Ligilactobacillus araffinosus (CCUG 32231, JCM 5667, DSM 20653)

Name: Ligilactobacillus araffinosus (CCUG 32231, JCM 5667, DSM 20653)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6417

Type strain

Strain Designation ML2

Culture col. no. CCUG 32231 JCM 5667 DSM 20653 ATCC 43235 ML2 3 more

NCBI tax ID(s) 1423820 147809

Special Collections DSMZ CCUG JCM CIP

History DSMZ <- T. Mitsuoka, ML2 JCM <-- T. Fujisawa ML 2. CIP <- 1988, DSM <- T. Mitsuoka: strain ML2

Links

Ligilactobacillus araffinosus ML2 is an anaerobe, Gram-positive, rod-shaped bacterium that was isolated from intestine of chicken.

Gram-positive rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 265419

LMG 10752,ATCC 43235,CCUG 32231,CIP 103145,DSM 20653,JCM 5667,LMG 18218,NCFB 2785,NCIMB 702785,LMG23560,LMG 23077

@ref 20215

Last LPSN update 2026-05-29 08:26:24

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Ligilactobacillus

Species Ligilactobacillus araffinosus

Full scientific name Ligilactobacillus araffinosus (Fujisawa et al. 1986) Zheng et al. 2020

Synonyms (1)

Lactobacillus aviarius subsp. araffinosus

BacDive ID	Other strains from **Ligilactobacillus araffinosus** (1)	Type strain
6418	L. araffinosus 1, DSM 20656

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
116469	positive	rod-shaped
125438	positive			93.68

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
8873	BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)	Medium recipe at MediaDive	Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water
8873	MRS MEDIUM WITH CYSTEINE (DSMZ Medium 232)	Medium recipe at MediaDive	Name: MRS MEDIUM WITH CYSTEINE (DSMZ Medium 232) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)2 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
40538	MEDIUM 43 - for Lactobacillus hamsteri and Lactobacillus ruminis		Distilled water make up to (900.000 ml);Man Rogosa Sharp broth (55.000 g);Cysteine hydrochloride 5 % solution - M0172 (100.000 ml)
116469	CIP Medium 41	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
8873	positive	growth	37
40538	positive	growth	37
50914	positive	growth	37
67770	positive	growth	37
116469	positive	growth	37
116469	negative	growth	15
116469	negative	growth	25
116469	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
8873	anaerobe
50914	anaerobe
125439	facultative anaerobe	92.644

