Lactobacillus gallinarum (CCUG 30724, JCM 2011, CCM 4383)

Name: Lactobacillus gallinarum (CCUG 30724, JCM 2011, CCM 4383)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6565

Type strain

Strain Designation 7 CCr87

Culture col. no. CCUG 30724 JCM 2011 CCM 4383 CIP 103611 DSM 10532 8 more

NCBI tax ID(s) 1423748 52242

Special Collections DSMZ CCUG JCM KCTC CIP

History <- NCFB <- J.L. Johnson, VPI 1294 ATCC 33199 <-- VPI 1294. CIP <- 1992, F. Gasser, Inst. Pasteur, Paris, France, Lactobacillus acidophilus, group A4 <- J.L. Johnson, Blacksburg, USA: strain VPI 1294 <- W.E.C. Moore, Blacksburg, USA: strain 7 CCr87

Links

Lactobacillus gallinarum 7 CCr87 is an anaerobe, Gram-positive, rod-shaped bacterium that was isolated from chicken crop.

Gram-positive rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 3188

LMG 9435,ATCC 33199,CCM 4383,CIP 103611,DSM 10532,JCM 2011,NCFB 2235,CCUG 30724,NCIMB 13223,NCDO2235,BCRC 17266,CCRC 17266,KCTC 5048

@ref 20215

Last LPSN update 2026-02-09 11:19:15

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Lactobacillus

Species Lactobacillus gallinarum

Full scientific name Lactobacillus gallinarum Fujisawa et al. 1992

BacDive ID	Other strains from **Lactobacillus gallinarum** (10)	Type strain
135313	L. gallinarum F41, CIP 103651
136233	L. gallinarum CIP 103612, VPI 2164A
138813	L. gallinarum T50, CIP 103650
146548	L. gallinarum CCUG 31412, JCM 8782
160425	L. gallinarum Cla-CZ-63, DSM 109013
160925	L. gallinarum JCM 1036, KCTC 3153, LMG 18181
165952	L. gallinarum JCM 8783
165953	L. gallinarum JCM 8784
165954	L. gallinarum JCM 8785
165955	L. gallinarum JCM 8786

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
119516	positive	rod-shaped
125438			91.5
125438	positive		93.795

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3967	MRS MEDIUM (DSMZ Medium 11)	Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
38134	MEDIUM 40- for Lactobacillus and Leuconostoc		Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
119516	CIP Medium 40	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
3967	positive	growth	37
38134	positive	growth	37
50245	positive	growth	37
67770	positive	growth	37
119516	positive	growth	37-45
119516	negative	growth	15

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
50245	anaerobe
119516	facultative anaerobe
125439	obligate aerobe	94.5

Spore formation

@ref	Spore formation	Confidence
125438		92.349

Murein

@ref	Murein short key	Type
3967	A11.31	A4alpha L-Lys-D-Asp

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	+	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
119516	17632 ChEBI	nitrate	-	reduction
119516	17632 ChEBI	nitrate	+	respiration
119516	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
119516	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
119516	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
119516	alcohol dehydrogenase	-	1.1.1.1
119516	catalase	-	1.11.1.6
119516	lysine decarboxylase	-	4.1.1.18
119516	ornithine decarboxylase	-	4.1.1.17
119516	oxidase	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
3967	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	-	+	-	+	+	+	+	+	-	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	-
#Host	#Birds	#Chicken

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
3967	chicken crop		USA	USA	North America
50245	Chicken crop
67770	Chicken crop
119516	Animal, Normal chicken crop	Blacksburg, Virginia	United States of America	USA	North America	1964

Taxonmaps

69479

Global distribution of 16S sequence LC071810 (>99% sequence identity) for Lactobacillus from Microbeatlas

Aquatic Samples	2250
Soil Samples	2173
Animal Samples	42256
Plant Samples	765
Total Samples	47444

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3967	1	Risk group (German classification) According to TRBA 466
119516	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM143497v1 assembly for Lactobacillus gallinarum DSM 10532 = JCM 2011	scaffold	GCA_001434975	1423748.3	2663762633	1423748	59.4
67770	ASM61473v1 assembly for Lactobacillus gallinarum DSM 10532 = JCM 2011	contig	GCA_000614735	1236533.3	2585427877	1423748	33.41

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Lactobacillus gallinarum 16S rRNA gene, strain ATCC 3319	AJ242968	1533	52242
20218	Lactobacillus gallinarum partial 16S rRNA gene and internal transcribed spacer 1 (ITS1), strain ATCC 33199	AJ417737	1606	52242
20218	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EF412999	497	52242
20218	L.gallinarum 16S rRNA gene, partial	X97898	626	52242
20218	L.crispatus 16S rRNA gene, partial	X98052	652	47770
20218	Lactobacillus gallinarum partial 16S rRNA gene, type strain ATCC 33199T	FR683086	1518	52242
20218	Lactobacillus gallinarum strain DSM 10532 16S ribosomal RNA gene, partial sequence	EF468093	419	52242
20218	Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: YIT 0218 (= JCM 2011)	AB008208	1532	52242
20218	Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: JCM 2011	AB289122	667	52242
20218	Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: JCM 2011	AB596947	1486	52242
67770	Lactobacillus gallinarum gene for 16S ribosomal RNA, partial sequence, strain: JCM 2011	LC071810	1460	52242
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412975	1538	1598
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412976	1538	1598
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412977	1534	1598
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412978	1488	47493
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412979	1535	1580
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412980	1530	1580
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412981	1525	1580
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412982	1526	1580
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412983	1528	1580
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412984	1531	52242
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412985	1529	52242
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412986	1536	1624
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412987	545	1598
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412988	539	1598
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412989	539	1598
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412990	543	47493
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412991	550	1580
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412992	550	1580
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412993	550	1580
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412994	550	1580
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412995	550	1580
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412996	538	52242
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412997	537	52242
124043	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412998	541	1624
124043	Lactobacillus gallinarum strain JCM 2011 16S ribosomal RNA gene, partial sequence.	MN587971	980	52242

GC content

@ref	GC-content (mol%)	Method
3967	35.9	thermal denaturation, midpoint method (Tm)
67770	36.5	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lactobacillus gallinarum DSM 10532 = JCM 2011
NCBI: GCA_001434975

