Name: Liquorilactobacillus nagelii LuE10
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6586

Type strain:

Species: Liquorilactobacillus nagelii

Strain Designation: LuE10, LuE₁₀

Culture col. no.: DSM 13675, ATCC 700692, CCUG 43575, JCM 12492, KCTC 21009, CIP 107647

Strain history: CIP <- 2002, ATCC <- C.G. Edwards: strain LuE10

NCBI tax ID(s): 1122150 (strain), 82688 (species)

SI-ID 44084

ATCC 700692, DSM 13675, CCUG 43575, LMG 21593, CECT 5983, JCM 12492, NCIMB 14038, CIP 107647

Special Collections

Other strains from Liquorilactobacillus nagelii

Section

When using BacDive for research please cite our paper

Liquorilactobacillus nagelii LuE10 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from partially fermented wine.

Gram-positive
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Liquorilactobacillus*
	Species	**Liquorilactobacillus nagelii**
	Full Scientific Name (LPSN)	Liquorilactobacillus nagelii (Edwards et al. 2000) Zheng et al. 2020

Synonym

Lactobacillus nagelii

Information on morphological and physiological properties Morphology

[Ref.: #121223]	Gram stain	positive
[Ref.: #125439]	Gram stain	positive Confidence in %91.9

[Ref.: #121223]	Cell shape	rod-shaped

[Ref.: #121223]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4951]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #4951]

Culture medium growth

[Ref.: #4951]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4951]

Culture medium composition

expand / minimize

[Ref.: #39913]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #39913]

Culture medium growth

[Ref.: #39913]

Culture medium composition

expand / minimize

[Ref.: #121223]

Culture medium

CIP Medium 40

[Ref.: #121223]

Culture medium growth

[Ref.: #121223]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #4951]	growth	30 °C
[Ref.: #39913]	growth	30 °C
[Ref.: #55947]	growth	30-37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #121223]	growth	10-45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #55947]	Oxygen tolerance	anaerobe
[Ref.: #121223]	Oxygen tolerance	facultative anaerobe
[Ref.: #125439]	Oxygen tolerance	microaerophile Confidence in %97.7

[Ref.: #4951]	Murein short key	A31
[Ref.: #4951]	Murein types	A1gamma m-Dpm-direct

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #121223]	nitrate ChEBI	-	reduction
[Ref.: #121223]	nitrate ChEBI	+	respiration
[Ref.: #121223]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #121223]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #121223]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121223]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121223]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121223]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121223]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #4951]	15109	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+	+/-	-	-	+/-	-	-	-	+	-	-	+	+/-	+	+	-	-	+	+	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-
[Ref.: #121223]	11075	not determinedn.d.	-	-	-	-	+/-	-	-	-	-	+	+	+	+	+	+	-	-	+	+/-	-	+	+	+/-	-	+/-	+	+/-	+	-	-	+	+	-	-	-	-	-	-	+/-	-	-	+/-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121223]	10537	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4951]	Sample type/isolated from	partially fermented wine
[Ref.: #4951]	Country	USA
[Ref.: #4951]	Country ISO 3 Code	USA
[Ref.: #4951]	Continent	North America

[Ref.: #55947]	Sample type/isolated from	Commercial red wine
[Ref.: #55947]	Geographic location (country and/or sea, region)	CA,Napa
[Ref.: #55947]	Country	USA
[Ref.: #55947]	Country ISO 3 Code	USA
[Ref.: #55947]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Wines undergoing sluggish/stuck alcoholic fermentation

[Ref.: #121223]	Sample type/isolated from	Food, Partially fermented wine
[Ref.: #121223]	Country	United States of America
[Ref.: #121223]	Country ISO 3 Code	USA
[Ref.: #121223]	Continent	North America
[Ref.: #121223]	Isolation date	1997
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Fermented
#Engineered	#Food production	#Beverage

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC383821 (>99% sequence identity) for Liquorilactobacillus nagelii from Microbeatlas

Aquatic Samples	972
Soil Samples	182
Animal Samples	3814
Plant Samples	256
Total Samples	5224

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4951]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121223]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus nagelii JCM 12492 gene for 16S ribosomal RNA, partial sequence	LC383821	1499	GenBank ENA	82688 tax ID
[Ref.: #4951]	Lactobacillus sp. LuE10 16S rRNA gene	Y17500	1100	GenBank ENA	82688 tax ID
[Ref.: #124043]	Lactobacillus nagelii gene for 16S ribosomal RNA, partial sequence, strain: JCM 12492.	AB370876	1477	GenBank ENA	82688 tax ID	*
[Ref.: #124043]	Lactobacillus nagelii gene for 16S rRNA, partial sequence, strain: JCM 12492.	AB289206	623	GenBank ENA	82688 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Liquorilactobacillus nagelii DSM 13675	GCA_001434225	scaffold	GenBank ENA	1122150 tax ID
[Ref.: #66792]	Liquorilactobacillus nagelii DSM 13675	GCA_019444005	chromosome	GenBank ENA	1122150 tax ID	*
[Ref.: #66792]	Lactobacillus nagelii DSM 13675	1122150.3	wgs	PATRIC	1122150 tax ID	*
[Ref.: #66792]	Liquorilactobacillus nagelii DSM 13675	1122150.23	complete	PATRIC	1122150 tax ID	*
[Ref.: #66792]	Liquorilactobacillus nagelii DSM 13675	2574179724	draft	JGI IMG/M	1122150 tax ID	*
[Ref.: #66792]	Liquorilactobacillus nagelii DSM 13675	2660238052	draft	JGI IMG/M	1122150 tax ID	*

[Ref.: #67770]

GC-content

36.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Liquorilactobacillus nagelii DSM 13675 PATRIC: 1122150.23
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	89.964	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	82.839	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	72.148	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	93.732	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	93.73	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	55.493	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Liquorilactobacillus nagelii DSM 13675 NCBI: GCA_001434225
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	microaerophile	97.7
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	91.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	56.6
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	71

Availability in culture collections External links

[Ref.: #4951]

Culture collection no.

DSM 13675, ATCC 700692, CCUG 43575, JCM 12492, KCTC 21009, CIP 107647

[Ref.: #76060]

SI-ID 44084

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus ceti sp. nov., isolated from beaked whales (Ziphius cavirostris).	Vela AI, Fernandez A, Espinosa de los Monteros A, Goyache J, Herraez P, Tames B, Cruz F, Dominguez L, Fernandez-Garayzabal JF	Int J Syst Evol Microbiol	10.1099/ijs.0.65372-0	2008	*
Phylogeny	Lactobacillus nagelii sp. nov., an organism isolated from a partially fermented wine.	Edwards CG, Collins MD, Lawson PA, Rodriguez AV	Int J Syst Evol Microbiol	10.1099/00207713-50-2-699	2000	*

References

#4951

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13675

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#39913 ; Curators of the CIP;
#55947 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 43575

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#76060

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44084.1 )

#121223 Collection of Institut Pasteur ; Curators of the CIP; CIP 107647

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Liquorilactobacillus nagelii in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Liquorilactobacillus nagelii DSM 13675

Liquorilactobacillus nagelii DSM 13675

Change proposal

Change proposal