Name: Lacticaseibacillus zeae DSM 20178
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6564

Type strain:

Species: Lacticaseibacillus zeae

Culture col. no.: DSM 20178, ATCC 15820, RIA 482, CCUG 35515, KCTC 3804, JCM 11302, BCRC 17942, LMG 17315, NCIMB 9537

Strain history: <- CCUG <- DSM <- ATCC <- RIA 482, `Lactobacterium zeae`

NCBI tax ID(s): 57037 (species)

Section

Lacticaseibacillus zeae DSM 20178 is a facultative anaerobe, mesophilic, rod-shaped bacterium that was isolated from corn steep liquor.

rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lacticaseibacillus*
	Species	**Lacticaseibacillus zeae**
	Full Scientific Name (PNU)	Lacticaseibacillus zeae (Dicks et al. 1996) Liu and Gu 2020

Synonym

Lactobacillus zeae

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive

[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8608]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #8608]

Culture medium growth

[Ref.: #8608]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #8608]

Culture medium composition

expand / minimize

[Ref.: #40580]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #40580]

Culture medium growth

[Ref.: #40580]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8608]	growth	37 °C
[Ref.: #40580]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #8608]	Temperature range	mesophilic
[Ref.: #40580]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

facultative anaerobe

[Ref.: #8608]	Murein short key	A11.31
[Ref.: #8608]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8608]	8199	-	-	-	-	-	+	-	-	-	-	+	+	+	+	-	+	-	-	+	-	-	-	+	+	+	+	+	+	-	-	-	+	+	-	+	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-
[Ref.: #8608]	8198	-	-	-	+	-	+	-	-	-	-	+	+	+	+	-	+	-	+/-	+	-	-	-	+	+	+	+	+	+	+	+	-	+	+	-	+	-	-	-	-	+	-	-	+	-	+	+	-	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8608]	Sample type/isolated from	corn steep liquor

[Ref.: #52785]	Sample type/isolated from	Corn steep liquor

[Ref.: #67771]	Sample type/isolated from	From corn steep ilquor
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Beverage
#Engineered	#Food production	#Fermented
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB008213 (>99% sequence identity) for Lactobacillaceae from Microbeatlas

Aquatic Samples	2397
Soil Samples	1801
Animal Samples	39363
Plant Samples	883
Total Samples	44444

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8608]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Lactobacillus zeae gene for 16S rRNA, partial sequence, strain: YIT 0278 (= ATCC 15820)	AB008213	1559	ENA	57037 tax ID	*
[Ref.: #20218]	Lactobacillus zeae ATCC 15820 16S ribosomal RNA gene, partial sequence	AF429522	507	ENA	57037 tax ID	*
[Ref.: #20218]	Lactobacillus zeae strain ATCC 15820 16S ribosomal RNA gene, partial sequence; 16S-23S intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF429609	538	ENA	57037 tax ID	*
[Ref.: #20218]	Lactobacillus zeae strain ATCC 15820 16S ribosomal RNA gene, partial sequence	AY196979	518	ENA	57037 tax ID	*
[Ref.: #20218]	Lactobacillus zeae gene for 16S ribosomal RNA, partial sequence	D86516	1522	ENA	57037 tax ID	*
[Ref.: #20218]	Lactobacillus zeae genes for 16S rRNA, 16S-23S internal transcribed spacer, tRNA-Ile, tRNA-Ala, 23S rRNA, partial and complete sequence, strain:JCM 11302	AB237514	577	ENA	57037 tax ID	*
[Ref.: #20218]	Lactobacillus zeae genes for 16S rRNA, 16S-23S internal transcribed spacer, 23S rRNA, partial sequence, strain:JCM 11302	AB237515	364	ENA	57037 tax ID	*
[Ref.: #20218]	Lactobacillus zeae gene for 16S rRNA, partial sequence, strain: JCM 11302	AB289313	643	ENA	57037 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lacticaseibacillus zeae DSM 20178 = KCTC 3804 DSM 20178	GCA_001433745	scaffold	GenBank	1423816 tax ID
[Ref.: #67771]	Lacticaseibacillus zeae DSM 20178 = KCTC 3804 KCTC 3804	GCA_000260435	contig	GenBank	1423816 tax ID
[Ref.: #66792]	Lactobacillus zeae DSM 20178 = KCTC 3804	1423816.3	wgs	PATRIC	1423816 tax ID	*
[Ref.: #66792]	Lactobacillus zeae KCTC 3804	1046597.4	wgs	PATRIC	1423816 tax ID	*
[Ref.: #66792]	Lactobacillus zeae KCTC 3804	2513237379	draft	JGI IMG/M	1423816 tax ID	*
[Ref.: #66792]	Lactobacillus zeae DSM 20178	2667528132	draft	JGI IMG/M	1423816 tax ID	*