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.50	no
125439	gram_stain	BacteriaNetⓘ	positive	75.90	no
125439	motility	BacteriaNetⓘ	no	51.10	no
125439	spore_formation	BacteriaNetⓘ	yes	62.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus gallinarum DSM 10532 = JCM 2011
PATRIC: 1423748.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.80	no
125438	anaerobic	anaerobicⓘ	no	65.52	no
125438	spore-forming	spore-formingⓘ	no	92.35	no
125438	thermophilic	thermophileⓘ	no	96.00	yes
125438	aerobic	aerobicⓘ	no	96.55	yes
125438	flagellated	motile2+ⓘ	no	91.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Susceptibility of Lactobacillaceae Strains to Aminoglycoside Antibiotics in the Light of EFSA Guidelines.	Dec M, Herman-Ostrzyzek K, Zomer A, Urban-Chmiel R.	Life (Basel)	10.3390/life15050732	2025
Genetics	Characterization and genome analysis of the novel virulent Burkholderia phage Bm1, which is active against pan-drug-resistant Burkholderia multivorans.	Rubalskii E, Sedlacek L, Hegermann J, Knegendorf L, Salmoukas C, Mueller C, Schwerk N, Schluter D, Ruhparwar A, Kuehn C, Ruemke S.	Arch Virol	10.1007/s00705-025-06282-w	2025
	Evaluation of a Method for Standardized Antimicrobial Susceptibility Testing with Mycoplasma hyorhinis Field Isolates.	Kabisch L, Schink AK, Hoeltig D, Verspohl J, Gyuranecz M, Spergser J, Kehrenberg C, Schwarz S.	Microorganisms	10.3390/microorganisms11122881	2023
	Chemical, Microbiological, and Functional Characterization of Kefir Produced from Cow's Milk and Soy Milk.	Gamba RR, Yamamoto S, Abdel-Hamid M, Sasaki T, Michihata T, Koyanagi T, Enomoto T.	Int J Microbiol	10.1155/2020/7019286	2020
	Synthesis of Second-Generation Analogs of Temporin-SHa Peptide Having Broad-Spectrum Antibacterial and Anticancer Effects.	Khan AI, Nazir S, Haque MNU, Maharjan R, Khan FA, Olleik H, Courvoisier-Dezord E, Maresca M, Shaheen F.	Antibiotics (Basel)	10.3390/antibiotics13080758	2024
Enzymology	Antimicrobial peptide plectasin recombinantly produced in Escherichia coli disintegrates cell walls of gram-positive bacteria, as proven by transmission electron and atomic force microscopy.	Muller M, Mayrhofer S, Sudjarwo WAA, Gibisch M, Tauer C, Berger E, Brocard C, Toca-Herrera JL, Striedner G, Hahn R, Cserjan-Puschmann M.	J Bacteriol	10.1128/jb.00456-24	2025
	Towards a Standardized Antimicrobial Susceptibility Testing Method for Mycoplasma hyorhinis.	Kabisch L, Schink AK, Holtig D, Spergser J, Kehrenberg C, Schwarz S.	Microorganisms	10.3390/microorganisms11040994	2023
	Safety and efficacy of a feed additive consisting of Propionibacterium freudenreichii DSM 33189 and Lentilactobacillus buchneri (formerly Lactobacillus buchneri) DSM 12856 for all animal species (Lactosan GmbH & Co.KG.).	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, Bastos ML, Christensen H, Dusemund B, Fasmon Durjava M, Kouba M, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Sanz Y, Villa RE, Woutersen R, Brozzi R, Galobart J, Innocenti M, Revez J.	EFSA J	10.2903/j.efsa.2022.7151	2022
Genetics	Putrescine Production by Latilactobacillus curvatus KP 3-4 Isolated from Fermented Foods.	Hirano R, Kume A, Nishiyama C, Honda R, Shirasawa H, Ling Y, Sugiyama Y, Nara M, Shimokawa H, Kawada H, Koyanagi T, Ashida H, Okuda S, Matsumoto M, Takagi H, Kurihara S.	Microorganisms	10.3390/microorganisms10040697	2022
	Lacticaseibacillus rhamnosus CA15 (DSM 33960) as a Candidate Probiotic Strain for Human Health.	Pino A, Vaccalluzzo A, Caggia C, Balzaretti S, Vanella L, Sorrenti V, Ronkainen A, Satokari R, Randazzo CL.	Nutrients	10.3390/nu14224902	2022
	Amplicon Sequencing of the slpH Locus Permits Culture-Independent Strain Typing of Lactobacillus helveticus in Dairy Products.	Moser A, Wuthrich D, Bruggmann R, Eugster-Meier E, Meile L, Irmler S.	Front Microbiol	10.3389/fmicb.2017.01380	2017
	Evaluation and comparison of antibiotic susceptibility profiles of Streptomyces spp. from clinical specimens revealed common and region-dependent resistance patterns.	Kotrbova L, Lara AC, Corretto E, Scharfen J, Ulmann V, Petrickova K, Chronakova A.	Sci Rep	10.1038/s41598-022-13094-4	2022
Pathogenicity	Exploring the Potential of Novel Animal-Origin Probiotics as Key Players in One Health: Opportunities and Challenges.	Gorzelanna Z, Mamrot A, Bedkowska D, Bubak J, Miszczak M.	Int J Mol Sci	10.3390/ijms26115143	2025
Pathogenicity	Antioxidant, Antimicrobial, and Other Biological Properties of Pompia Juice.	Barberis A, Deiana M, Spissu Y, Azara E, Fadda A, Serra PA, D'hallewin G, Pisano M, Serreli G, Orru G, Scano A, Steri D, Sanjust E.	Molecules	10.3390/molecules25143186	2020
Metabolism	Antimicrobial peptide gramicidin S is accumulated in granules of producer cells for storage of bacterial phosphagens.	Berditsch M, Trapp M, Afonin S, Weber C, Misiewicz J, Turkson J, Ulrich AS.	Sci Rep	10.1038/srep44324	2017
	Therapeutic Potential of Gramicidin S in the Treatment of Root Canal Infections.	Berditsch M, Lux H, Babii O, Afonin S, Ulrich AS.	Pharmaceuticals (Basel)	10.3390/ph9030056	2016
Metabolism	Identification of and hydrogen peroxide production by fecal and vaginal lactobacilli isolated from Japanese women and newborn infants.	Song YL, Kato N, Matsumiya Y, Liu CX, Kato H, Watanabe K.	J Clin Microbiol	10.1128/jcm.37.9.3062-3064.1999	1999
	Biosynthetic potential of the global ocean microbiome.	Paoli L, Ruscheweyh HJ, Forneris CC, Hubrich F, Kautsar S, Bhushan A, Lotti A, Clayssen Q, Salazar G, Milanese A, Carlstrom CI, Papadopoulou C, Gehrig D, Karasikov M, Mustafa H, Larralde M, Carroll LM, Sanchez P, Zayed AA, Cronin DR, Acinas SG, Bork P, Bowler C, Delmont TO, Gasol JM, Gossert AD, Kahles A, Sullivan MB, Wincker P, Zeller G, Robinson SL, Piel J, Sunagawa S.	Nature	10.1038/s41586-022-04862-3	2022
Metabolism	Lactic acid fermentation as a tool to enhance the functional features of Echinacea spp.	Rizzello CG, Coda R, Macias DS, Pinto D, Marzani B, Filannino P, Giuliani G, Paradiso VM, Di Cagno R, Gobbetti M.	Microb Cell Fact	10.1186/1475-2859-12-44	2013
Enzymology	DNA microarray-based detection and identification of fungal pathogens in clinical samples from neutropenic patients.	Spiess B, Seifarth W, Hummel M, Frank O, Fabarius A, Zheng C, Morz H, Hehlmann R, Buchheidt D.	J Clin Microbiol	10.1128/jcm.00942-07	2007
Phylogeny	Design of PCR assays to specifically detect and identify 37 Lactobacillus species in a single 96 well plate.	Kim E, Yang SM, Lim B, Park SH, Rackerby B, Kim HY.	BMC Microbiol	10.1186/s12866-020-01781-z	2020
Phylogeny	Using glycolysis enzyme sequences to inform Lactobacillus phylogeny.	Brandt K, Barrangou R.	Microb Genom	10.1099/mgen.0.000187	2018
Metabolism	Functional Analysis of an S-Layer-Associated Fibronectin-Binding Protein in Lactobacillus acidophilus NCFM.	Hymes JP, Johnson BR, Barrangou R, Klaenhammer TR.	Appl Environ Microbiol	10.1128/aem.00024-16	2016