Spore formation

@ref	Spore formation	Confidence
125438		94.329

Murein

@ref	Murein short key	Type
8873	A11.31	A4alpha L-Lys-D-Asp

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
116469	17632 ChEBI	nitrate	-	reduction
116469	17632 ChEBI	nitrate	+	respiration
116469	16301 ChEBI	nitrite	-	reduction
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116469	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
116469	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116469	alcohol dehydrogenase	+	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	+	3.2.1.31	from API zym
116469	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
116469	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116469	ornithine decarboxylase	-	4.1.1.17
116469	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
116469	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	teichoic acid biosynthesis	100	1 of 1
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	palmitate biosynthesis	100	22 of 22
66794	peptidoglycan biosynthesis	80	12 of 15
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	ppGpp biosynthesis	75	3 of 4
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	starch degradation	70	7 of 10
66794	sphingosine metabolism	66.67	4 of 6
66794	purine metabolism	64.89	61 of 94
66794	photosynthesis	64.29	9 of 14
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	vitamin B1 metabolism	61.54	8 of 13
66794	cellulose degradation	60	3 of 5
66794	pyrimidine metabolism	60	27 of 45
66794	glycogen metabolism	60	3 of 5
66794	glycolysis	58.82	10 of 17
66794	NAD metabolism	55.56	10 of 18
66794	serine metabolism	55.56	5 of 9
66794	pentose phosphate pathway	54.55	6 of 11
66794	butanoate fermentation	50	2 of 4
66794	C4 and CAM-carbon fixation	50	4 of 8
66794	glycogen biosynthesis	50	2 of 4
66794	gluconeogenesis	50	4 of 8
66794	acetate fermentation	50	2 of 4
66794	sulfopterin metabolism	50	2 of 4
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	urea cycle	46.15	6 of 13
66794	CO2 fixation in Crenarchaeota	44.44	4 of 9
66794	d-mannose degradation	44.44	4 of 9
66794	tetrahydrofolate metabolism	42.86	6 of 14
66794	glutathione metabolism	42.86	6 of 14
66794	mevalonate metabolism	42.86	3 of 7
66794	methylglyoxal degradation	40	2 of 5
66794	flavin biosynthesis	40	6 of 15
66794	arachidonate biosynthesis	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	non-pathway related	39.47	15 of 38
66794	ketogluconate metabolism	37.5	3 of 8
66794	lipid metabolism	35.48	11 of 31
66794	oxidative phosphorylation	34.07	31 of 91
66794	cyanate degradation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	formaldehyde oxidation	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	acetoin degradation	33.33	1 of 3
66794	methionine metabolism	30.77	8 of 26
66794	phenylalanine metabolism	30.77	4 of 13
66794	propionate fermentation	30	3 of 10
66794	Entner Doudoroff pathway	30	3 of 10
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	glutamate and glutamine metabolism	28.57	8 of 28
66794	cysteine metabolism	27.78	5 of 18
66794	degradation of hexoses	27.78	5 of 18
66794	d-xylose degradation	27.27	3 of 11
66794	metabolism of disaccharids	27.27	3 of 11
66794	vitamin B6 metabolism	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	isoleucine metabolism	25	2 of 8
66794	alanine metabolism	24.14	7 of 29
66794	tryptophan metabolism	23.68	9 of 38
66794	leucine metabolism	23.08	3 of 13
66794	sulfate reduction	23.08	3 of 13
66794	isoprenoid biosynthesis	23.08	6 of 26
66794	citric acid cycle	21.43	3 of 14
66794	tyrosine metabolism	21.43	3 of 14
66794	degradation of pentoses	21.43	6 of 28
66794	arginine metabolism	20.83	5 of 24
66794	histidine metabolism	20.69	6 of 29

Fatty acid profile

Metadata FA analysis

@ref

50914

Fatty acid	Percentage	ECL
C16:0	36.7	16
C18:1 ω7c /12t/9t	18.4	17.824
C18:1 ω9c	11.6	17.769
C18:2 ω6,9c/C18:0 ANTE	11.3	17.724
C18:0	10.8	18
C14:0	6	14
C16:1 ω7c	5.3	15.819

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116469	-	+	-	-	-	-	-	-	-	-	+	+	-	-	+	+	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
8873	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
116469	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Birds	#Chicken
#Host Body-Site	#Gastrointestinal tract	-

Isolation

@ref	Sample type
8873	intestine of chicken
50914	Chicken duodenum
67770	Chicken duodenum
116469	Animal, Intestinal content, healthy chicken

Taxonmaps

69479

Global distribution of 16S sequence JX986976 (>99% sequence identity) for Ligilactobacillus from Microbeatlas

Aquatic Samples	1732
Soil Samples	1429
Animal Samples	22696
Plant Samples	582
Total Samples	26439

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8873	1	Risk group (German classification) According to TRBA 466
116469	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM143537v1 assembly for Ligilactobacillus araffinosus DSM 20653	scaffold	GCA_001435375	1423820.4	2660238151	1423820	72.19

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Lactobacillus aviarius subsp. araffinosus gene for 16S rRNA, partial sequence, strain: JCM 5667	AB289043	680	147809
20218	Lactobacillus aviarius subsp. araffinosus strain LMG 23560 16S ribosomal RNA gene, partial sequence	JX986976	1515	147809
67770	Lactobacillus aviarius subsp. araffinosus gene for 16S ribosomal RNA, partial sequence, strain: JCM 5667	LC071826	1496	147809

GC content

8873

GC-content (mol%)41.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM143537v1 assembly for Ligilactobacillus araffinosus DSM 20653
NCBI: GCA_001435375

