Strain identifier

BacDive ID: 6565

Type strain: Yes

Species: Lactobacillus gallinarum

Culture col. no.: CCUG 30724, JCM 2011, CCM 4383, CIP 103611, DSM 10532, ATCC 33199, NCFB 2235, VPI 1294

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General

@ref: 3967

BacDive-ID: 6565

DSM-Number: 10532

keywords: anaerobe, Bacteria, 16S sequence, genome sequence, mesophilic

description: Lactobacillus gallinarum CCUG 30724 is an anaerobe, mesophilic bacterium that was isolated from chicken crop.

strain history: <- NCFB <- J.L. Johnson, VPI 1294

doi: 10.13145/bacdive6565.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lactobacillus
  • species: Lactobacillus gallinarum
  • full scientific name: Lactobacillus gallinarum Fujisawa et al. 1992

@ref: 3967

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactobacillus

species: Lactobacillus gallinarum

full scientific name: Lactobacillus gallinarum Fujisawa et al. 1992

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3967MRS MEDIUM (DSMZ Medium 11)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium11.pdf
38134MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)

culture temp

@refgrowthtypetemperaturerange
3967positivegrowth37mesophilic
38134positivegrowth37mesophilic
50245positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 50245
  • oxygen tolerance: anaerobe

murein

  • @ref: 3967
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
3967----------++++---------+-+++++-+---+++------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
3967chicken cropUSAUSANorth America
50245Chicken crop

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture
#Host#Birds#Chicken

Safety information

risk assessment

  • @ref: 3967
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Lactobacillus gallinarum 16S rRNA gene, strain ATCC 3319AJ2429681533ena52242
20218Lactobacillus gallinarum partial 16S rRNA gene and internal transcribed spacer 1 (ITS1), strain ATCC 33199AJ4177371606ena52242
20218Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceEF412999497ena52242
20218L.gallinarum 16S rRNA gene, partialX97898626ena52242
20218L.crispatus 16S rRNA gene, partialX98052652ena47770
20218Lactobacillus gallinarum partial 16S rRNA gene, type strain ATCC 33199TFR6830861518ena52242
20218Lactobacillus gallinarum strain DSM 10532 16S ribosomal RNA gene, partial sequenceEF468093419ena52242
20218Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: YIT 0218 (= JCM 2011)AB0082081532ena52242
20218Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: JCM 2011AB289122667ena52242
20218Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: JCM 2011AB5969471486ena52242

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus gallinarum HFD4GCA_001314245completencbi52242
66792Lactobacillus gallinarum DSM 10532 = JCM 2011GCA_001434975scaffoldncbi1423748
66792Lactobacillus gallinarum DSM 10532 = JCM 2011GCA_000614735contigncbi1423748
66792Lactobacillus gallinarum An101GCA_002161165contigncbi52242
66792Lactobacillus gallinarum An115GCA_002161035contigncbi52242
66792Lactobacillus gallinarum An119GCA_002160975contigncbi52242
66792Lactobacillus gallinarum An153GCA_002160635contigncbi52242
66792Lactobacillus gallinarum DSM 10532 = JCM 20111423748.3wgspatric1423748
66792Lactobacillus gallinarum JCM 20111236533.3wgspatric1423748
66792Lactobacillus gallinarum strain An10152242.8wgspatric52242
66792Lactobacillus gallinarum strain An11552242.7wgspatric52242
66792Lactobacillus gallinarum strain An11952242.6wgspatric52242
66792Lactobacillus gallinarum strain An15352242.5wgspatric52242
66792Lactobacillus gallinarum strain HFD452242.4completepatric52242
66792Lactobacillus gallinarum strain HFD452242.10plasmidpatric52242
66792Lactobacillus gallinarum strain HFD452242.11plasmidpatric52242
66792Lactobacillus gallinarum strain HFD452242.13plasmidpatric52242
66792Lactobacillus gallinarum strain HFD452242.14plasmidpatric52242
66792Lactobacillus gallinarum strain HFD452242.12plasmidpatric52242

GC content

  • @ref: 3967
  • GC-content: 35.9
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 3967

culture collection no.: CCUG 30724, JCM 2011, CCM 4383, CIP 103611, DSM 10532, ATCC 33199, NCFB 2235, VPI 1294

straininfo link

@refpassport
20218http://www.straininfo.net/strains/13031
20218http://www.straininfo.net/strains/13028
20218http://www.straininfo.net/strains/13033

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3967Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10532)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10532
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38134Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15428
50245Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 30724)https://www.ccug.se/strain?id=30724
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)