	Lactobacillus gallinarum-derived metabolites boost anti-PD1 efficacy in colorectal cancer by inhibiting regulatory T cells through modulating IDO1/Kyn/AHR axis.	Fong W, Li Q, Ji F, Liang W, Lau HCH, Kang X, Liu W, To KK, Zuo Z, Li X, Zhang X, Sung JJ, Yu J.	Gut	10.1136/gutjnl-2023-329543	2023
	Lactobacillus gallinarum modulates the gut microbiota and produces anti-cancer metabolites to protect against colorectal tumourigenesis.	Sugimura N, Li Q, Chu ESH, Lau HCH, Fong W, Liu W, Liang C, Nakatsu G, Su ACY, Coker OO, Wu WKK, Chan FKL, Yu J.	Gut	10.1136/gutjnl-2020-323951	2021
	Genome-based species-specific primers for rapid identification of six species of Lactobacillus acidophilus group using multiplex PCR.	You I, Kim EB.	PLoS One	10.1371/journal.pone.0230550	2020
	Probiotics and Postbiotics as Substitutes of Antibiotics in Farm Animals: A Review.	Zamojska D, Nowak A, Nowak I, Macierzynska-Piotrowska E.	Animals (Basel)	10.3390/ani11123431	2021
Phylogeny	Detection and identification of Lactobacillus species in crops of broilers of different ages by using PCR-denaturing gradient gel electrophoresis and amplified ribosomal DNA restriction analysis.	Guan LL, Hagen KE, Tannock GW, Korver DR, Fasenko GM, Allison GE.	Appl Environ Microbiol	10.1128/aem.69.11.6750-6757.2003	2003
Metabolism	Detection, characterization, and in vitro and in vivo expression of genes encoding S-proteins in Lactobacillus gallinarum strains isolated from chicken crops.	Hagen KE, Guan LL, Tannock GW, Korver DR, Allison GE.	Appl Environ Microbiol	10.1128/aem.71.11.6633-6643.2005	2005
Enzymology	Quantitative analysis of diverse Lactobacillus species present in advanced dental caries.	Byun R, Nadkarni MA, Chhour KL, Martin FE, Jacques NA, Hunter N.	J Clin Microbiol	10.1128/jcm.42.7.3128-3136.2004	2004
Metabolism	Production of organic acids by probiotic lactobacilli can be used to reduce pathogen load in poultry.	Neal-McKinney JM, Lu X, Duong T, Larson CL, Call DR, Shah DH, Konkel ME.	PLoS One	10.1371/journal.pone.0043928	2012
Metabolism	Lactobacillus surface layer proteins: structure, function and applications.	Hynonen U, Palva A.	Appl Microbiol Biotechnol	10.1007/s00253-013-4962-2	2013
Phylogeny	Fecal microbiome associated with egg production efficiency in laying hens.	Chen JW, Wang SY, Yang WY.	Anim Biosci	10.5713/ab.25.0256	2025
Pathogenicity	Lactobacillus gallinarum improves broiler performance by enhancing antioxidant capacity and regulating intestinal microbiota.	Zhou X, You Y, Ren L, Akhtar M, Ji H, Wang T, Meng N, Fan X, Yang S, Zhou Z, Xiao Y, Shi D.	Poult Sci	10.1016/j.psj.2025.105537	2025
	Anticancer effect of a combinatorial treatment of 5-fluorouracil and cell extract of some probiotic lactobacilli strains isolated from camel milk on colorectal cancer cells.	Salek S, Moazamian E, Mohammadi Bardbori A, Shamsdin SA.	Folia Microbiol (Praha)	10.1007/s12223-024-01228-2	2025
Genetics	Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product.	Shangpliang HNJ, Tamang JP.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2023.110300	2023
	Serum CA19-9 and CEA levels, serum CAT, GSH, oxidised glutathione levels, 8-dihidro-2'-deoksiguanosina and F2-isoprostanes levels in colorectal cancer patients and Lactobacillus: A randomised double-blind controlled trial.	Chen S, Ning W, Zhang J, Wu Z, Zhou H, Liu Y.	J Med Biochem	10.5937/jomb0-56528	2025
	Contact with adult hens affects the composition of skin and respiratory tract microbiota in newly hatched chicks.	Faldynova M, Prikrylova H, Sebkova A, Volf J, Karasova D, Crhanova M, Babak V, Rychlik I.	Poult Sci	10.1016/j.psj.2023.103302	2024
Phylogeny	Rapid identification of lactic acid bacteria at species/subspecies level via ensemble learning of Ramanomes.	Ren Y, Zheng Y, Wang X, Qu S, Sun L, Song C, Ding J, Ji Y, Wang G, Zhu P, Cheng L.	Front Microbiol	10.3389/fmicb.2024.1361180	2024
Pathogenicity	Probiotics: an Antibiotic Replacement Strategy for Healthy Broilers and Productive Rearing.	Neveling DP, Dicks LMT.	Probiotics Antimicrob Proteins	10.1007/s12602-020-09640-z	2021
Enzymology	Occurrence of bacteria with technological and probiotic potential in Argentinian human breast-milk.	Oddi S, Binetti A, Burns P, Cuatrin A, Reinheimer J, Salminen S, Vinderola G.	Benef Microbes	10.3920/bm2020.0054	2020
	Effect of a Multi-Species Probiotic on the Colonisation of Salmonella in Broilers.	Neveling DP, van Emmenes L, Ahire JJ, Pieterse E, Smith C, Dicks LMT.	Probiotics Antimicrob Proteins	10.1007/s12602-019-09593-y	2020
	Lactic acid bacteria isolated from Chinese traditional fermented milk as novel probiotic strains and their potential therapeutic applications.	Ismael M, Gu Y, Cui Y, Wang T, Yue F, Yantin Q, Lu X.	3 Biotech	10.1007/s13205-022-03403-z	2022
Genetics	Differential cytokine profiling and microbial species involved in cecal microbiota modulations in SPF chicks immunized with a dual vaccine against Salmonella Typhimurium infection.	Jan TR, Lin CS, Yang WY.	Poult Sci	10.1016/j.psj.2023.103334	2024
Phylogeny	Genetic and Phenotypic Characteristics of a Multi-strain Probiotic for Broilers.	Neveling DP, Ahire JJ, Laubscher W, Rautenbach M, Dicks LMT.	Curr Microbiol	10.1007/s00284-019-01797-3	2020
	Impact of Enterococcus faecium Kimate-X on Reducing Stress in Dogs Through Gut Microbiota Modulation.	Zhang R, Hu W, Zhong S, Chen W, Chen M, Yu Q.	Vet Sci	10.3390/vetsci12050412	2025
	Effects of Antimicrobial Peptides on the Growth Performance of Squabs Were Investigated Based on Microbiomics and Non-Targeted Metabolomics.	Deng L, Yao Y, Li H, Lu Q, Wu R.	Animals (Basel)	10.3390/ani15213099	2025
	Purification and characterization of a novel antibacterial peptide against Clostridium perfringens.	Novodvorski A, Kong A, Yu H, Lepp D, Brott A, Carere J, Seah S, Gong J.	Microbiology (Reading)	10.1099/mic.0.001573	2025
Genetics	Research in etiology of Floppy Kid Syndrome.	Cheng C, Zheng Y, Wang X, Tao J, Cheng D.	Front Vet Sci	10.3389/fvets.2025.1557951	2025
	Isolation of Lactobacillaceae bacteria from feces of ostrich (Struthio camelus).	Onodera M, Ban-Tokuda T, Matsui H.	J Poult Sci	10.2141/jpsa.0210001	2022
	Comparative Analysis of the Gut Microbiota of Thai Indigenous Chicken Fed House Crickets.	T-Thienprasert NP, Jaithon T, Klomkliew P, Chanchaem P, Suwanasopee T, Koonawootrittriron S, Kovitvadhi A, Chundang P, Pongprayoon P, Kityakarn S, Luksirikul P, Payungporn S.	Animals (Basel)	10.3390/ani15071070	2025
	Gut microbiota in the short-beaked echidna (Tachyglossus Aculeatus) shows stability across gestation.	Buthgamuwa I, Fenelon JC, Roser A, Meer H, Johnston SD, Dungan AM.	Microbiologyopen	10.1002/mbo3.1392	2023
