Name: Pediococcus pentosaceus DSM 20336
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6393

Type strain:

Species: Pediococcus pentosaceus

Culture col. no.: DSM 20336, ATCC 33316, NCDO 990, WDCM 00158, CCUG 32205, JCM 5890, BCC 4305, BCRC 12843, CECT 4695, CGMCC 1.2695, CIP 102260, KCTC 3507, LMG 11488, NBRC 107768, NCIMB 12012, NCTC 12956, VTT E-88317

Strain history: ATCC 33316 <-- NCDO 990 <-- H. Hoffman <-- P. C. Mees <-- C. B. van Niel.

NCBI tax ID(s): 1255 (species)

Other strains from Pediococcus pentosaceus

Section

Pediococcus pentosaceus DSM 20336 is an anaerobe, mesophilic human pathogen that was isolated from dried American beer yeast.

anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Pediococcus*
	Species	**Pediococcus pentosaceus**
	Full Scientific Name (PNU)	Pediococcus pentosaceus Mees 1934 (Approved Lists 1980)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8727]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #8727]

Culture medium growth

[Ref.: #8727]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #8727]

Culture medium composition

expand / minimize

[Ref.: #41644]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #41644]

Culture medium growth

[Ref.: #41644]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8727]	growth	30 °C
[Ref.: #41644]	growth	30 °C
[Ref.: #50896]	growth	37 °C
[Ref.: #50896]	growth	30-37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #8727]	Temperature range	mesophilic
[Ref.: #41644]	Temperature range	mesophilic
[Ref.: #50896]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #50896]	Oxygen tolerance	anaerobe
[Ref.: #50896]	Oxygen tolerance	microaerophile

[Ref.: #8727]	Murein short key	A11.31
[Ref.: #8727]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8727]	8611	-	-	-	-	+	+	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	-	+	+	+	-	-	+	-	-	-	+	-	-	+	-	-	-	-	-	-	-
[Ref.: #8727]	8550	-	-	-	-	-	+	+	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	-	+	+	+	-	-	+	-	-	-	+	-	-	+	-	-	-	-	-	-	-
[Ref.: #8727]	8285	-	-	-	-	+	+	+	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	+	+	+	+	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-
[Ref.: #8727]	8284	-	-	-	-	+	+	+	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	+	+	+	+	-	-	+	-	-	-	+	-	-	+	-	-	-	-	-	-	-
[Ref.: #8727]	8283	-	-	-	-	+	+	+	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	+	+	+	+	-	-	+	-	-	-	+	-	-	+	-	-	-	-	-	-	-
[Ref.: #8727]	8282	-	-	-	-	+	+	+	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	+/-	+	+	+	-	-	+	-	-	-	+	-	-	+	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8727]	Sample type/isolated from	dried American beer yeast

[Ref.: #50896]	Sample type/isolated from	Dried American beer yeast
[Ref.: #50896]	Sampling date	1931

[Ref.: #67770]	Sample type/isolated from	Dried American beer yeast
* marker position based on {}

Isolation sources categories

#Host

#Yeast

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC071837 (>99% sequence identity) for Pediococcus from Microbeatlas

Aquatic Samples	2228
Soil Samples	2103
Animal Samples	26184
Plant Samples	1535
Total Samples	32050

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8727]	Pathogenicity (human)	yes, in single cases
[Ref.: #8727]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pediococcus pentosaceus gene for 16S ribosomal RNA, partial sequence, strain: JCM 5890	LC071837	1509	ENA	1255 tax ID
[Ref.: #20218]	Pediococcus pentosaceus clone P16 16S ribosomal RNA gene, partial sequence	AF404725	516	ENA	1255 tax ID	*
[Ref.: #20218]	Pediococcus pentosaceus clone P16 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF405369	536	ENA	1255 tax ID	*
[Ref.: #20218]	Pediococcus pentosaceus strain CCUG32205 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequence	KC767943	236	ENA	1255 tax ID	*
[Ref.: #20218]	Pediococcus pentosaceus 16S rRNA gene, strain DSM 20336 (T)	AJ305321	1569	ENA	1255 tax ID	*
[Ref.: #20218]	Pediococcus pentosaceus 16S ribosomal RNA	M58834	1582	ENA	1255 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pediococcus pentosaceus ATCC 33316	GCA_004354495	contig	GenBank	1255 tax ID
[Ref.: #66792]	Pediococcus pentosaceus LMG 11488	GCA_029823395.1	contig	GenBank	1255 tax ID	*
[Ref.: #66792]	Pediococcus pentosaceus strain ATCC 33316	1255.112	wgs	PATRIC	1255 tax ID	*
[Ref.: #66792]	Pediococcus pentosaceus strain DSM 20336	1255.14	wgs	PATRIC	1255 tax ID	*
[Ref.: #66792]	Pediococcus pentosaceus strain FDAARGOS_1009 strain Not applicable	1255.195	complete	PATRIC	1255 tax ID	*
[Ref.: #66792]	Pediococcus pentosaceus strain NBRC 107768	1255.124	wgs	PATRIC	1255 tax ID	*

[Ref.: #8727]	GC-content	38.6 mol%
[Ref.: #67770]	GC-content	37.8 mol%

Availability in culture collections External links

[Ref.: #8727]

Culture collection no.

DSM 20336, ATCC 33316, NCDO 990, WDCM 00158, CCUG 32205, JCM 5890, BCC 4305, BCRC 12843, CECT 4695, CGMCC 1.2695, CIP 102260, KCTC 3507, LMG 11488, NBRC 107768, NCIMB 12012, NCTC 12956, VTT E-88317

[Ref.: #20218]

Associated Passport(s) in StrainInfo

52999, 52996, 109150, 866294

Literature:

	Title	Authors	Journal	DOI	Year
Phylogeny	Pediococcus lolii sp. nov., isolated from ryegrass silage.	Doi K, Nishizaki Y, Fujino Y, Ohshima T, Ohmomo S, Ogata S	Int J Syst Evol Microbiol	10.1099/ijs.0.005793-0	2009	*
	Antibacterial activity of supernatants of Lactoccocus lactis, Lactobacillus rhamnosus, Pediococcus pentosaceus and curcumin against Aeromonas hydrophila. In vitro study.	Ibarra-Martinez D, Munoz-Ortega MH, Quintanar-Stephano A, Martinez-Hernandez SL, Avila-Blanco ME, Ventura-Juarez J	Vet Res Commun	10.1007/s11259-021-09871-7	2022	*
	Effects of pure starter cultures on physico-chemical and sensory quality of dry fermented Chinese-style sausage.	Rai KP, Zhang C, Xia WS	J Food Sci Technol	10.1007/s13197-010-0030-4	2010	*
	Pediococcus pentosaceus IMI 507025 genome sequencing data.	Nikodinoska I, Makkonen J, Blande D, Moran C	Data Brief	10.1016/j.dib.2022.108446	2022	*

References

#8727

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20336

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41644 ; Curators of the CIP;
#50896 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 32205

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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