Name: Pediococcus pentosaceus Coster R 3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6394

Type strain:

Species: Pediococcus pentosaceus

Strain Designation: Coster R 3

Culture col. no.: CCUG 28436, DSM 46292, CCM 822, IFO 12229, IMET 10900, NBRC 12229, SG 1468

Strain history: <- IMET <- CCM (Pediococcus cerevisiae) <- E. Coster

NCBI tax ID(s): 1255 (species)

SI-ID 50799

CCUG 28436, CCM 822, DSM 46292, IMET 10900, VKM B-583, NBRC 12229, BCRC 14015, CCRC 14015, IFO 12229

Other strains from Pediococcus pentosaceus

Section

Pediococcus pentosaceus Coster R 3 is a mesophilic human pathogen that was isolated from cheddar cheese.

human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Pediococcus*
	Species	**Pediococcus pentosaceus**
	Full Scientific Name (LPSN)	Pediococcus pentosaceus Mees 1934 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %94.183

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12507]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #12507]

Culture medium growth

[Ref.: #12507]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12507]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #12507]			growth	30 °C

[Ref.: #12507]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.957

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #49239]

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	36.6	17.824
C16:0	28.9	16
C18:2 ω6,9c/C18:0 ANTE	12.8	17.724
C16:1 ω7c	7.9	15.819
C19:0 CYCLO ω9c	5.4	18.87
C18:1 ω9c	2.2	17.769
C18:0	2	18
C19:0	1.6	19
C14:0	1.4	14
C17:0 CYCLO	1.2	16.888

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12507]	Sample type/isolated from	cheddar cheese
[Ref.: #12507]	Country	New Zealand
[Ref.: #12507]	Country ISO 3 Code	NZL
[Ref.: #12507]	Continent	Australia and Oceania

[Ref.: #49239]	Sample type/isolated from	Cheese,New Zealand Cheddar
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Dairy product

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB680264 (>99% sequence identity) for Pediococcus from Microbeatlas

Aquatic Samples	2228
Soil Samples	2103
Animal Samples	26184
Plant Samples	1535
Total Samples	32050

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12507]	Pathogenicity (human)	yes, in single cases
[Ref.: #12507]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Pediococcus pentosaceus gene for 16S rRNA, partial sequence, strain: NBRC 12229	AB680264	1503	ENA	1255 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pediococcus pentosaceus strain DSM 46292	1255.184	wgs	PATRIC	1255 tax ID	*
[Ref.: #66792]	Pediococcus pentosaceus DSM 46292	GCA_015613265	scaffold	GenBank	1255 tax ID	*

[Ref.: #12507]

GC-content

38.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pediococcus pentosaceus DSM 46292 NCBI: GCA_015613265.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pediococcus pentosaceus DSM 46292 NCBI: GCA_015613265.1
[Ref.: #69480]	motile	no	94.829	no
[Ref.: #69480]	flagellated	no	98.279	no
[Ref.: #69480]	gram-positive	yes	97.27	no
[Ref.: #69480]	anaerobic	no	85.074	no
[Ref.: #69480]	aerobic	no	97.39	no
[Ref.: #69480]	halophile	yes	92.667	no
[Ref.: #69480]	spore-forming	no	95.75	no
[Ref.: #69480]	glucose-util	yes	92.088	no
[Ref.: #69480]	thermophile	no	99.416	no
[Ref.: #69480]	glucose-ferment	yes	90.977	no

Availability in culture collections External links

[Ref.: #12507]

Culture collection no.

CCUG 28436, DSM 46292, CCM 822, IFO 12229, IMET 10900, NBRC 12229, SG 1468

[Ref.: #75867]

SI-ID 50799

References

#12507

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46292

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#49239 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 28436

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75867

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID50799.1 )

* These data were automatically processed and therefore are not curated

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Pediococcus pentosaceus DSM 46292

Pediococcus pentosaceus DSM 46292

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