	Changes in the intestinal microbiota of broiler chicken induced by dietary supplementation of the diatomite-bentonite mixture.	Wesierska E, Micek P, Adamski MG, Gondek K, Lis M, Trela M, Wojtysiak D, Kowal J, Wyrobisz-Papiewska A, Kunstman G, Mosiolek S, Smoron K.	BMC Vet Res	10.1186/s12917-024-04439-4	2025
Genetics	Deep culturing the fecal microbiota of healthy laying hens.	Feng Z, Lorenc N, O'Brien B, Sun G, Li Z, Jung D, Ronholm J.	Anim Microbiome	10.1186/s42523-025-00395-y	2025
Genetics	Unveiling the Brazilian kefir microbiome: discovery of a novel Lactobacillus kefiranofaciens (LkefirU) genome and in silico prospection of bioactive peptides with potential anti-Alzheimer properties.	Silva MH, Batista LL, Malta SM, Santos ACC, Mendes-Silva AP, Bonetti AM, Ueira-Vieira C, Dos Santos AR.	BMC Genomics	10.1186/s12864-024-10695-3	2024
	Computational microbiome pharmacology analysis elucidates the anti-cancer potential of vaginal microbes and metabolites.	Lawore DC, Jena S, Berard AR, Birse K, Lamont A, Mackelprang RD, Noel-Romas L, Perner M, Hou X, Irungu E, Mugo N, Knodel S, Muwonge TR, Katabira E, Hughes SM, Levy C, Calienes FL, Hladik F, Lingappa JR, Burgener AD, Green LN, Brubaker DK.	Front Microbiol	10.3389/fmicb.2025.1602217	2025
	Akkermansia muciniphila ameliorates chronic stress-induced colorectal tumor growth by releasing outer membrane vesicles.	Jin S, Lu Y, Zuo Y, Xu Q, Hao Y, Zuo H, Cui Z, Zhang X, Wang M, Li H, Wang S, Li Y.	Gut Microbes	10.1080/19490976.2025.2555618	2025
	Changes in broiler performance, duodenal histomorphometry, and caeca microbiota composition in response to wheat-barley based diets supplemented with non-antibiotic additives	Pineda-Quiroga C, Camarinha-Silva A, Atxaerandio R, Ruiz R, Garcia-Rodriguez A.	Anim Feed Sci Technol	10.1016/j.anifeedsci.2017.09.002	2017
Metabolism	Epacadostat Overcomes Cetuximab Resistance in Colorectal Cancer by Targeting IDO-Mediated Tryptophan Metabolism.	Zhou Y, Tao Q, Luo C, Chen J, Chen G, Sun J.	Cancer Sci	10.1111/cas.70057	2025
	Influence of fermented milk permeate containing antimicrobial Lactobacillus and galactooligosaccharides on growth performance and health parameters in neonatal piglets.	Badaras S, Starkute V, Mockus E, Ruzauskas M, Klupsaite D, Mozuriene E, Dailidaviciene J, Dauksiene A, Vadopalas L, Bartkiene E.	Front Vet Sci	10.3389/fvets.2025.1501117	2025
	Gut-derived Faecalibaculum rodentium exerts anti-cancer effects on colorectal cancer by modulating PDPN-CLEC-2 signaling pathway.	Yang X, Liu M, Wang T, Ma X, Guan Z, Ma B, Duan X, Su C.	mSystems	10.1128/msystems.00148-25	2025
	ESKAPEE Pathogen Biofilm Control on Surfaces with Probiotic Lactobacillaceae and Bacillus species.	Neidhofer C, Rathore K, Parcina M, Sieber MA.	Antibiotics (Basel)	10.3390/antibiotics12050871	2023
	Modeling the weaning diet of piglets with fermented feed material: effects on growth performance and health parameters.	Badaras S, Starkute V, Mockus E, Ruzauskas M, Klupsaite D, Mozuriene E, Dailidaviciene J, Dauksiene A, Vadopalas L, Metzler-Zebeli BU, Bartkiene E.	Front Vet Sci	10.3389/fvets.2025.1616209	2025
	Armenian Hamsters (Nothocricetulus migratorius): A New Host Susceptible to Corynebacterium bovis Infection and Disease.	Cheleuitte-Nieves C, Miranda IC, Michelson A, Walton K, Geist GE, Nickerson K, Wipf JR, Carrasco SE, Monette S, Mammone R, Lipman NS.	J Am Assoc Lab Anim Sci	10.30802/aalas-jaalas-25-054	2025
	Dietary Manipulation on Gut Microbiome in Patients with Diabetes and Colorectal cancer	Chu N.	Curr Nutr Rep		2025
	The Causal Effect of Gut Microbiota and Plasma Metabolome on Lung Cancer and the Heterogeneity across Subtypes: A Mendelian Randomization Study.	Zeng J, Yi B, Chang R, Li J, Zhu J, Yu Z, Li X, Gao Y.	J Pers Med	10.3390/jpm14050453	2024
	Effect of Glycyrrhiza uralensis extract, Lactobacillus acidophilus and their combined supplementation on production performance, immunity, antioxidation and intestinal health in broilers.	Lu J, Li S, Wu J, Chen Y, Jiang S, Zhang G.	Front Vet Sci	10.3389/fvets.2025.1675593	2025
	A probiotic Limosilactobacillus fermentum GR-3 mitigates colitis-associated tumorigenesis in mice via modulating gut microbiome.	Zhou T, Wu J, Khan A, Hu T, Wang Y, Salama ES, Su S, Han H, Jin W, Li X.	NPJ Sci Food	10.1038/s41538-024-00307-5	2024
	Crosstalk between gut microbiotas and fatty acid metabolism in colorectal cancer.	Zhang H, Tian Y, Xu C, Chen M, Xiang Z, Gu L, Xue H, Xu Q.	Cell Death Discov	10.1038/s41420-025-02364-5	2025
	MADET: a Manually Curated Knowledge Base for Microbiomic Effects on Efficacy and Toxicity of Anticancer Treatments.	Zhang J, Chen X, Zou J, Li C, Kang W, Guo Y, Liu S, Zhao W, Mou X, Huang J, Ke J.	Microbiol Spectr	10.1128/spectrum.02116-22	2022
Metabolism	Studies on the removal of Cd ions by gastrointestinal lactobacilli.	Polak-Berecka M, Boguta P, Ciesla J, Bieganowski A, Skrzypek T, Czernecki T, Wasko A.	Appl Microbiol Biotechnol	10.1007/s00253-016-8048-9	2017
	Changes in the Cervical Microbiota of Women with Different High-Risk Human Papillomavirus Loads.	Camargo M, Vega L, Munoz M, Sanchez R, Patarroyo ME, Ramirez JD, Patarroyo MA.	Viruses	10.3390/v14122674	2022
	Lactococcus lactis HkyuLL 10 suppresses colorectal tumourigenesis and restores gut microbiota through its generated alpha-mannosidase.	Su ACY, Ding X, Lau HCH, Kang X, Li Q, Wang X, Liu Y, Jiang L, Lu Y, Liu W, Ding Y, Cheung AH, To KF, Yu J.	Gut	10.1136/gutjnl-2023-330835	2024
Enzymology	Peptidoglycan hydrolases as species-specific markers to differentiate Lactobacillus helveticus from Lactobacillus gallinarum and other closely related homofermentative lactobacilli.	Jebava I, Chuat V, Lortal S, Valence F.	Curr Microbiol	10.1007/s00284-013-0512-5	2014
	Gut Parabacteroides distasonis-derived Indole-3-Acetic Acid Promotes Phospholipid Remodeling and Enhances Ferroptosis Sensitivity via the AhR-FASN Axis in Bladder Cancer.	Li W, Shangguan W, Huang W, Zhao J, Zhu Y, Xie M, Yu Y, Yang Q, Zheng J, Yang L, Sun Q, Li L, Shi X, Xiao Y, Huang H, Cheng B, Wu P.	Adv Sci (Weinh)	10.1002/advs.202504688	2025
	Effect of supplementation with Glycyrrhiza uralensis extract and Lactobacillus acidophilus on growth performance and intestinal health in broiler chickens.	Li X, Li J, Yuan H, Chen Y, Li S, Jiang S, Zha Xi Y, Zhang G, Lu J.	Front Vet Sci	10.3389/fvets.2024.1436807	2024
	Glycyrrhiza uralensis extract supplementation mitigated the negative effects of prolonged low-dose exposure to Deoxynivalenol and Zearalenone on growth performance and intestinal health of broiler chickens.	Chen Y, Zhang G, Li J, Li X, Jiang S, Zha Xi Y, Guo Y, Lu J.	Front Vet Sci	10.3389/fvets.2025.1570265	2025
	Biochemical Recurrence in Prostate Cancer Is Associated with the Composition of Lactobacillus: Microbiome Analysis of Prostatic Tissue.	Kim JH, Seo H, Kim S, Ul-Haq A, Rahim MA, Jo S, Song HY, Song YS.	Int J Mol Sci	10.3390/ijms241310423	2023
