Liquorilactobacillus nagelii (DSM 13675, ATCC 700692, CCUG 43575)

Name: Liquorilactobacillus nagelii (DSM 13675, ATCC 700692, CCUG 43575)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6586

Type strain

Strain Designation LuE10, LuE₁₀

Culture col. no. DSM 13675 ATCC 700692 CCUG 43575 JCM 12492 LuE10 3 more

NCBI tax ID(s) 1122150 82688

Special Collections DSMZ CCUG JCM KCTC CIP

History <- ATCC <- C.G. Edwards; LuE₁₀ CCUG 43575 <-- ATCC 700692 <-- C. G. Edwards LuE₁₀. CIP <- 2002, ATCC <- C.G. Edwards: strain LuE10

Links

Liquorilactobacillus nagelii LuE10 is an anaerobe, Gram-positive, rod-shaped bacterium that was isolated from partially fermented wine.

Gram-positive rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 44084

ATCC 700692,DSM 13675,CCUG 43575,LMG 21593,CECT 5983,JCM 12492,NCIMB 14038,CIP 107647

@ref 20215

Last LPSN update 2026-02-09 11:19:15

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Liquorilactobacillus

Species Liquorilactobacillus nagelii

Full scientific name Liquorilactobacillus nagelii (Edwards et al. 2000) Zheng et al. 2020

Synonyms (1)

Lactobacillus nagelii

BacDive ID	Other strains from **Liquorilactobacillus nagelii** (1)	Type strain
24126	L. nagelii TPM-B2, DSM 13138

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
121223	positive	rod-shaped
125439	positive			91.9

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4951	MRS MEDIUM (DSMZ Medium 11)	Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
39913	MEDIUM 40- for Lactobacillus and Leuconostoc		Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
121223	CIP Medium 40	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
4951	positive	growth	30
39913	positive	growth	30
55947	positive	growth	30-37
67770	positive	growth	37
121223	positive	growth	10-45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
55947	anaerobe
121223	facultative anaerobe
125439	microaerophile	97.7

Murein

@ref	Murein short key	Type
4951	A31	A1gamma m-Dpm-direct

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	+	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
121223	17632 ChEBI	nitrate	-	reduction
121223	17632 ChEBI	nitrate	+	respiration
121223	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
121223	15688 ChEBI	acetoin	+

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
121223	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121223	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
121223	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121223	ornithine decarboxylase	-	4.1.1.17
121223	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121223	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
4951	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+	+/-	-	-	+/-	-	-	-	+	-	-	+	+/-	+	+	-	-	+	+	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-
121223	not determinedn.d.	-	-	-	-	+/-	-	-	-	-	+	+	+	+	+	+	-	-	+	+/-	-	+	+	+/-	-	+/-	+	+/-	+	-	-	+	+	-	-	-	-	-	-	+/-	-	-	+/-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Fermented
#Engineered	#Food production	#Beverage

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
4951	partially fermented wine		USA	USA	North America
55947	Commercial red wine	CA,Napa	USA	USA	North America
67770	Wines undergoing sluggish/stuck alcoholic fermentation
121223	Food, Partially fermented wine		United States of America	USA	North America	1997

Taxonmaps

69479

Global distribution of 16S sequence LC383821 (>99% sequence identity) for Liquorilactobacillus nagelii from Microbeatlas

Aquatic Samples	972
Soil Samples	182
Animal Samples	3814
Plant Samples	256
Total Samples	5224

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4951	1	Risk group (German classification) According to TRBA 466
121223	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Liquorilactobacillus nagelii DSM 13675	complete			2574179724	1122150	91.38
66792	ASM1944400v1 assembly for Liquorilactobacillus nagelii DSM 13675	chromosome	GCA_019444005	1122150.23	8002248843	1122150	87.01
67770	ASM143422v1 assembly for Liquorilactobacillus nagelii DSM 13675	scaffold	GCA_001434225	1122150.3	2660238052	1122150	67.37

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
4951	Lactobacillus sp. LuE10 16S rRNA gene	Y17500	1100	82688
67770	Lactobacillus nagelii JCM 12492 gene for 16S ribosomal RNA, partial sequence	LC383821	1499	82688
124043	Lactobacillus nagelii gene for 16S rRNA, partial sequence, strain: JCM 12492.	AB289206	623	82688
124043	Lactobacillus nagelii gene for 16S ribosomal RNA, partial sequence, strain: JCM 12492.	AB370876	1477	82688

GC content

@ref	GC-content (mol%)	Method
67770	36.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Liquorilactobacillus nagelii DSM 13675
NCBI: GCA_001434225

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	97.70	no
125439	gram_stain	BacteriaNetⓘ	positive	91.90	no
125439	motility	BacteriaNetⓘ	no	56.60	no
125439	spore_formation	BacteriaNetⓘ	no	71.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Liquorilactobacillus nagelii DSM 13675
PATRIC: 1122150.23

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.96	no
125438	anaerobic	anaerobicⓘ	no	82.84	no
125438	spore-forming	spore-formingⓘ	no	72.15	no
125438	aerobic	aerobicⓘ	no	93.73	yes
125438	thermophilic	thermophileⓘ	no	93.73	no
125438	flagellated	motile2+ⓘ	yes	55.49	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Chemical, Microbiological, and Functional Characterization of Kefir Produced from Cow's Milk and Soy Milk.	Gamba RR, Yamamoto S, Abdel-Hamid M, Sasaki T, Michihata T, Koyanagi T, Enomoto T.	Int J Microbiol	10.1155/2020/7019286	2020
Phylogeny	Lactobacillus ceti sp. nov., isolated from beaked whales (Ziphius cavirostris).	Vela AI, Fernandez A, Espinosa de los Monteros A, Goyache J, Herraez P, Tames B, Cruz F, Dominguez L, Fernandez-Garayzabal JF	Int J Syst Evol Microbiol	10.1099/ijs.0.65372-0	2008
Phylogeny	Lactobacillus nagelii sp. nov., an organism isolated from a partially fermented wine.	Edwards CG, Collins MD, Lawson PA, Rodriguez AV	Int J Syst Evol Microbiol	10.1099/00207713-50-2-699	2000

References

#4951	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13675
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#39913	; Curators of the CIP;
#55947	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 43575
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121223	Collection of Institut Pasteur ; Curators of the CIP; CIP 107647
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Liquorilactobacillus nagelii (DSM 13675, ATCC 700692, CCUG 43575)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Murein

Metabolite utilization

Metabolite tests

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_019444005

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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