Name: Fructilactobacillus lindneri KPA
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6479

Type strain:

Species: Fructilactobacillus lindneri

Strain Designation: KPA

Culture col. no.: DSM 20690, JCM 11027, CIP 102983, LMG 14528, NCFB 2809

Strain history: CIP <- 1987, DSM <- W. Back: strain KPA

NCBI tax ID(s): 53444 (species)

SI-ID 9757

LMG 14528, DSM 20690, NCFB 2809, NCIMB 13089, VTT E-91460, CIP 102983, JCM 11027, CECT 5957, KCTC 5088

Special Collections

Other strains from Fructilactobacillus lindneri

Section

When using BacDive for research please cite our paper

Fructilactobacillus lindneri KPA is a mesophilic bacterium that was isolated from spoilt beer.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Fructilactobacillus*
	Species	**Fructilactobacillus lindneri**
	Full Scientific Name (LPSN)	Fructilactobacillus lindneri (Back et al. 1997 ex Henneberg 1901) Zheng et al. 2020

Synonym

Lactobacillus lindneri

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	positive Confidence in %91.521

[Ref.: #125438]	Motility	no Confidence in %91

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9011]

Culture medium

PEDIOCOCCUS DAMNOSUS MEDIUM (DSMZ Medium 231)

[Ref.: #9011]

Culture medium growth

[Ref.: #9011]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9011]

Culture medium composition

expand / minimize

[Ref.: #40494]

Culture medium

MEDIUM 43 - for Lactobacillus hamsteri and Lactobacillus ruminis

[Ref.: #40494]

Culture medium growth

[Ref.: #40494]

Culture medium composition

expand / minimize

[Ref.: #120612]

Culture medium

CIP Medium 41

[Ref.: #120612]

Culture medium growth

[Ref.: #120612]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9011]	growth	28 °C
[Ref.: #40494]	growth	25 °C
[Ref.: #67770]	growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

obligate aerobe Confidence in %97.1

[Ref.: #125438]

Ability of spore formation

no Confidence in %93.244

[Ref.: #9011]	Murein short key	A11.31
[Ref.: #9011]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #9011]	15530	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #9011]	15529	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #9011]	15528	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #9011]	15527	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9011]	Sample type/isolated from	spoilt beer

[Ref.: #67770]	Sample type/isolated from	Spoiled beer

[Ref.: #120612]	Sample type/isolated from	Food, Spoiled beer
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Fermented
#Environmental	#Microbial community	-
#Engineered	#Food production	#Beverage

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC097078 (>99% sequence identity) for Fructilactobacillus lindneri subclade from Microbeatlas

Aquatic Samples	158
Soil Samples	95
Animal Samples	1526
Plant Samples	107
Total Samples	1886

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9011]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120612]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9011]	L.lindneri 16S rRNA gene, strain DSM 20690	X95421	1570	GenBank ENA	53444 tax ID
[Ref.: #67770]	Lactobacillus lindneri gene for 16S ribosomal RNA, partial sequence, strain: JCM 11027	LC097078	1509	GenBank ENA	53444 tax ID
[Ref.: #124043]	Lactobacillus lindneri gene for 16S rRNA, partial sequence, strain: JCM 11027.	AB289191	647	GenBank ENA	53444 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Fructilactobacillus lindneri DSM 20690 = JCM 11027	GCA_001438685	scaffold	GenBank ENA	1122148 tax ID
[Ref.: #66792]	Fructilactobacillus lindneri DSM 20690 = JCM 11027	GCA_001311115	contig	GenBank ENA	1122148 tax ID	*
[Ref.: #66792]	Lactobacillus lindneri DSM 20690 = JCM 11027	1122148.6	wgs	PATRIC	1122148 tax ID	*
[Ref.: #66792]	Lactobacillus lindneri DSM 20690 = JCM 11027	1122148.5	wgs	PATRIC	1122148 tax ID	*
[Ref.: #66792]	Lactobacillus lindneri DSM 20690 = JCM 11027 strain DSM 20690	1122148.7	wgs	PATRIC	1122148 tax ID	*
[Ref.: #66792]	Lactobacillus lindneri DSM 20690 = JCM 11027 strain TMW 1.88	1122148.8	wgs	PATRIC	1122148 tax ID	*

[Ref.: #9011]	GC-content	35.0 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	34.1 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	35 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Fructilactobacillus lindneri DSM 20690 = JCM 11027 DSM 20690 NCBI: GCA_900167245.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	91.521	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	77.198	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	90.781	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	93.244	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	92.475	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	91	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Fructilactobacillus lindneri DSM 20690 = JCM 11027 NCBI: GCA_900167245
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	97.1
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	75.7
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	70.1
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	74.5

Availability in culture collections External links

[Ref.: #9011]

Culture collection no.

DSM 20690, JCM 11027, CIP 102983, LMG 14528, NCFB 2809

[Ref.: #75952]

SI-ID 9757

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus ixorae sp. nov., isolated from a flower (West-Indian jasmine).	Techo S, Miyashita M, Shibata C, Tanaka N, Wisetkhan P, Visessanguan W, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001547	2016	*
Phylogeny	Lactobacillus vespulae sp. nov., isolated from gut of a queen wasp (Vespula vulgaris).	Hoang VA, Kim YJ, Nguyen NL, Kim SK, Yang DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.000420	2015	*
Enzymology	A specific oligonucleotide primer for the rapid detection of Lactobacillus lindneri by polymerase chain reaction.	Yasui T, Okamoto T, Taguchi H	Can J Microbiol	10.1139/m97-021	1997	*

References

#9011

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20690

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#40494 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75952

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID9757.1 )

#120612 Collection of Institut Pasteur ; Curators of the CIP; CIP 102983

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Fructilactobacillus lindneri DSM 20690 = JCM 11027 DSM 20690

Fructilactobacillus lindneri DSM 20690 = JCM 11027

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Change proposal