	The Encapsulation Strategies for Targeted Delivery of Probiotics in Preventing and Treating Colorectal Cancer: A Review.	Zhong H, Jiang J, Hussain M, Zhang H, Chen L, Guan R.	Adv Sci (Weinh)	10.1002/advs.202500304	2025
Pathogenicity	Dynamic response of the intestinal microbiome to Eimeria maxima-induced coccidiosis in chickens.	Liu J, Guo J, Whitmore MA, Tobin I, Kim DM, Zhao Z, Zhang G.	Microbiol Spectr	10.1128/spectrum.00823-24	2024
	Eubacterium limosum modulates tumor microenvironments and produces antitumor metabolites active against colorectal cancer.	Lu Y, Lan R, Fan Q, Tang H, Hu D, Zhang S, Lin X, Wang R, Zhao R, Sun H, Liu L, Xu J.	ISME J	10.1093/ismejo/wraf130	2025
	Intratumoral microbiota in colorectal cancer: focus on specific distribution and potential mechanisms.	Long J, Wang J, Xiao C, You F, Jiang Y, Li X.	Cell Commun Signal	10.1186/s12964-024-01831-3	2024
Metabolism	Tryptophan Metabolite Indole-3-Aldehyde Induces AhR and c-MYC Degradation to Promote Tumor Immunogenicity.	Cui L, Wang Z, Guo Z, Zhang H, Liu Y, Zhang H, Jin H, Xu F, Wang X, Xie C, Guo H, Wang T, Lin Y, Zhao Q, Zhou P, Tan J, Bei JX, Huang P, Liu J, Xia X.	Adv Sci (Weinh)	10.1002/advs.202409533	2025
Metabolism	Lactobacillus gasseri requires peptides, not proteins or free amino acids, for growth in milk.	Arakawa K, Matsunaga K, Takihiro S, Moritoki A, Ryuto S, Kawai Y, Masuda T, Miyamoto T.	J Dairy Sci	10.3168/jds.2014-8860	2015
	Culturing the Chicken Intestinal Microbiota and Potential Application as Probiotics Development.	Ma K, Chen W, Lin XQ, Liu ZZ, Wang T, Zhang JB, Zhang JG, Zhou CK, Gao Y, Du CT, Yang YJ.	Int J Mol Sci	10.3390/ijms24033045	2023
	Gut bacteria are essential for development of an invasive bark beetle by regulating glucose transport.	Liu F, Ye F, Yang Y, Kang Z, Liu Y, Chen W, Wang S, Kou H, Kang L, Sun J.	Proc Natl Acad Sci U S A	10.1073/pnas.2410889121	2024
	Carbohydrate-active enzyme profiles of Lactiplantibacillus plantarum strain 84-3 contribute to flavor formation in fermented dairy and vegetable products.	Liang T, Jiang T, Liang Z, Zhang N, Dong B, Wu Q, Gu B.	Food Chem X	10.1016/j.fochx.2023.101036	2023
	The microbiome types of colorectal tissue are potentially associated with the prognosis of patients with colorectal cancer.	Xu Y, Zhao J, Ma Y, Liu J, Cui Y, Yuan Y, Xiang C, Ma D, Liu H.	Front Microbiol	10.3389/fmicb.2023.1100873	2023
	Relative phytase efficacy values as affected by response traits, including ileal microbiota composition.	Kunzel S, Borda-Molina D, Zuber T, Hartung J, Siegert W, Feuerstein D, Camarinha-Silva A, Rodehutscord M.	Poult Sci	10.1016/j.psj.2021.101133	2021
Genetics	Impact of commercial gut health interventions on caecal metagenome and broiler performance.	Pangga GM, Star-Shirko B, Psifidi A, Xia D, Corcionivoschi N, Kelly C, Hughes C, Lavery U, Richmond A, Ijaz UZ, Gundogdu O.	Microbiome	10.1186/s40168-024-02012-7	2025
	Diversity of the Microbiota of Traditional Izmir Tulum and Izmir Brined Tulum Cheeses and Selection of Potential Probiotics.	Guley Z, Fallico V, Cabrera-Rubio R, O'Sullivan D, Marotta M, Pennone V, Smith S, Beresford T.	Foods	10.3390/foods12183482	2023
	Efficient Mining of Anticancer Peptides from Gut Metagenome.	Ma Y, Liu X, Zhang X, Yu Y, Li Y, Song M, Wang J.	Adv Sci (Weinh)	10.1002/advs.202300107	2023
	Lactobacillus acidophilus suppresses non-alcoholic fatty liver disease-associated hepatocellular carcinoma through producing valeric acid.	Lau HC, Zhang X, Ji F, Lin Y, Liang W, Li Q, Chen D, Fong W, Kang X, Liu W, Chu ES, Ng QW, Yu J.	EBioMedicine	10.1016/j.ebiom.2023.104952	2024
	Blautia coccoides and its metabolic products enhance the efficacy of bladder cancer immunotherapy by promoting CD8⁺ T cell infiltration.	Wang B, Shangguan W, Li W, Xie M, Yu Y, Yang Q, Sun Q, Xue J, Zhu Z, Zhu Y, Wu P.	J Transl Med	10.1186/s12967-024-05762-y	2024
	Succession, Replacement, and Modification of Chicken Litter Microbiota.	Kubasova T, Faldynova M, Crhanova M, Karasova D, Zeman M, Babak V, Rychlik I.	Appl Environ Microbiol	10.1128/aem.01809-22	2022
	Evaluation of Dietary Supplements Containing Viable Bacteria by Cultivation/MALDI-TOF Mass Spectrometry and PCR Identification.	Mohar Lorbeg P, Golob M, Kramer M, Treven P, Bogovic Matijasic B.	Front Microbiol	10.3389/fmicb.2021.700138	2021
Enzymology	Functional properties of Lactobacillus strains isolated from dairy products.	Bujnakova D, Kmet V.	Folia Microbiol (Praha)	10.1007/s12223-012-0121-x	2012
	Recent Progress of Oral Functional Nanomaterials for Intestinal Microbiota Regulation.	Li W, Zhan M, Wen Y, Chen Y, Zhang Z, Wang S, Tian D, Tian S.	Pharmaceutics	10.3390/pharmaceutics16070921	2024
	Dual Inhibition of Salmonella enterica and Clostridium perfringens by New Probiotic Candidates Isolated from Chicken Intestinal Mucosa.	Lone A, Mottawea W, Ait Chait Y, Hammami R.	Microorganisms	10.3390/microorganisms9010166	2021
Enzymology	Contrasting diversity of vaginal lactobacilli among the females of Northeast India.	Das Purkayastha S, Bhattacharya MK, Prasad HK, Upadhyaya H, Lala SD, Pal K, Das M, Sharma GD, Bhattacharjee MJ.	BMC Microbiol	10.1186/s12866-019-1568-6	2019
	Potential role of intratumor bacteria outside the gastrointestinal tract: More than passengers.	Liu Z, Hong LL, Ling ZQ.	Cancer Med	10.1002/cam4.6298	2023
	Lactiplantibacillus plantarum, lactiplantibacillus pentosus and inulin meal inclusion boost the metagenomic function of broiler chickens.	Ferrocino I, Biasato I, Dabbou S, Colombino E, Rantsiou K, Squara S, Gariglio M, Capucchio MT, Gasco L, Cordero CE, Liberto E, Schiavone A, Cocolin L.	Anim Microbiome	10.1186/s42523-023-00257-5	2023
Pathogenicity	Dietary oxidized beef protein alters gut microbiota and induces colonic inflammatory damage in C57BL/6 mice.	Yin Y, Cai J, Zhou L, Xing L, Zhang W.	Front Nutr	10.3389/fnut.2022.980204	2022
	From microbes to medicine: harnessing the power of the microbiome in esophageal cancer.	Liu X, Li B, Liang L, Han J, Mai S, Liu L.	Front Immunol	10.3389/fimmu.2024.1450927	2024
	Combined effects of sodium butyrate and xylo-oligosaccharide on growth performance, anti-inflammatory and antioxidant capacity, intestinal morphology and microbiota of broilers at early stage.	Deng F, Tang S, Zhao H, Zhong R, Liu L, Meng Q, Zhang H, Chen L.	Poult Sci	10.1016/j.psj.2023.102585	2023
	Biodiversity of lactic acid bacteria and yeasts in spontaneously-fermented buckwheat and teff sourdoughs.	Moroni AV, Arendt EK, Dal Bello F.	Food Microbiol	10.1016/j.fm.2010.10.016	2011
Genetics	Assembly of hundreds of novel bacterial genomes from the chicken caecum.	Glendinning L, Stewart RD, Pallen MJ, Watson KA, Watson M.	Genome Biol	10.1186/s13059-020-1947-1	2020