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	92.64	no
125439	gram_stain	BacteriaNetⓘ	variable	52.30	no
125439	motility	BacteriaNetⓘ	no	66.01	no
125439	spore_formation	BacteriaNetⓘ	no	69.32	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus aviarius subsp. araffinosus DSM 20653
PATRIC: 1423820.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.68	no
125438	anaerobic	anaerobicⓘ	no	55.79	yes
125438	spore-forming	spore-formingⓘ	no	94.33	no
125438	aerobic	aerobicⓘ	no	93.94	yes
125438	thermophilic	thermophileⓘ	no	95.50	no
125438	flagellated	motile2+ⓘ	no	89.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Intestinal microbiome changes in response to amino acid and micronutrient supplementation: secondary analysis of the AMAZE trial.	Mweetwa MN, Ahsan K, Louis-Auguste J, Besa E, Posma JM, McNulty N, Barrat MJ, Gordon J, Kelly P.	Gut Microbiome (Camb)	10.1017/gmb.2025.10011	2025
	In vivo manipulation of human gut Bacteroides fitness by abiotic oligosaccharides.	Wesener DA, Beller ZW, Hill MF, Yuan H, Belanger DB, Frankfater C, Terrapon N, Henrissat B, Rodionov DA, Leyn SA, Osterman A, van Hylckama Vlieg JET, Gordon JI.	Nat Chem Biol	10.1038/s41589-024-01763-6	2025
Enzymology	Genetic Heterogeneity of Alicyclobacillus Strains Revealed by RFLP Analysis of vdc Region and rpoB Gene.	Dekowska A, Niezgoda J, Sokolowska B.	Biomed Res Int	10.1155/2018/9608756	2018
	Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic food for malnutrition.	Chang HW, Lee EM, Wang Y, Zhou C, Pruss KM, Henrissat S, Chen RY, Kao C, Hibberd MC, Lynn HM, Webber DM, Crane M, Cheng J, Rodionov DA, Arzamasov AA, Castillo JJ, Couture G, Chen Y, Balcazo NP, Lebrilla CB, Terrapon N, Henrissat B, Ilkayeva O, Muehlbauer MJ, Newgard CB, Mostafa I, Das S, Mahfuz M, Osterman AL, Barratt MJ, Ahmed T, Gordon JI.	Nat Microbiol	10.1038/s41564-024-01628-7	2024
Metabolism	Products of gut microbial Toll/interleukin-1 receptor domain NADase activities in gnotobiotic mice and Bangladeshi children with malnutrition.	Weagley JS, Zaydman M, Venkatesh S, Sasaki Y, Damaraju N, Yenkin A, Buchser W, Rodionov DA, Osterman A, Ahmed T, Barratt MJ, DiAntonio A, Milbrandt J, Gordon JI.	Cell Rep	10.1016/j.celrep.2022.110738	2022
Enzymology	Microbial liberation of N-methylserotonin from orange fiber in gnotobiotic mice and humans.	Han ND, Cheng J, Delannoy-Bruno O, Webber D, Terrapon N, Henrissat B, Rodionov DA, Arzamasov AA, Osterman AL, Hayashi DK, Meynier A, Vinoy S, Desai C, Marion S, Barratt MJ, Heath AC, Gordon JI.	Cell	10.1016/j.cell.2022.06.004	2022
Metabolism	Bioremediation of a Common Product of Food Processing by a Human Gut Bacterium.	Wolf AR, Wesener DA, Cheng J, Houston-Ludlam AN, Beller ZW, Hibberd MC, Giannone RJ, Peters SL, Hettich RL, Leyn SA, Rodionov DA, Osterman AL, Gordon JI.	Cell Host Microbe	10.1016/j.chom.2019.09.001	2019
	Microbiota functional activity biosensors for characterizing nutrient metabolism in vivo.	Wesener DA, Beller ZW, Peters SL, Rajabi A, Dimartino G, Giannone RJ, Hettich RL, Gordon JI.	Elife	10.7554/elife.64478	2021

References

#8873	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20653
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#40538	; Curators of the CIP;
#50914	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 32231
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116469	Collection of Institut Pasteur ; Curators of the CIP; CIP 103145
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Ligilactobacillus araffinosus (CCUG 32231, JCM 5667, DSM 20653)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Murein

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

Fatty acid profile

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001435375

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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