Strain identifier

BacDive ID: 6565

Type strain: Yes

Species: Lactobacillus gallinarum

Strain Designation: 7 CCr87

Strain history: CIP <- 1992, F. Gasser, Inst. Pasteur, Paris, France, Lactobacillus acidophilus, group A4 <- J.L. Johnson, Blacksburg, USA: strain VPI 1294 <- W.E.C. Moore, Blacksburg, USA: strain 7 CCr87

NCBI tax ID(s): 1423748 (strain), 52242 (species)

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General

@ref: 3967

BacDive-ID: 6565

DSM-Number: 10532

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, rod-shaped

description: Lactobacillus gallinarum 7 CCr87 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from chicken crop.

NCBI tax id

NCBI tax idMatching level
1423748strain
52242species

strain history

@refhistory
3967<- NCFB <- J.L. Johnson, VPI 1294
67770ATCC 33199 <-- VPI 1294.
119516CIP <- 1992, F. Gasser, Inst. Pasteur, Paris, France, Lactobacillus acidophilus, group A4 <- J.L. Johnson, Blacksburg, USA: strain VPI 1294 <- W.E.C. Moore, Blacksburg, USA: strain 7 CCr87

doi: 10.13145/bacdive6565.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lactobacillus
  • species: Lactobacillus gallinarum
  • full scientific name: Lactobacillus gallinarum Fujisawa et al. 1992

@ref: 3967

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactobacillus

species: Lactobacillus gallinarum

full scientific name: Lactobacillus gallinarum Fujisawa et al. 1992

strain designation: 7 CCr87

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
119516positiverod-shaped
125438no91.5
125438positive93.795

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3967MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
38134MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
119516CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperature
3967positivegrowth37
38134positivegrowth37
50245positivegrowth37
67770positivegrowth37
119516positivegrowth37-45
119516nogrowth15

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
50245anaerobe
119516facultative anaerobe
125439obligate aerobe94.5

spore formation

  • @ref: 125438
  • spore formation: no
  • confidence: 92.349

murein

  • @ref: 3967
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11951617632nitrate-reduction
11951616301nitrite-reduction
11951617632nitrate+respiration
68371Potassium 5-ketogluconate-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin+builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837117754glycerol-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen+builds acid from
6837128017starch+builds acid from
6837116634raffinose+builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose+builds acid from
6837128053melibiose-builds acid from
6837117716lactose+builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin+builds acid from
683714853esculin+builds acid from
6837159640N-acetylglucosamine-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from

antibiotic resistance

  • @ref: 119516
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite tests

  • @ref: 119516
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
119516oxidase-
119516alcohol dehydrogenase-1.1.1.1
119516catalase-1.11.1.6
119516lysine decarboxylase-4.1.1.18
119516ornithine decarboxylase-4.1.1.17

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
3967----------++++---------+-+++++-+---+++------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic locationisolation date
3967chicken cropUSAUSANorth America
50245Chicken crop
67770Chicken crop
119516Animal, Normal chicken cropUnited States of AmericaUSANorth AmericaBlacksburg, Virginia1964

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture
#Host#Birds#Chicken

taxonmaps

  • @ref: 69479
  • File name: preview.99_206.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_46;96_146;97_157;98_175;99_206&stattab=map
  • Last taxonomy: Lactobacillus
  • 16S sequence: LC071810
  • Sequence Identity:
  • Total samples: 47444
  • soil counts: 2173
  • aquatic counts: 2250
  • animal counts: 42256
  • plant counts: 765

