Strain identifier

BacDive ID: 6479

Type strain: Yes

Species: Fructilactobacillus lindneri

Strain Designation: KPA

Strain history: CIP <- 1987, DSM <- W. Back: strain KPA

NCBI tax ID(s): 53444 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.1 (current version):
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 9.1 (current version)

General

@ref: 9011

BacDive-ID: 6479

DSM-Number: 20690

keywords: genome sequence, 16S sequence, Bacteria

description: Fructilactobacillus lindneri KPA is a bacterium that was isolated from spoilt beer.

NCBI tax id

  • NCBI tax id: 53444
  • Matching level: species

strain history

@refhistory
9011<- W. Back, KPA
67770CIP 102983 <-- DSM 20690 <-- W. Back KPA.
120612CIP <- 1987, DSM <- W. Back: strain KPA

doi: 10.13145/bacdive6479.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Fructilactobacillus
  • species: Fructilactobacillus lindneri
  • full scientific name: Fructilactobacillus lindneri (Back et al. 1997 ex Henneberg 1901) Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus lindneri

@ref: 9011

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Fructilactobacillus

species: Fructilactobacillus lindneri

full scientific name: Fructilactobacillus lindneri (Back et al. 1997) Zheng et al. 2020

strain designation: KPA

type strain: yes

Morphology

cell morphology

@refgram stainconfidencemotility
69480positive91.521
6948091no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9011PEDIOCOCCUS DAMNOSUS MEDIUM (DSMZ Medium 231)yeshttps://mediadive.dsmz.de/medium/231Name: PEDIOCOCCUS DAMNOSUS MEDIUM (DSMZ Medium 231) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Yeast extract 5.0 g/l Na-acetate 5.0 g/l K2HPO4 2.0 g/l (NH4)3 citrate 2.0 g/l Tween 80 1.0 g/l Cysteine hydrochloride 0.5 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
40494MEDIUM 43 - for Lactobacillus hamsteri and Lactobacillus ruminisyesDistilled water make up to (900.000 ml);Man Rogosa Sharp broth (55.000 g);Cysteine hydrochloride 5 % solution - M0172 (100.000 ml)
120612CIP Medium 41yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=41

culture temp

@refgrowthtypetemperature
9011positivegrowth28
40494positivegrowth25
67770positivegrowth25

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 93.244

murein

  • @ref: 9011
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
9011-----------++---------------+---------------------
9011-----------++---------------+---------------------
9011-----------++------------+/---+---------------------
9011-----------++---------------+---------------------

Isolation, sampling and environmental information

isolation

@refsample type
9011spoilt beer
67770Spoiled beer
120612Food, Spoiled beer

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Fermented
#Environmental#Microbial community
#Engineered#Food production#Beverage

taxonmaps

  • @ref: 69479
  • File name: preview.99_2411.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_1300;97_1545;98_1881;99_2411&stattab=map
  • Last taxonomy: Fructilactobacillus lindneri subclade
  • 16S sequence: LC097078
  • Sequence Identity:
  • Total samples: 1886
  • soil counts: 95
  • aquatic counts: 158
  • animal counts: 1526
  • plant counts: 107

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
90111Risk group (German classification)
1206121Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
9011L.lindneri 16S rRNA gene, strain DSM 20690X954211570nuccore53444
67770Lactobacillus lindneri gene for 16S ribosomal RNA, partial sequence, strain: JCM 11027LC0970781509nuccore53444
124043Lactobacillus lindneri gene for 16S rRNA, partial sequence, strain: JCM 11027.AB289191647nuccore53444

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Fructilactobacillus lindneri DSM 20690 = JCM 11027 TMW 1.88GCA_002907375contigncbi1122148
66792Fructilactobacillus lindneri DSM 20690 = JCM 11027GCA_900167245scaffoldncbi1122148
66792Lactobacillus lindneri DSM 20690 = JCM 110271122148.6wgspatric1122148
66792Lactobacillus lindneri DSM 20690 = JCM 110271122148.5wgspatric1122148
66792Lactobacillus lindneri DSM 20690 = JCM 11027 strain DSM 206901122148.7wgspatric1122148
66792Lactobacillus lindneri DSM 20690 = JCM 11027 strain TMW 1.881122148.8wgspatric1122148
66792Fructilactobacillus lindneri JCM 110272681813008draftimg1122148
66792Fructilactobacillus lindneri DSM 206902568526012draftimg1122148
66792Fructilactobacillus lindneri DSM 206902700989268draftimg1122148
67770Fructilactobacillus lindneri DSM 20690 = JCM 11027GCA_001438685scaffoldncbi1122148
66792Fructilactobacillus lindneri DSM 20690 = JCM 11027GCA_001311115contigncbi1122148

GC content

@refGC-contentmethod
901135.0thermal denaturation, midpoint method (Tm)
6777034.1genome sequence analysis
6777035high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes91.521no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no77.198no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no90.781no
69480spore-formingspore-formingAbility to form endo- or exosporesno93.244no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno92.475no
69480flagellatedmotile2+Ability to perform flagellated movementno91no

External links

@ref: 9011

culture collection no.: DSM 20690, JCM 11027, CIP 102983, LMG 14528, NCFB 2809

straininfo link

  • @ref: 75952
  • straininfo: 9757

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology9090105A specific oligonucleotide primer for the rapid detection of Lactobacillus lindneri by polymerase chain reaction.Yasui T, Okamoto T, Taguchi HCan J Microbiol10.1139/m97-0211997Antibodies, Bacterial/immunology, Base Sequence, Beer/microbiology, DNA Primers/*genetics, DNA, Bacterial/analysis/genetics, Electrophoresis, Agar Gel, Immunodiffusion, Lactobacillus/*genetics/immunology/*isolation & purification, Molecular Sequence Data, Pediococcus/genetics, Polymerase Chain Reaction/*methods, RNA, Ribosomal, 16S/*genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic AcidPhylogeny
Phylogeny26297032Lactobacillus vespulae sp. nov., isolated from gut of a queen wasp (Vespula vulgaris).Hoang VA, Kim YJ, Nguyen NL, Kim SK, Yang DCInt J Syst Evol Microbiol10.1099/ijsem.0.0004202015Animals, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Female, Gastrointestinal Tract/*microbiology, Lactobacillus/*classification/genetics/isolation & purification, Molecular Sequence Data, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Wasps/*microbiologyGenetics
Phylogeny27902183Lactobacillus ixorae sp. nov., isolated from a flower (West-Indian jasmine).Techo S, Miyashita M, Shibata C, Tanaka N, Wisetkhan P, Visessanguan W, Tanasupawat SInt J Syst Evol Microbiol10.1099/ijsem.0.0015472016Bacillus coagulans, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, Flowers/*microbiology, Jasminum/*microbiology, Lactic Acid/biosynthesis, Lactobacillus/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, ThailandTranscriptome

Reference

@idauthorscataloguedoi/urltitle
9011Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20690)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20690
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
40494Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14729
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
75952Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID9757.1StrainInfo: A central database for resolving microbial strain identifiers
120612Curators of the CIPCollection of Institut Pasteur (CIP 102983)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102983
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy