Name: Lactobacillus gallinarum 7 CCr87
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6565

Type strain:

Species: Lactobacillus gallinarum

Strain Designation: 7 CCr87

Culture col. no.: CCUG 30724, JCM 2011, CCM 4383, CIP 103611, DSM 10532, ATCC 33199, NCFB 2235, VPI 1294, BCRC 17266, KCTC 5048, LMG 9435, NCIMB 13223

Strain history: CIP <- 1992, F. Gasser, Inst. Pasteur, Paris, France, Lactobacillus acidophilus, group A4 <- J.L. Johnson, Blacksburg, USA: strain VPI 1294 <- W.E.C. Moore, Blacksburg, USA: strain 7 CCr87

NCBI tax ID(s): 1423748 (strain), 52242 (species)

SI-ID 3188

LMG 9435, ATCC 33199, CCM 4383, CIP 103611, DSM 10532, JCM 2011, NCFB 2235, CCUG 30724, NCIMB 13223, NCDO2235, BCRC 17266, CCRC 17266, KCTC 5048

Special Collections

Other strains from Lactobacillus gallinarum

Section

When using BacDive for research please cite our paper

Lactobacillus gallinarum 7 CCr87 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from chicken crop.

Gram-positive
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lactobacillus*
	Species	**Lactobacillus gallinarum**
	Full Scientific Name (LPSN)	Lactobacillus gallinarum Fujisawa et al. 1992

Information on morphological and physiological properties Morphology

[Ref.: #119516]	Gram stain	positive
[Ref.: #125438]	Gram stain	positive Confidence in %93.795

[Ref.: #119516]	Cell shape	rod-shaped

[Ref.: #125438]	Motility	no Confidence in %91.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3967]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #3967]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #3967]

Culture medium composition

expand / minimize

[Ref.: #38134]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #38134]

Culture medium growth

[Ref.: #38134]

Culture medium composition

expand / minimize

[Ref.: #119516]

Culture medium

CIP Medium 40

[Ref.: #119516]

Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #3967]		growth	37 °C
[Ref.: #38134]		growth	37 °C
[Ref.: #50245]		growth	37 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #119516]		growth	37-45 °C
[Ref.: #119516]	negative	growth	15 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #50245]	Oxygen tolerance	anaerobe
[Ref.: #119516]	Oxygen tolerance	facultative anaerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %94.5

[Ref.: #125438]

Ability of spore formation

no Confidence in %92.349

[Ref.: #3967]	Murein short key	A11.31
[Ref.: #3967]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #119516]	nitrate ChEBI	-	reduction
[Ref.: #119516]	nitrate ChEBI	+	respiration
[Ref.: #119516]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119516]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #119516]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #119516]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #119516]	catalase	-	1.11.1.6
[Ref.: #119516]	lysine decarboxylase	-	4.1.1.18
[Ref.: #119516]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119516]	oxidase	-

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #3967]	15080	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	-	+	-	+	+	+	+	+	-	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3967]	Sample type/isolated from	chicken crop
[Ref.: #3967]	Country	USA
[Ref.: #3967]	Country ISO 3 Code	USA
[Ref.: #3967]	Continent	North America

[Ref.: #50245]	Sample type/isolated from	Chicken crop

[Ref.: #67770]	Sample type/isolated from	Chicken crop

[Ref.: #119516]	Sample type/isolated from	Animal, Normal chicken crop
[Ref.: #119516]	Geographic location (country and/or sea, region)	Blacksburg, Virginia
[Ref.: #119516]	Country	United States of America
[Ref.: #119516]	Country ISO 3 Code	USA
[Ref.: #119516]	Continent	North America
[Ref.: #119516]	Isolation date	1964
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	-
#Host	#Birds	#Chicken

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC071810 (>99% sequence identity) for Lactobacillus from Microbeatlas

Aquatic Samples	2250
Soil Samples	2173
Animal Samples	42256
Plant Samples	765
Total Samples	47444

