[Ref.: #3967] |
Sample type/isolated from |
chicken crop |
[Ref.: #3967] |
Country |
USA |
[Ref.: #3967] |
Country ISO 3 Code |
USA |
[Ref.: #3967] |
Continent |
North America |
|
[Ref.: #50245] |
Sample type/isolated from |
Chicken crop |
|
[Ref.: #67770] |
Sample type/isolated from |
Chicken crop |
|
[Ref.: #119516] |
Sample type/isolated from |
Animal, Normal chicken crop |
[Ref.: #119516] |
Geographic location (country and/or sea, region) |
Blacksburg, Virginia |
[Ref.: #119516] |
Country |
United States of America |
[Ref.: #119516] |
Country ISO 3 Code |
USA |
[Ref.: #119516] |
Continent |
North America |
[Ref.: #119516] |
Isolation date |
1964 |
* marker position based on {}
|
|
Isolation sources categories |
#Engineered |
#Agriculture |
- |
#Host |
#Birds |
#Chicken |
|
|
-
Information on genomic background e.g. entries in nucleic sequence databass Sequence information
|
16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
|
|
Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #67770] |
Lactobacillus gallinarum gene for 16S ribosomal RNA, partial sequence, strain: JCM 2011 |
LC071810 |
1460 |
|
52242 tax ID |
[Ref.: #20218] |
Lactobacillus gallinarum 16S rRNA gene, strain ATCC 3319 |
AJ242968 |
1533 |
|
52242 tax ID |
* |
[Ref.: #20218] |
Lactobacillus gallinarum partial 16S rRNA gene and internal transcribed spacer 1 (ITS1), strain ATCC 33199 |
AJ417737 |
1606 |
|
52242 tax ID |
* |
[Ref.: #20218] |
Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
EF412999 |
497 |
|
52242 tax ID |
* |
[Ref.: #20218] |
L.gallinarum 16S rRNA gene, partial |
X97898 |
626 |
|
52242 tax ID |
* |
[Ref.: #20218] |
L.crispatus 16S rRNA gene, partial |
X98052 |
652 |
|
47770 tax ID |
* |
[Ref.: #20218] |
Lactobacillus gallinarum partial 16S rRNA gene, type strain ATCC 33199T |
FR683086 |
1518 |
|
52242 tax ID |
* |
[Ref.: #20218] |
Lactobacillus gallinarum strain DSM 10532 16S ribosomal RNA gene, partial sequence |
EF468093 |
419 |
|
52242 tax ID |
* |
[Ref.: #20218] |
Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: YIT 0218 (= JCM 2011) |
AB008208 |
1532 |
|
52242 tax ID |
* |
[Ref.: #20218] |
Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: JCM 2011 |
AB289122 |
667 |
|
52242 tax ID |
* |
[Ref.: #20218] |
Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: JCM 2011 |
AB596947 |
1486 |
|
52242 tax ID |
* |
|
[Ref.: #3967] |
GC-content |
35.9 mol% |
thermal denaturation, midpoint method (Tm) |
[Ref.: #67770] |
GC-content |
36.5 mol% |
genome sequence analysis |
|
-
Availability in culture collections External links
[Ref.: #3967] |
Culture collection no. |
CCUG 30724, JCM 2011, CCM 4383, CIP 103611, DSM 10532, ATCC 33199, NCFB 2235, VPI 1294, BCRC 17266, KCTC 5048, LMG 9435, NCIMB 13223 |
[Ref.: #76037] |
SI-ID 3188
|
* |
|
Literature: |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Metabolism |
Targeted gene inactivation in Lactobacillus gallinarum ATCC 33199 using chromosomal integration. |
Askelson TE, McMullin AB, Duong T |
Poult Sci |
10.3382/ps/pey363 |
2019 |
* |
Phylogeny |
Taxonomic study of the Lactobacillus acidophilus group, with recognition of Lactobacillus gallinarum sp. nov. and Lactobacillus johnsonii sp. nov. and synonymy of Lactobacillus acidophilus group A3 (Johnson et al. 1980) with the type strain of Lactobacillus amylovorus (Nakamura 1981). |
Fujisawa T, Benno Y, Yaeshima T, Mitsuoka T |
Int J Syst Bacteriol |
10.1099/00207713-42-3-487 |
1992 |
* |
|
- References
-
#3967 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 10532
|
-
-
-
#38134 |
; Curators of the CIP;
|
-
#50245 |
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 30724
|
-
-
#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
|
-
#68371 |
Automatically annotated from API 50CH acid .
|
-
#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
|
-
-
#76037 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID3188.1 )
|
-
#119516 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 103611
|
- * These data were automatically processed and therefore are not curated
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