Fructilactobacillus lindneri (DSM 20690, KPA, NCFB 2809)

Name: Fructilactobacillus lindneri (DSM 20690, KPA, NCFB 2809)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6479

Type strain

Strain Designation KPA

Culture col. no. DSM 20690 KPA NCFB 2809 LMG 14528 CIP 102983 1 more

NCBI tax ID(s) 53444

Special Collections DSMZ JCM CIP

History <- W. Back, KPA CIP 102983 <-- DSM 20690 <-- W. Back KPA. CIP <- 1987, DSM <- W. Back: strain KPA

Links

Fructilactobacillus lindneri KPA is a mesophilic prokaryote that was isolated from spoilt beer.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 9757

LMG 14528,DSM 20690,NCFB 2809,NCIMB 13089,VTT E-91460,CIP 102983,JCM 11027,CECT 5957,KCTC 5088

@ref 20215

Last LPSN update 2026-02-09 11:19:13

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Fructilactobacillus

Species Fructilactobacillus lindneri

Full scientific name Fructilactobacillus lindneri (Back et al. 1997 ex Henneberg 1901) Zheng et al. 2020

Synonyms (1)

Lactobacillus lindneri

BacDive ID	Other strains from **Fructilactobacillus lindneri** (2)	Type strain
6480	F. lindneri IX A3a, DSM 20691, CIP 102984
6481	F. lindneri IX 6a, DSM 20692

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		91
125438		91.521	positive

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
9011	PEDIOCOCCUS DAMNOSUS MEDIUM (DSMZ Medium 231)	Medium recipe at MediaDive	Name: PEDIOCOCCUS DAMNOSUS MEDIUM (DSMZ Medium 231) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Yeast extract 5.0 g/l Na-acetate 5.0 g/l K2HPO4 2.0 g/l (NH4)3 citrate 2.0 g/l Tween 80 1.0 g/l Cysteine hydrochloride 0.5 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
40494	MEDIUM 43 - for Lactobacillus hamsteri and Lactobacillus ruminis		Distilled water make up to (900.000 ml);Man Rogosa Sharp broth (55.000 g);Cysteine hydrochloride 5 % solution - M0172 (100.000 ml)
120612	CIP Medium 41	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9011	positive	growth	28	mesophilic
40494	positive	growth	25	mesophilic
67770	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.1

Spore formation

@ref	Spore formation	Confidence
125438		93.244

Murein

@ref	Murein short key	Type
9011	A11.31	A4alpha L-Lys-D-Asp

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
9011	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
9011	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
9011	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
9011	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Fermented
#Environmental	#Microbial community	-
#Engineered	#Food production	#Beverage

Isolation

@ref	Sample type
9011	spoilt beer
67770	Spoiled beer
120612	Food, Spoiled beer

Taxonmaps

69479

Global distribution of 16S sequence LC097078 (>99% sequence identity) for Fructilactobacillus lindneri subclade from Microbeatlas

Aquatic Samples	158
Soil Samples	95
Animal Samples	1526
Plant Samples	107
Total Samples	1886

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9011	1	Risk group (German classification) According to TRBA 466
120612	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM290737v1 assembly for Fructilactobacillus lindneri DSM 20690 = JCM 11027 TMW 1.88	contig	GCA_002907375	1122148.8	2814123334	1122148	74.57
66792	IMG-taxon 2568526012 annotated assembly for Fructilactobacillus lindneri DSM 20690 = JCM 11027	scaffold	GCA_900167245	1122148.7	2568526012	1122148	71.88
67770	ASM143868v1 assembly for Fructilactobacillus lindneri DSM 20690 = JCM 11027	scaffold	GCA_001438685	1122148.6	2700989268	1122148	70.97
66792	ASM131111v1 assembly for Fructilactobacillus lindneri DSM 20690 = JCM 11027	contig	GCA_001311115	1122148.5	2681813008	1122148	34.67

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
9011	L.lindneri 16S rRNA gene, strain DSM 20690	X95421	1570	53444
67770	Lactobacillus lindneri gene for 16S ribosomal RNA, partial sequence, strain: JCM 11027	LC097078	1509	53444
124043	Lactobacillus lindneri gene for 16S rRNA, partial sequence, strain: JCM 11027.	AB289191	647	53444

GC content

@ref	GC-content (mol%)	Method
9011	35.0	thermal denaturation, midpoint method (Tm)
67770	34.1	genome sequence analysis
67770	35	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Fructilactobacillus lindneri DSM 20690 = JCM 11027
NCBI: GCA_900167245

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.10	no
125439	gram_stain	BacteriaNetⓘ	positive	75.70	no
125439	motility	BacteriaNetⓘ	no	70.10	no
125439	spore_formation	BacteriaNetⓘ	no	74.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Fructilactobacillus lindneri DSM 20690 = JCM 11027 DSM 20690
NCBI: GCA_900167245.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.52	no
125438	anaerobic	anaerobicⓘ	no	77.20	no
125438	aerobic	aerobicⓘ	no	90.78	no
125438	spore-forming	spore-formingⓘ	no	93.24	no
125438	thermophilic	thermophileⓘ	no	92.48	no
125438	flagellated	motile2+ⓘ	no	91.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	A specific oligonucleotide primer for the rapid detection of Lactobacillus lindneri by polymerase chain reaction.	Yasui T, Okamoto T, Taguchi H	Can J Microbiol	10.1139/m97-021	1997
	Philodulcilactobacillus myokoensis gen. nov., sp. nov., a fructophilic, acidophilic, and agar-phobic lactic acid bacterium isolated from fermented vegetable extracts.	Kouya T, Ishiyama Y, Ohashi S, Kumakubo R, Yamazaki T, Otaki T.	PLoS One	10.1371/journal.pone.0286677	2023
Phylogeny	Lactobacillus ixorae sp. nov., isolated from a flower (West-Indian jasmine).	Techo S, Miyashita M, Shibata C, Tanaka N, Wisetkhan P, Visessanguan W, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001547	2016
Phylogeny	Lactobacillus vespulae sp. nov., isolated from gut of a queen wasp (Vespula vulgaris).	Hoang VA, Kim YJ, Nguyen NL, Kim SK, Yang DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.000420	2015

References

#9011	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20690
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#40494	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120612	Collection of Institut Pasteur ; Curators of the CIP; CIP 102983
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Fructilactobacillus lindneri (DSM 20690, KPA, NCFB 2809)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Murein

Metabolite utilization

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002907375

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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