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3967]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119516]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus gallinarum gene for 16S ribosomal RNA, partial sequence, strain: JCM 2011	LC071810	1460	GenBank ENA	52242 tax ID
[Ref.: #20218]	Lactobacillus gallinarum 16S rRNA gene, strain ATCC 3319	AJ242968	1533	GenBank ENA	52242 tax ID	*
[Ref.: #20218]	Lactobacillus gallinarum partial 16S rRNA gene and internal transcribed spacer 1 (ITS1), strain ATCC 33199	AJ417737	1606	GenBank ENA	52242 tax ID	*
[Ref.: #20218]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EF412999	497	GenBank ENA	52242 tax ID	*
[Ref.: #20218]	L.gallinarum 16S rRNA gene, partial	X97898	626	GenBank ENA	52242 tax ID	*
[Ref.: #20218]	L.crispatus 16S rRNA gene, partial	X98052	652	GenBank ENA	47770 tax ID	*
[Ref.: #20218]	Lactobacillus gallinarum partial 16S rRNA gene, type strain ATCC 33199T	FR683086	1518	GenBank ENA	52242 tax ID	*
[Ref.: #20218]	Lactobacillus gallinarum strain DSM 10532 16S ribosomal RNA gene, partial sequence	EF468093	419	GenBank ENA	52242 tax ID	*
[Ref.: #20218]	Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: YIT 0218 (= JCM 2011)	AB008208	1532	GenBank ENA	52242 tax ID	*
[Ref.: #20218]	Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: JCM 2011	AB289122	667	GenBank ENA	52242 tax ID	*
[Ref.: #20218]	Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: JCM 2011	AB596947	1486	GenBank ENA	52242 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412975	1538	GenBank ENA	1598 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412976	1538	GenBank ENA	1598 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412977	1534	GenBank ENA	1598 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412978	1488	GenBank ENA	47493 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412979	1535	GenBank ENA	1580 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412980	1530	GenBank ENA	1580 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412981	1525	GenBank ENA	1580 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412982	1526	GenBank ENA	1580 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412983	1528	GenBank ENA	1580 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412984	1531	GenBank ENA	52242 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412985	1529	GenBank ENA	52242 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412986	1536	GenBank ENA	1624 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412987	545	GenBank ENA	1598 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412988	539	GenBank ENA	1598 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412989	539	GenBank ENA	1598 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412990	543	GenBank ENA	47493 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412991	550	GenBank ENA	1580 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412992	550	GenBank ENA	1580 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412993	550	GenBank ENA	1580 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412994	550	GenBank ENA	1580 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412995	550	GenBank ENA	1580 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412996	538	GenBank ENA	52242 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412997	537	GenBank ENA	52242 tax ID	*
[Ref.: #124043]	Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	EF412998	541	GenBank ENA	1624 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus gallinarum DSM 10532 = JCM 2011	GCA_001434975	scaffold	GenBank ENA	1423748 tax ID
[Ref.: #67770]	Lactobacillus gallinarum DSM 10532 = JCM 2011	GCA_000614735	contig	GenBank ENA	1423748 tax ID
[Ref.: #66792]	Lactobacillus gallinarum DSM 10532 = JCM 2011	1423748.3	wgs	PATRIC	1423748 tax ID	*
[Ref.: #66792]	Lactobacillus gallinarum JCM 2011	1236533.3	wgs	PATRIC	1423748 tax ID	*
[Ref.: #66792]	Lactobacillus gallinarum DSM 10532	2663762633	draft	JGI IMG/M	1423748 tax ID	*
[Ref.: #66792]	Lactobacillus gallinarum JCM 2011	2585427877	draft	JGI IMG/M	1423748 tax ID	*

[Ref.: #3967]	GC-content	35.9 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	36.5 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus gallinarum DSM 10532 = JCM 2011 PATRIC: 1423748.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	93.795	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	65.52	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	92.349	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	96	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	96.551	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	91.5	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lactobacillus gallinarum DSM 10532 = JCM 2011 NCBI: GCA_001434975
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	94.5
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	75.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	51.1
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	62.5

Availability in culture collections External links

[Ref.: #3967]

Culture collection no.

CCUG 30724, JCM 2011, CCM 4383, CIP 103611, DSM 10532, ATCC 33199, NCFB 2235, VPI 1294, BCRC 17266, KCTC 5048, LMG 9435, NCIMB 13223

[Ref.: #76037]

SI-ID 3188

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Targeted gene inactivation in Lactobacillus gallinarum ATCC 33199 using chromosomal integration.	Askelson TE, McMullin AB, Duong T	Poult Sci	10.3382/ps/pey363	2019	*
Phylogeny	Taxonomic study of the Lactobacillus acidophilus group, with recognition of Lactobacillus gallinarum sp. nov. and Lactobacillus johnsonii sp. nov. and synonymy of Lactobacillus acidophilus group A3 (Johnson et al. 1980) with the type strain of Lactobacillus amylovorus (Nakamura 1981).	Fujisawa T, Benno Y, Yaeshima T, Mitsuoka T	Int J Syst Bacteriol	10.1099/00207713-42-3-487	1992	*

References

#3967

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10532

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38134 ; Curators of the CIP;
#50245 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30724

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#76037

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3188.1 )

#119516 Collection of Institut Pasteur ; Curators of the CIP; CIP 103611

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Search for species Lactobacillus gallinarum in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Lactobacillus gallinarum DSM 10532 = JCM 2011

Lactobacillus gallinarum DSM 10532 = JCM 2011

Change proposal

Change proposal