	USA
[Ref.: #55947]	Country ISO 3 Code	USA
[Ref.: #55947]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Wines undergoing sluggish/stuck alcoholic fermentation
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Fermented
#Engineered	#Food production	#Beverage

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC383821 (>99% sequence identity) for Liquorilactobacillus nagelii from Microbeatlas

Aquatic Samples	972
Soil Samples	182
Animal Samples	3814
Plant Samples	256
Total Samples	5224

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4951]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus nagelii JCM 12492 gene for 16S ribosomal RNA, partial sequence	LC383821	1499	ENA	82688 tax ID
[Ref.: #4951]	Lactobacillus sp. LuE10 16S rRNA gene	Y17500	1100	ENA	82688 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Liquorilactobacillus nagelii DSM 13675 DSM 13675	GCA_001434225	scaffold	GenBank	1122150 tax ID
[Ref.: #66792]	Liquorilactobacillus nagelii DSM 13675 DSM 13675	GCA_019444005	chromosome	GenBank	1122150 tax ID	*
[Ref.: #66792]	Lactobacillus nagelii DSM 13675	1122150.3	wgs	PATRIC	1122150 tax ID	*
[Ref.: #66792]	Liquorilactobacillus nagelii DSM 13675	1122150.23	complete	PATRIC	1122150 tax ID	*
[Ref.: #66792]	Liquorilactobacillus nagelii DSM 13675	2574179724	draft	JGI IMG/M	1122150 tax ID	*
[Ref.: #66792]	Liquorilactobacillus nagelii DSM 13675	2660238052	draft	JGI IMG/M	1122150 tax ID	*

[Ref.: #67770]

GC-content

36.7 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #4951]

Culture collection no.

DSM 13675, ATCC 700692, CCUG 43575, JCM 12492, KCTC 21009

[Ref.: #20218]

Associated Passport(s) in StrainInfo

118350, 118348

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus ceti sp. nov., isolated from beaked whales (Ziphius cavirostris).	Vela AI, Fernandez A, Espinosa de los Monteros A, Goyache J, Herraez P, Tames B, Cruz F, Dominguez L, Fernandez-Garayzabal JF	Int J Syst Evol Microbiol	10.1099/ijs.0.65372-0	2008	*
Phylogeny	Lactobacillus nagelii sp. nov., an organism isolated from a partially fermented wine.	Edwards CG, Collins MD, Lawson PA, Rodriguez AV	Int J Syst Evol Microbiol	10.1099/00207713-50-2-699	2000	*

References

#4951

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13675

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39913 ; Curators of the CIP;
#55947 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 43575

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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