	Microbiological Quality and Resistance to an Artificial Gut Environment of Two Probiotic Formulations.	Mazzantini D, Celandroni F, Calvigioni M, Panattoni A, Labella R, Ghelardi E.	Foods	10.3390/foods10112781	2021
Phylogeny	Microbiota dysbiosis is associated with HPV-induced cervical carcinogenesis.	Kwasniewski W, Wolun-Cholewa M, Kotarski J, Warchol W, Kuzma D, Kwasniewska A, Gozdzicka-Jozefiak A.	Oncol Lett	10.3892/ol.2018.9509	2018
	Gut-derived metabolite 3-methylxanthine enhances cisplatin-induced apoptosis via dopamine receptor D1 in a mouse model of ovarian cancer.	Mai Z, Han Y, Liang D, Mai F, Zheng H, Li P, Li Y, Ma C, Chen Y, Li W, Zhang S, Feng Y, Chen X, Wang Y.	mSystems	10.1128/msystems.01301-23	2024
Phylogeny	Assessing the Impact of Flavophospholipol and Virginiamycin Supplementation on the Broiler Microbiota: a Prospective Controlled Intervention Study.	Mysara M, Berkell M, Xavier BB, De Backer S, Lammens C, Hautekiet V, Petkov S, Goossens H, Kumar-Singh S, Malhotra-Kumar S.	mSystems	10.1128/msystems.00381-21	2021
	Gut Microbial Composition and Predicted Functions Are Not Associated with Feather Pecking and Antagonistic Behavior in Laying Hens.	Borda-Molina D, Iffland H, Schmid M, Muller R, Schad S, Seifert J, Tetens J, Bessei W, Bennewitz J, Camarinha-Silva A.	Life (Basel)	10.3390/life11030235	2021
Phylogeny	Diversity of lactic acid bacteria in two Flemish artisan raw milk Gouda-type cheeses.	Van Hoorde K, Verstraete T, Vandamme P, Huys G, Huys G.	Food Microbiol	10.1016/j.fm.2008.06.006	2008
	Black rice diet alleviates colorectal cancer development through modulating tryptophan metabolism and activating AHR pathway.	Wang L, Tu YX, Chen L, Yu KC, Wang HK, Yang SQ, Zhang Y, Zhang SJ, Song S, Xu HL, Yin ZC, Feng MQ, Yue JQ, Huang XH, Tang T, Wei SZ, Liang XJ, Chen ZX.	Imeta	10.1002/imt2.165	2024
Genetics	Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways.	Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD.	iScience	10.1016/j.isci.2023.108004	2023
	Determination of Antiviral Mechanism of Centenarian Gut-Derived Limosilactobacillus fermentum Against Norovirus.	Li Y, Gao J, Xue L, Shang Y, Cai W, Xie X, Jiang T, Chen H, Zhang J, Wang J, Chen M, Ding Y, Wu Q.	Front Nutr	10.3389/fnut.2022.812623	2022
Enzymology	Diversity of endocervical microbiota associated with genital Chlamydia trachomatis infection and infertility among women visiting obstetrics and gynecology clinics in Malaysia.	Cheong HC, Yap PSX, Chong CW, Cheok YY, Lee CYQ, Tan GMY, Sulaiman S, Hassan J, Sabet NS, Looi CY, Gupta R, Arulanandam B, AbuBakar S, Teh CSJ, Chang LY, Wong WF.	PLoS One	10.1371/journal.pone.0224658	2019
	Starter culture growth dynamics and sensory properties of fermented oat drink.	Kutt ML, Orgusaar K, Stulova I, Priidik R, Pismennoi D, Vaikma H, Kallastu A, Zhogoleva A, Morell I, Krisciunaite T.	Heliyon	10.1016/j.heliyon.2023.e15627	2023
	Probiotics intervention in colorectal cancer: From traditional approaches to novel strategies.	Ha S, Zhang X, Yu J.	Chin Med J (Engl)	10.1097/cm9.0000000000002955	2024
	Quxie Capsule Alleviates Colitis-associated Colorectal Cancer Through Modulating the Gut Microbiota and Suppressing A. fumigatus-induced Aerobic Glycolysis.	Zhang Z, Chen Y, Zheng Y, Wang L, Shen S, Yang G, Yang Y, Wang T.	Integr Cancer Ther	10.1177/15347354221138534	2022
Pathogenicity	Cloacal Lactobacillus isolates from broilers show high prevalence of resistance towards macrolide and lincosamide antibiotics.	Cauwerts K, Pasmans F, Devriese LA, Martel A, Haesebrouck F, Decostere A.	Avian Pathol	10.1080/03079450600598137	2006
	Dietary supplementation of solubles from shredded, steam-exploded pine particles modifies gut length and cecum microbiota in cyclic heat-stressed broilers.	Goel A, Ncho CM, Jeong CM, Gupta V, Jung JY, Ha SY, Yang JK, Choi YH.	Poult Sci	10.1016/j.psj.2023.102498	2023
	Protective Effects of Novel Lactobacillaceae Strains Isolated from Chicken Caeca against Necrotic Enteritis Infection: In Vitro and In Vivo Evidences.	Vieco-Saiz N, Belguesmia Y, Raspoet R, Auclair E, Padgett C, Bailey C, Gancel F, Drider D.	Microorganisms	10.3390/microorganisms10010152	2022
Metabolism	A muramidase from Acremonium alcalophilum hydrolyse peptidoglycan found in the gastrointestinal tract of broiler chickens.	Frederiksen CO, Cohn MT, Skov LK, Schmidt EGW, Schnorr KM, Buskov S, Leppanen M, Maasilta I, Perez-Calvo E, Lopez-Ulibarri R, Klausen M.	J Ind Microbiol Biotechnol	10.1093/jimb/kuab008	2021
Phylogeny	Metagenomic Analysis of Antibiotic-Induced Changes in Gut Microbiota in a Pregnant Rat Model.	Khan I, Azhar EI, Abbas AT, Kumosani T, Barbour EK, Raoult D, Yasir M.	Front Pharmacol	10.3389/fphar.2016.00104	2016
Cultivation	Bifidobacterium-selective isolation and enumeration from chicken caeca by a modified oligosaccharide antibiotic-selective agar medium.	Thitaram SN, Siragusa GR, Hinton A.	Lett Appl Microbiol	10.1111/j.1472-765x.2005.01765.x	2005
Phylogeny	Lactobacillus suntoryeus Cachat and Priest 2005 is a later synonym of Lactobacillus helveticus (Orla-Jensen 1919) Bergey et al. 1925 (Approved Lists 1980).	Naser SM, Hagen KE, Vancanneyt M, Cleenwerck I, Swings J, Tompkins TA.	Int J Syst Evol Microbiol	10.1099/ijs.0.64001-0	2006
	Potential Ability of Probiotics in the Prevention and Treatment of Colorectal Cancer.	Zhao J, Liao Y, Wei C, Ma Y, Wang F, Chen Y, Zhao B, Ji H, Wang D, Tang D.	Clin Med Insights Oncol	10.1177/11795549231188225	2023
Phylogeny	Naturally occurring lactic Acid bacteria isolated from tomato pomace silage.	Wu JJ, Du RP, Gao M, Sui YQ, Xiu L, Wang X.	Asian-Australas J Anim Sci	10.5713/ajas.2013.13670	2014
	Effects of microbiota on anticancer drugs: Current knowledge and potential applications.	Huang J, Liu W, Kang W, He Y, Yang R, Mou X, Zhao W.	EBioMedicine	10.1016/j.ebiom.2022.104197	2022
Genetics	A Comprehensive Genome Survey Provides Novel Insights into Bile Salt Hydrolase (BSH) in Lactobacillaceae.	Liang L, Yi Y, Lv Y, Qian J, Lei X, Zhang G.	Molecules	10.3390/molecules23051157	2018
	S-layer associated proteins contribute to the adhesive and immunomodulatory properties of Lactobacillus acidophilus NCFM.	Klotz C, Goh YJ, O'Flaherty S, Barrangou R.	BMC Microbiol	10.1186/s12866-020-01908-2	2020
	Estimation of 16S rRNA gene copy number in several probiotic Lactobacillus strains isolated from the gastrointestinal tract of chicken.	Lee CM, Sieo CC, Abdullah N, Ho YW.	FEMS Microbiol Lett	10.1111/j.1574-6968.2008.01305.x	2008
Phylogeny	groEL Gene-Based Phylogenetic Analysis of Lactobacillus Species by High-Throughput Sequencing.	Xie M, Pan M, Jiang Y, Liu X, Lu W, Zhao J, Zhang H, Chen W.	Genes (Basel)	10.3390/genes10070530	2019
Metabolism	Evaluation of phytate-degrading Lactobacillus culture administration to broiler chickens.	Askelson TE, Campasino A, Lee JT, Duong T.	Appl Environ Microbiol	10.1128/aem.03155-13	2014