[Ref.: #8608]	GC-content	48.0 mol%
[Ref.: #67770]	GC-content	48 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	48.0 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #8608]

Culture collection no.

DSM 20178, ATCC 15820, RIA 482, CCUG 35515, KCTC 3804, JCM 11302, BCRC 17942, LMG 17315, NCIMB 9537

[Ref.: #20218]

Associated Passport(s) in StrainInfo

35846, 35845, 709810

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genome-based reclassification of Lactobacillus casei: emended classification and description of the species Lactobacillus zeae.	Huang CH, Chen CC, Liou JS, Lee AY, Blom J, Lin YC, Huang L, Watanabe K	Int J Syst Evol Microbiol	10.1099/ijsem.0.003969	2020	*
Genetics	Draft genome sequence of Lactobacillus zeae KCTC 3804.	Kim DW, Choi SH, Kang A, Nam SH, Kim DS, Kim RN, Kim A, Park HS	J Bacteriol	10.1128/JB.05602-11	2011	*
Pathogenicity	Protective effect of Lactobacillus casei strain Shirota against lethal infection with multi-drug resistant Salmonella enterica serovar Typhimurium DT104 in mice.	Asahara T, Shimizu K, Takada T, Kado S, Yuki N, Morotomi M, Tanaka R, Nomoto K	J Appl Microbiol	10.1111/j.1365-2672.2010.04884.x	2010	*
Phylogeny	DNA-based classification and sequence heterogeneities in the 16S rRNA genes of Lactobacillus casei/paracasei and related species.	Vasquez A, Molin G, Pettersson B, Antonsson M, Ahrne S	Syst Appl Microbiol	10.1016/j.syapm.2005.02.011	2005	*
Phylogeny	Significant differences between Lactobacillus casei subsp. casei ATCC 393T and a commonly used plasmid-cured derivative revealed by a polyphasic study.	Acedo-Felix E, Perez-Martinez G	Int J Syst Evol Microbiol	10.1099/ijs.0.02325-0	2003	*
Phylogeny	Comparative sequence analysis of a recA gene fragment brings new evidence for a change in the taxonomy of the Lactobacillus casei group.	Felis GE, Dellaglio F, Mizzi L, Torriani S	Int J Syst Evol Microbiol	10.1099/00207713-51-6-2113	2001	*
Metabolism	Citrate utilization by homo- and heterofermentative lactobacilli.	Medina de Figueroa R, Alvarez F, Pesce de Ruiz Holgado A, Oliver G, Sesma F	Microbiol Res	10.1016/S0944-5013(00)80005-1	2000	*
Phylogeny	Reclassification of Lactobacillus casei subsp. casei ATCC 393 and Lactobacillus rhamnosus ATCC 15820 as Lactobacillus zeae nom. rev., designation of ATCC 334 as the neotype of L. casei subsp. casei, and rejection of the name Lactobacillus paracasei.	Dicks LM, Du Plessis EM, Dellaglio F, Lauer E	Int J Syst Bacteriol	10.1099/00207713-46-1-337	1996	*

References

#8608

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20178

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40580 ; Curators of the CIP;
#52785 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 35515

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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