Strain identifier

BacDive ID: 6565

Type strain: Yes

Species: Lactobacillus gallinarum

Strain Designation: 7 CCr87

Strain history: CIP <- 1992, F. Gasser, Inst. Pasteur, Paris, France, Lactobacillus acidophilus, group A4 <- J.L. Johnson, Blacksburg, USA: strain VPI 1294 <- W.E.C. Moore, Blacksburg, USA: strain 7 CCr87

NCBI tax ID(s): 1423748 (strain), 52242 (species)

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General

@ref: 3967

BacDive-ID: 6565

DSM-Number: 10532

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, rod-shaped

description: Lactobacillus gallinarum 7 CCr87 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from chicken crop.

NCBI tax id

NCBI tax idMatching level
52242species
1423748strain

strain history

@refhistory
3967<- NCFB <- J.L. Johnson, VPI 1294
67770ATCC 33199 <-- VPI 1294.
119516CIP <- 1992, F. Gasser, Inst. Pasteur, Paris, France, Lactobacillus acidophilus, group A4 <- J.L. Johnson, Blacksburg, USA: strain VPI 1294 <- W.E.C. Moore, Blacksburg, USA: strain 7 CCr87

doi: 10.13145/bacdive6565.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lactobacillus
  • species: Lactobacillus gallinarum
  • full scientific name: Lactobacillus gallinarum Fujisawa et al. 1992

@ref: 3967

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactobacillus

species: Lactobacillus gallinarum

full scientific name: Lactobacillus gallinarum Fujisawa et al. 1992

strain designation: 7 CCr87

type strain: yes

Morphology

cell morphology

  • @ref: 119516
  • gram stain: positive
  • cell shape: rod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3967MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
38134MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
119516CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperaturerange
3967positivegrowth37mesophilic
38134positivegrowth37mesophilic
50245positivegrowth37mesophilic
67770positivegrowth37mesophilic
119516positivegrowth37-45
119516nogrowth15psychrophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
50245anaerobe
119516facultative anaerobe

murein

  • @ref: 3967
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose+builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
119516nitrate-reduction17632
119516nitrite-reduction16301
119516nitrate+respiration17632

antibiotic resistance

  • @ref: 119516
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite tests

  • @ref: 119516
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
119516oxidase-
119516alcohol dehydrogenase-1.1.1.1
119516catalase-1.11.1.6
119516lysine decarboxylase-4.1.1.18
119516ornithine decarboxylase-4.1.1.17

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
3967----------++++---------+-+++++-+---+++------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic locationisolation date
3967chicken cropUSAUSANorth America
50245Chicken crop
67770Chicken crop
119516Animal, Normal chicken cropUnited States of AmericaUSANorth AmericaBlacksburg, Virginia1964

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture
#Host#Birds#Chicken

taxonmaps

  • @ref: 69479
  • File name: preview.99_206.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_46;96_146;97_157;98_175;99_206&stattab=map
  • Last taxonomy: Lactobacillus
  • 16S sequence: LC071810
  • Sequence Identity:
  • Total samples: 47444
  • soil counts: 2173
  • aquatic counts: 2250
  • animal counts: 42256
  • plant counts: 765

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
39671Risk group (German classification)
1195161Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Lactobacillus gallinarum 16S rRNA gene, strain ATCC 3319AJ2429681533ena52242
20218Lactobacillus gallinarum partial 16S rRNA gene and internal transcribed spacer 1 (ITS1), strain ATCC 33199AJ4177371606ena52242
20218Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceEF412999497ena52242
20218L.gallinarum 16S rRNA gene, partialX97898626ena52242
20218L.crispatus 16S rRNA gene, partialX98052652ena47770
20218Lactobacillus gallinarum partial 16S rRNA gene, type strain ATCC 33199TFR6830861518ena52242
20218Lactobacillus gallinarum strain DSM 10532 16S ribosomal RNA gene, partial sequenceEF468093419ena52242
20218Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: YIT 0218 (= JCM 2011)AB0082081532ena52242
20218Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: JCM 2011AB289122667ena52242
20218Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: JCM 2011AB5969471486ena52242
67770Lactobacillus gallinarum gene for 16S ribosomal RNA, partial sequence, strain: JCM 2011LC0718101460ena52242

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus gallinarum DSM 10532 = JCM 20111423748.3wgspatric1423748
66792Lactobacillus gallinarum JCM 20111236533.3wgspatric1423748
66792Lactobacillus gallinarum DSM 105322663762633draftimg1423748
66792Lactobacillus gallinarum JCM 20112585427877draftimg1423748
67770Lactobacillus gallinarum DSM 10532 = JCM 2011GCA_001434975scaffoldncbi1423748
67770Lactobacillus gallinarum DSM 10532 = JCM 2011GCA_000614735contigncbi1423748

GC content

@refGC-contentmethod
396735.9thermal denaturation, midpoint method (Tm)
6777036.5genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno95.542no
gram-positiveyes95.462no
anaerobicyes78.404no
halophileyes86.066no
spore-formingno95.687no
glucose-utilyes90.792no
thermophileno99.725yes
aerobicno97.678yes
flagellatedno97.212no
glucose-fermentyes90.77no

External links

@ref: 3967

culture collection no.: CCUG 30724, JCM 2011, CCM 4383, CIP 103611, DSM 10532, ATCC 33199, NCFB 2235, VPI 1294, BCRC 17266, KCTC 5048, LMG 9435, NCIMB 13223

straininfo link

  • @ref: 76037
  • straininfo: 3188

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny1503977Taxonomic study of the Lactobacillus acidophilus group, with recognition of Lactobacillus gallinarum sp. nov. and Lactobacillus johnsonii sp. nov. and synonymy of Lactobacillus acidophilus group A3 (Johnson et al. 1980) with the type strain of Lactobacillus amylovorus (Nakamura 1981).Fujisawa T, Benno Y, Yaeshima T, Mitsuoka TInt J Syst Bacteriol10.1099/00207713-42-3-4871992DNA, Bacterial/chemistry, Lactobacillus/*classification/genetics/physiology, Lactobacillus acidophilus/*classification, Nucleic Acid Hybridization, Phenotype, Sequence Homology, Nucleic AcidPhenotype
Metabolism30124967Targeted gene inactivation in Lactobacillus gallinarum ATCC 33199 using chromosomal integration.Askelson TE, McMullin AB, Duong TPoult Sci10.3382/ps/pey3632019Chromosomes, Bacterial, Gene Knockout Techniques, *Gene Silencing, Lactobacillus/*genetics, Lactose/metabolism, Mutagenesis, Insertional, beta-Galactosidase/genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3967Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10532)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10532
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38134Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15428
50245Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 30724)https://www.ccug.se/strain?id=30724
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76037Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3188.1StrainInfo: A central database for resolving microbial strain identifiers
119516Curators of the CIPCollection of Institut Pasteur (CIP 103611)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103611