	Use of the DNA sequence of variable regions of the 16S rRNA gene for rapid and accurate identification of bacteria in the Lactobacillus acidophilus complex.	Kullen MJ, Sanozky-Dawes RB, Crowell DC, Klaenhammer TR.	J Appl Microbiol	10.1046/j.1365-2672.2000.01146.x	2000
Phylogeny	Host factors are associated with vaginal microbiome structure in pregnancy in the ECHO Cohort Consortium.	McKee K, Bassis CM, Golob J, Palazzolo B, Sen A, Comstock SS, Rosas-Salazar C, Stanford JB, O'Connor T, Gern JE, Paneth N, Dunlop AL, ECHO Cohort Consortium.	Sci Rep	10.1038/s41598-024-62537-7	2024
Phylogeny	Evaluation of random amplified polymorphic DNA (RAPD)-PCR as a method to differentiate Lactobacillus acidophilus, Lactobacillus crispatus, Lactobacillus amylovorus, Lactobacillus gallinarum, Lactobacillus gasseri, and Lactobacillus johnsonii.	Du Plessis EM, Dicks LM.	Curr Microbiol	10.1007/bf00294286	1995
	Targeting Gut Microbiota With Natural Polysaccharides: Effective Interventions Against High-Fat Diet-Induced Metabolic Diseases.	Sun CY, Zheng ZL, Chen CW, Lu BW, Liu D.	Front Microbiol	10.3389/fmicb.2022.859206	2022
	Preventive antimicrobial action and tissue architecture ameliorations of Bacillus subtilis in challenged broilers.	Soliman ES, Hamad RT, Abdallah MS.	Vet World	10.14202/vetworld.2021.523-536	2021
Metabolism	Orally administered heat-killed Lactobacillus paracasei MCC1849 enhances antigen-specific IgA secretion and induces follicular helper T cells in mice.	Arai S, Iwabuchi N, Takahashi S, Xiao JZ, Abe F, Hachimura S.	PLoS One	10.1371/journal.pone.0199018	2018
Metabolism	Probiotics protect against RSV infection by modulating the microbiota-alveolar-macrophage axis.	Ji JJ, Sun QM, Nie DY, Wang Q, Zhang H, Qin FF, Wang QS, Lu SF, Pang GM, Lu ZG.	Acta Pharmacol Sin	10.1038/s41401-020-00573-5	2021
Genetics	Accurate and Strict Identification of Probiotic Species Based on Coverage of Whole-Metagenome Shotgun Sequencing Data.	Seol D, Jhang SY, Kim H, Kim SY, Kwak HS, Kim SH, Lee W, Park S, Kim H, Cho S, Kwak W.	Front Microbiol	10.3389/fmicb.2019.01683	2019
	Beyond the Gut: The intratumoral microbiome's influence on tumorigenesis and treatment response.	Zhang H, Fu L, Leiliang X, Qu C, Wu W, Wen R, Huang N, He Q, Cheng Q, Liu G, Cheng Y.	Cancer Commun (Lond)	10.1002/cac2.12597	2024
Genetics	Plasmids encode niche-specific traits in Lactobacillaceae.	Davray D, Deo D, Kulkarni R.	Microb Genom	10.1099/mgen.0.000472	2021
Enzymology	Effects of protease and phytase supplements on small intestinal microbiota and amino acid digestibility in broiler chickens.	Borda-Molina D, Zuber T, Siegert W, Camarinha-Silva A, Feuerstein D, Rodehutscord M.	Poult Sci	10.3382/ps/pez038	2019
	Development of an Antigen Delivery Platform Using Lactobacillus acidophilus Decorated With Heterologous Proteins: A Sheep in Wolf's Clothing Story.	Uriza PJ, Trautman C, Palomino MM, Fina Martin J, Ruzal SM, Roset MS, Briones G.	Front Microbiol	10.3389/fmicb.2020.509380	2020
Metabolism	First evidence of production of the lantibiotic nisin P.	Garcia-Gutierrez E, O'Connor PM, Saalbach G, Walsh CJ, Hegarty JW, Guinane CM, Mayer MJ, Narbad A, Cotter PD.	Sci Rep	10.1038/s41598-020-60623-0	2020
Enzymology	Characterizing the activity of abundant, diverse and active CRISPR-Cas systems in lactobacilli.	Crawley AB, Henriksen ED, Stout E, Brandt K, Barrangou R.	Sci Rep	10.1038/s41598-018-29746-3	2018
Phylogeny	Multi-cohort analysis of colorectal cancer metagenome identified altered bacteria across populations and universal bacterial markers.	Dai Z, Coker OO, Nakatsu G, Wu WKK, Zhao L, Chen Z, Chan FKL, Kristiansen K, Sung JJY, Wong SH, Yu J.	Microbiome	10.1186/s40168-018-0451-2	2018
Genetics	A Genome-Based Species Taxonomy of the Lactobacillus Genus Complex.	Wittouck S, Wuyts S, Meehan CJ, van Noort V, Lebeer S.	mSystems	10.1128/msystems.00264-19	2019
Enzymology	Complex ecological interactions of Staphylococcus aureus in tampons during menstruation.	Jacquemond I, Muggeo A, Lamblin G, Tristan A, Gillet Y, Bolze PA, Bes M, Gustave CA, Rasigade JP, Golfier F, Ferry T, Dubost A, Abrouk D, Barreto S, Prigent-Combaret C, Thioulouse J, Lina G, Muller D.	Sci Rep	10.1038/s41598-018-28116-3	2018
	An Overview of the Elusive Passenger in the Gastrointestinal Tract of Cattle: The Shiga Toxin Producing Escherichia coli.	Sapountzis P, Segura A, Desvaux M, Forano E.	Microorganisms	10.3390/microorganisms8060877	2020
	The S-layer Associated Serine Protease Homolog PrtX Impacts Cell Surface-Mediated Microbe-Host Interactions of Lactobacillus acidophilus NCFM.	Johnson BR, O'Flaherty S, Goh YJ, Carroll I, Barrangou R, Klaenhammer TR.	Front Microbiol	10.3389/fmicb.2017.01185	2017
Biotechnology	Presence of pathogenic Escherichia coli is correlated with bacterial community diversity and composition on pre-harvest cattle hides.	Chopyk J, Moore RM, DiSpirito Z, Stromberg ZR, Lewis GL, Renter DG, Cernicchiaro N, Moxley RA, Wommack KE.	Microbiome	10.1186/s40168-016-0155-4	2016
	Epitopes identified in GAPDH from Clostridium difficile recognized as common antigens with potential autoimmunizing properties.	Razim A, Pacyga K, Aptekorz M, Martirosian G, Szuba A, Pawlak-Adamska E, Brzychczy-Wloch M, Myc A, Gamian A, Gorska S.	Sci Rep	10.1038/s41598-018-32193-9	2018
Phylogeny	Comparison and utilization of repetitive-element PCR techniques for typing Lactobacillus isolates from the chicken gastrointestinal tract.	Stephenson DP, Moore RJ, Allison GE.	Appl Environ Microbiol	10.1128/aem.01150-09	2009
	Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 8: suitability of taxonomic units notified to EFSA until March 2018.	EFSA Panel on Biological Hazards (BIOHAZ), Ricci A, Allende A, Bolton D, Chemaly M, Davies R, Fernandez Escamez PS, Girones R, Koutsoumanis K, Lindqvist R, Norrung B, Robertson L, Ru G, Sanaa M, Simmons M, Skandamis P, Snary E, Speybroeck N, Ter Kuile B, Threlfall J, Wahlstrom H, Cocconcelli PS, Peixe L, Maradona MP, Querol A, Suarez JE, Sundh I, Vlak J, Barizzone F, Correia S, Herman L.	EFSA J	10.2903/j.efsa.2018.5315	2018
	Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 9: suitability of taxonomic units notified to EFSA until September 2018.	EFSA Panel on Biological Hazards (BIOHAZ), Koutsoumanis K, Allende A, Alvarez-Ordonez A, Bolton D, Bover-Cid S, Chemaly M, Davies R, Hilbert F, Lindqvist R, Nauta M, Peixe L, Ru G, Simmons M, Skandamis P, Suffredini E, Cocconcelli PS, Fernandez Escamez PS, Maradona MP, Querol A, Suarez JE, Sundh I, Vlak J, Barizzone F, Correia S, Herman L.	EFSA J	10.2903/j.efsa.2019.5555	2019
	Development of Bacterial Therapeutics against the Bovine Respiratory Pathogen Mannheimia haemolytica.	Amat S, Timsit E, Baines D, Yanke J, Alexander TW.	Appl Environ Microbiol	10.1128/aem.01359-19	2019