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
39671Risk group (German classification)
1195161Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Lactobacillus gallinarum 16S rRNA gene, strain ATCC 3319AJ2429681533nuccore52242
20218Lactobacillus gallinarum partial 16S rRNA gene and internal transcribed spacer 1 (ITS1), strain ATCC 33199AJ4177371606nuccore52242
20218Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceEF412999497nuccore52242
20218L.gallinarum 16S rRNA gene, partialX97898626nuccore52242
20218L.crispatus 16S rRNA gene, partialX98052652nuccore47770
20218Lactobacillus gallinarum partial 16S rRNA gene, type strain ATCC 33199TFR6830861518nuccore52242
20218Lactobacillus gallinarum strain DSM 10532 16S ribosomal RNA gene, partial sequenceEF468093419nuccore52242
20218Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: YIT 0218 (= JCM 2011)AB0082081532nuccore52242
20218Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: JCM 2011AB289122667nuccore52242
20218Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: JCM 2011AB5969471486nuccore52242
67770Lactobacillus gallinarum gene for 16S ribosomal RNA, partial sequence, strain: JCM 2011LC0718101460nuccore52242
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129751538nuccore1598
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129761538nuccore1598
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129771534nuccore1598
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129781488nuccore47493
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129791535nuccore1580
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129801530nuccore1580
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129811525nuccore1580
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129821526nuccore1580
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129831528nuccore1580
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129841531nuccore52242
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129851529nuccore52242
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129861536nuccore1624
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412987545nuccore1598
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412988539nuccore1598
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412989539nuccore1598
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412990543nuccore47493
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412991550nuccore1580
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412992550nuccore1580
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412993550nuccore1580
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412994550nuccore1580
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412995550nuccore1580
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412996538nuccore52242
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412997537nuccore52242
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412998541nuccore1624

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus gallinarum DSM 10532 = JCM 20111423748.3wgspatric1423748
66792Lactobacillus gallinarum JCM 20111236533.3wgspatric1423748
66792Lactobacillus gallinarum DSM 105322663762633draftimg1423748
66792Lactobacillus gallinarum JCM 20112585427877draftimg1423748
67770Lactobacillus gallinarum DSM 10532 = JCM 2011GCA_001434975scaffoldncbi1423748
67770Lactobacillus gallinarum DSM 10532 = JCM 2011GCA_000614735contigncbi1423748

GC content

@refGC-contentmethod
396735.9thermal denaturation, midpoint method (Tm)
6777036.5genome sequence analysis

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe94.5
125439BacteriaNetgram_stainReaction to gram-stainingpositive75.9
125439BacteriaNetmotilityAbility to perform movementno51.1
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes62.5
125438gram-positivegram-positivePositive reaction to Gram-stainingyes93.795no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no65.52no
125438spore-formingspore-formingAbility to form endo- or exosporesno92.349no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno96yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no96.551yes
125438motile2+flagellatedAbility to perform flagellated movementno91.5no

External links

@ref: 3967

culture collection no.: CCUG 30724, JCM 2011, CCM 4383, CIP 103611, DSM 10532, ATCC 33199, NCFB 2235, VPI 1294, BCRC 17266, KCTC 5048, LMG 9435, NCIMB 13223

straininfo link

  • @ref: 76037
  • straininfo: 3188

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny1503977Taxonomic study of the Lactobacillus acidophilus group, with recognition of Lactobacillus gallinarum sp. nov. and Lactobacillus johnsonii sp. nov. and synonymy of Lactobacillus acidophilus group A3 (Johnson et al. 1980) with the type strain of Lactobacillus amylovorus (Nakamura 1981).Fujisawa T, Benno Y, Yaeshima T, Mitsuoka TInt J Syst Bacteriol10.1099/00207713-42-3-4871992DNA, Bacterial/chemistry, Lactobacillus/*classification/genetics/physiology, Lactobacillus acidophilus/*classification, Nucleic Acid Hybridization, Phenotype, Sequence Homology, Nucleic AcidPhenotype
Metabolism30124967Targeted gene inactivation in Lactobacillus gallinarum ATCC 33199 using chromosomal integration.Askelson TE, McMullin AB, Duong TPoult Sci10.3382/ps/pey3632019Chromosomes, Bacterial, Gene Knockout Techniques, *Gene Silencing, Lactobacillus/*genetics, Lactose/metabolism, Mutagenesis, Insertional, beta-Galactosidase/genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3967Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10532)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10532
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38134Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15428
50245Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 30724)https://www.ccug.se/strain?id=30724
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76037Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3188.1StrainInfo: A central database for resolving microbial strain identifiers
119516Curators of the CIPCollection of Institut Pasteur (CIP 103611)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103611
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1