Lactobacillus gallinarum | Type strain | CCUG 30724, JCM 2011, CCM 4383, CIP 103611, DSM 10532, ATCC 33199, NCFB 2235, VPI 1294

Strain identifier

BacDive ID: 6565

Type strain:

Species: Lactobacillus gallinarum

Culture col. no.: CCUG 30724, JCM 2011, CCM 4383, CIP 103611, DSM 10532, ATCC 33199, NCFB 2235, VPI 1294

Strain history: <- NCFB <- J.L. Johnson, VPI 1294

Section

Name and taxonomic classification
Culture and growth conditions
Physiology and metabolism
Isolation, sampling and environmental information
Safety information
Sequence information

External links

Lactobacillus gallinarum CCUG 30724 is an anaerobe, mesophilic bacterium that was isolated from chicken crop.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Firmicutes
	Class	Bacilli
	Order	Lactobacillales
	Family	Lactobacillaceae
	Genus	Lactobacillus
	Species	Lactobacillus gallinarum
	Full Scientific Name (PNU)	Lactobacillus gallinarum Fujisawa et al. 1992

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #3967]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #3967]

Culture medium growth

[Ref.: #3967]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #38134]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #38134]

Culture medium growth

[Ref.: #38134]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #3967]	growth	37 ̊C
[Ref.: #38134]	growth	37 ̊C
[Ref.: #50245]	growth	37 ̊C

[Ref.: #3967]	Temperature range	mesophilic
[Ref.: #38134]	Temperature range	mesophilic
[Ref.: #50245]	Temperature range	mesophilic

Information on physiology and metabolismPhysiology and metabolism

[Ref.: #50245]

Oxygen tolerance

anaerobe

[Ref.: #3967]	Murein short key	A11.31
[Ref.: #3967]	Murein types	A4alpha L-Lys-D-Asp

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #3967]	5568	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	-	+	-	+	+	+	+	+	-	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #3967]	Sample type/isolated from	chicken crop
[Ref.: #3967]	Country	USA
[Ref.: #3967]	Country ISO 3 Code	USA
[Ref.: #3967]	Continent	North America

[Ref.: #50245]	Sample type/isolated from	Chicken crop

Isolation sources categories

#Engineered	#Agriculture	-
#Host	#Birds	#Chicken

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsSafety information

[Ref.: #3967]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Lactobacillus gallinarum 16S rRNA gene, strain ATCC 3319	AJ242968	1533	ENA	52242 tax ID	*
[Ref.: #20218]	Lactobacillus gallinarum partial 16S rRNA gene and internal transcribed spacer 1 (ITS1), strain ATCC 33199	AJ417737	1606	ENA	52242 tax ID	*
[Ref.: #20218]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EF412999	497	ENA	52242 tax ID	*
[Ref.: #20218]	L.gallinarum 16S rRNA gene, partial	X97898	626	ENA	52242 tax ID	*
[Ref.: #20218]	L.crispatus 16S rRNA gene, partial	X98052	652	ENA	47770 tax ID	*
[Ref.: #20218]	Lactobacillus gallinarum partial 16S rRNA gene, type strain ATCC 33199T	FR683086	1518	ENA	52242 tax ID	*
[Ref.: #20218]	Lactobacillus gallinarum strain DSM 10532 16S ribosomal RNA gene, partial sequence	EF468093	419	ENA	52242 tax ID	*
[Ref.: #20218]	Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: YIT 0218 (= JCM 2011)	AB008208	1532	ENA	52242 tax ID	*
[Ref.: #20218]	Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: JCM 2011	AB289122	667	ENA	52242 tax ID	*
[Ref.: #20218]	Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: JCM 2011	AB596947	1486	ENA	52242 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lactobacillus gallinarum HFD4	GCA_001314245	complete	GenBank	52242 tax ID	*
[Ref.: #66792]	Lactobacillus gallinarum DSM 10532 = JCM 2011	GCA_001434975	scaffold	GenBank	1423748 tax ID	*
[Ref.: #66792]	Lactobacillus gallinarum DSM 10532 = JCM 2011	GCA_000614735	contig	GenBank	1423748 tax ID	*
[Ref.: #66792]	Lactobacillus gallinarum An101	GCA_002161165	contig	GenBank	52242 tax ID	*
[Ref.: #66792]	Lactobacillus gallinarum An115	GCA_002161035	contig	GenBank	52242 tax ID	*
[Ref.: #66792]	Lactobacillus gallinarum An119	GCA_002160975	contig	GenBank	52242 tax ID	*
[Ref.: #66792]	Lactobacillus gallinarum An153	GCA_002160635	contig	GenBank	52242 tax ID	*
[Ref.: #66792]	Lactobacillus gallinarum DSM 10532 = JCM 2011	1423748.3	wgs	PATRIC	1423748 tax ID	*
[Ref.: #66792]	Lactobacillus gallinarum JCM 2011	1236533.3	wgs	PATRIC	1423748 tax ID	*
[Ref.: #66792]	Lactobacillus gallinarum strain An101	52242.8	wgs	PATRIC	52242 tax ID	*
[Ref.: #66792]	Lactobacillus gallinarum strain An115	52242.7	wgs	PATRIC	52242 tax ID	*
[Ref.: #66792]	Lactobacillus gallinarum strain An119	52242.6	wgs	PATRIC	52242 tax ID	*
[Ref.: #66792]	Lactobacillus gallinarum strain An153	52242.5	wgs	PATRIC	52242 tax ID	*
[Ref.: #66792]	Lactobacillus gallinarum strain HFD4	52242.4	complete	PATRIC	52242 tax ID	*
[Ref.: #66792]	Lactobacillus gallinarum strain HFD4	52242.10	plasmid	PATRIC	52242 tax ID	*
[Ref.: #66792]	Lactobacillus gallinarum strain HFD4	52242.11	plasmid	PATRIC	52242 tax ID	*
[Ref.: #66792]	Lactobacillus gallinarum strain HFD4	52242.13	plasmid	PATRIC	52242 tax ID	*
[Ref.: #66792]	Lactobacillus gallinarum strain HFD4	52242.14	plasmid	PATRIC	52242 tax ID	*
[Ref.: #66792]	Lactobacillus gallinarum strain HFD4	52242.12	plasmid	PATRIC	52242 tax ID	*

[Ref.: #3967]

GC-content

35.9 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collectionsExternal links

[Ref.: #3967]

Culture collection no.

CCUG 30724, JCM 2011, CCM 4383, CIP 103611, DSM 10532, ATCC 33199, NCFB 2235, VPI 1294

[Ref.: #20218]

Associated Passport(s) in StrainInfo

13031, 13028, 13033

References

#3967

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10532

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38134 ; Curators of the CIP;
#50245 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30724

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These References are textmined

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