Pathogenicity	Effects of Ligustrum robustum on gut microbes and obesity in rats.	Xie ZM, Zhou T, Liao HY, Ye Q, Liu S, Qi L, Huang J, Zuo HJ, Pei XF.	World J Gastroenterol	10.3748/wjg.v21.i46.13042	2015
	Safety assessment of antibiotic and probiotic feed additives for Gallus gallus domesticus.	Neveling DP, van Emmenes L, Ahire JJ, Pieterse E, Smith C, Dicks LMT.	Sci Rep	10.1038/s41598-017-12866-7	2017
	Comparative Analysis of two Component Signal Transduction Systems of the Lactobacillus Acidophilus Group.	Cui Y, Qu X.	Braz J Microbiol	10.1590/s1517-83822011000100019	2011
Metabolism	Sortase-deficient lactobacilli: effect on immunomodulation and gut retention.	Call EK, Goh YJ, Selle K, Klaenhammer TR, O'Flaherty S.	Microbiology (Reading)	10.1099/mic.0.000007	2015
	Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 7: suitability of taxonomic units notified to EFSA until September 2017.	EFSA Panel on Biological Hazards (BIOHAZ), Ricci A, Allende A, Bolton D, Chemaly M, Davies R, Girones R, Koutsoumanis K, Lindqvist R, Norrung B, Robertson L, Ru G, Fernandez Escamez PS, Sanaa M, Simmons M, Skandamis P, Snary E, Speybroeck N, Ter Kuile B, Threlfall J, Wahlstrom H, Cocconcelli PS, Peixe L, Maradona MP, Querol A, Suarez JE, Sundh I, Vlak J, Barizzone F, Correia S, Herman L.	EFSA J	10.2903/j.efsa.2018.5131	2018
Enzymology	Characterization and in vitro properties of oral lactobacilli in breastfed infants.	Vestman NR, Timby N, Holgerson PL, Kressirer CA, Claesson R, Domellof M, Ohman C, Tanner AC, Hernell O, Johansson I.	BMC Microbiol	10.1186/1471-2180-13-193	2013
Biotechnology	Lactic acid bacterium and yeast microbiotas of 19 sourdoughs used for traditional/typical italian breads: interactions between ingredients and microbial species diversity.	Minervini F, Di Cagno R, Lattanzi A, De Angelis M, Antonielli L, Cardinali G, Cappelle S, Gobbetti M.	Appl Environ Microbiol	10.1128/aem.07721-11	2012
Metabolism	Resource partitioning in relation to cohabitation of Lactobacillus species in the mouse forestomach.	Tannock GW, Wilson CM, Loach D, Cook GM, Eason J, O'Toole PW, Holtrop G, Lawley B.	ISME J	10.1038/ismej.2011.161	2012
Phylogeny	Identification of the bacterial microflora in dairy products by temporal temperature gradient gel electrophoresis.	Ogier JC, Son O, Gruss A, Tailliez P, Delacroix-Buchet A.	Appl Environ Microbiol	10.1128/aem.68.8.3691-3701.2002	2002
	Microbes on the human vaginal epithelium.	Hyman RW, Fukushima M, Diamond L, Kumm J, Giudice LC, Davis RW.	Proc Natl Acad Sci U S A	10.1073/pnas.0503236102	2005
	Identification of extracellular surface-layer associated proteins in Lactobacillus acidophilus NCFM.	Johnson B, Selle K, O'Flaherty S, Goh YJ, Klaenhammer T.	Microbiology (Reading)	10.1099/mic.0.070755-0	2013
Phylogeny	Characterization of a novel Lactobacillus species closely related to Lactobacillus johnsonii using a combination of molecular and comparative genomics methods.	Sarmiento-Rubiano LA, Berger B, Moine D, Zuniga M, Perez-Martinez G, Yebra MJ.	BMC Genomics	10.1186/1471-2164-11-504	2010
Phylogeny	Bifidobacterium lactis DSM 10140: identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny.	Ventura M, Canchaya C, van Sinderen D, Fitzgerald GF, Zink R.	Appl Environ Microbiol	10.1128/aem.70.5.3110-3121.2004	2004
Pathogenicity	Influence of antimicrobial feed additives on broiler commensal posthatch gut microbiota development and performance.	Torok VA, Allison GE, Percy NJ, Ophel-Keller K, Hughes RJ.	Appl Environ Microbiol	10.1128/aem.02300-10	2011
	Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 10: Suitability of taxonomic units notified to EFSA until March 2019.	EFSA Panel on Biological Hazards (BIOHAZ), Koutsoumanis K, Allende A, Alvarez-Ordonez A, Bolton D, Bover-Cid S, Chemaly M, Davies R, De Cesare A, Hilbert F, Lindqvist R, Nauta M, Peixe L, Ru G, Simmons M, Skandamis P, Suffredini E, Cocconcelli PS, Fernandez Escamez PS, Maradona MP, Querol A, Suarez JE, Sundh I, Vlak J, Barizzone F, Correia S, Herman L.	EFSA J	10.2903/j.efsa.2019.5753	2019
	Scientific Opinion on the update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA.	EFSA Panel on Biological Hazards (BIOHAZ), Ricci A, Allende A, Bolton D, Chemaly M, Davies R, Girones R, Herman L, Koutsoumanis K, Lindqvist R, Norrung B, Robertson L, Ru G, Sanaa M, Simmons M, Skandamis P, Snary E, Speybroeck N, Ter Kuile B, Threlfall J, Wahlstrom H, Cocconcelli PS, Klein G, Prieto Maradona M, Querol A, Peixe L, Suarez JE, Sundh I, Vlak JM, Aguilera-Gomez M, Barizzone F, Brozzi R, Correia S, Heng L, Istace F, Lythgo C, Fernandez Escamez PS.	EFSA J	10.2903/j.efsa.2017.4664	2017
Metabolism	Targeted gene inactivation in Lactobacillus gallinarum ATCC 33199 using chromosomal integration.	Askelson TE, McMullin AB, Duong T	Poult Sci	10.3382/ps/pey363	2019
Phylogeny	Ellagibacter isourolithinifaciens gen. nov., sp. nov., a new member of the family Eggerthellaceae, isolated from human gut.	Beltran D, Romo-Vaquero M, Espin JC, Tomas-Barberan FA, Selma MV.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002735	2018
Phylogeny	Lactobacillus suntoryeus sp. nov., isolated from malt whisky distilleries.	Cachat E, Priest FG.	Int J Syst Evol Microbiol	10.1099/ijs.0.63266-0	2005
Phylogeny	Lactobacillus kitasatonis sp. nov., from chicken intestine.	Mukai T, Arihara K, Ikeda A, Nomura K, Suzuki F, Ohori H.	Int J Syst Evol Microbiol	10.1099/ijs.0.02815-0	2003
Phylogeny	Characterisation of the microbiota of rice sourdoughs and description of Lactobacillus spicheri sp. nov.	Meroth CB, Hammes WP, Hertel C.	Syst Appl Microbiol	10.1078/072320204322881763	2004
Phylogeny	Lactobacillus fornicalis sp. nov., isolated from the posterior fornix of the human vagina.	Dicks LM, Silvester M, Lawson PA, Collins MD.	Int J Syst Evol Microbiol	10.1099/00207713-50-3-1253	2000
Phylogeny	Taxonomic study of the Lactobacillus acidophilus group, with recognition of Lactobacillus gallinarum sp. nov. and Lactobacillus johnsonii sp. nov. and synonymy of Lactobacillus acidophilus group A3 (Johnson et al. 1980) with the type strain of Lactobacillus amylovorus (Nakamura 1981).	Fujisawa T, Benno Y, Yaeshima T, Mitsuoka T	Int J Syst Bacteriol	10.1099/00207713-42-3-487	1992

References

#3967	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10532
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38134	; Curators of the CIP;
#50245	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30724
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119516	Collection of Institut Pasteur ; Curators of the CIP; CIP 103611
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lactobacillus gallinarum (CCUG 30724, JCM 2011, CCM 4383)

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