Name: Anaerostipes butyraticus 35-7
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6340

Type strain:

Species: Anaerostipes butyraticus

Strain Designation: 35-7

Culture col. no.: DSM 22094, JCM 17466, LMG 24724

Strain history: DSM 22094 <-- V. Eeckhaut 35-7.

NCBI tax ID(s): 645466 (species)

SI-ID 370145

DSM 22094, LMG 24724, JCM 17466, KCTC 15125

Special Collections

Section

Anaerostipes butyraticus 35-7 is an anaerobe, spore-forming, Gram-positive bacterium that was isolated from caecal content of a 4-week-old broiler chicken.

Gram-positive
rod-shaped
spore-forming
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Anaerostipes*
	Species	**Anaerostipes butyraticus**
	Full Scientific Name (LPSN)	Anaerostipes butyraticus Eeckhaut et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29535]	Gram stain	positive

[Ref.: #29535]	Cell length	10 µm

[Ref.: #29535]	Cell shape	rod-shaped

[Ref.: #29535]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16136]

Culture medium

PY + X MEDIUM (DSMZ Medium 104b)

[Ref.: #16136]

Culture medium growth

[Ref.: #16136]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16136]

Culture medium composition

expand / minimize

[Ref.: #16136]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #16136]

Culture medium growth

[Ref.: #16136]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16136]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16136]	growth	40 °C
[Ref.: #29535]	growth	35-47 °C
[Ref.: #29535]	optimum	39 °C
[Ref.: #67770]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #29535]			optimum	6
[Ref.: #29535]			growth	5.5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16136]	Oxygen tolerance	anaerobe
[Ref.: #29535]	Oxygen tolerance	anaerobe

[Ref.: #29535]

Ability of spore formation

yes

[Ref.: #16136]

Name of produced compound

butyrate

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29535]	cellobiose ChEBI	+	carbon source
[Ref.: #29535]	glucose ChEBI	+	carbon source
[Ref.: #29535]	maltose ChEBI	+	carbon source
[Ref.: #29535]	mannitol ChEBI	+	carbon source
[Ref.: #29535]	mannose ChEBI	+	carbon source
[Ref.: #29535]	raffinose ChEBI	+	carbon source
[Ref.: #29535]	salicin ChEBI	+	carbon source
[Ref.: #29535]	sorbitol ChEBI	+	carbon source
[Ref.: #29535]	sucrose ChEBI	+	carbon source
[Ref.: #29535]	trehalose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29535]		acid phosphatase	+	3.1.3.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16136]	Sample type/isolated from	caecal content of a 4-week-old broiler chicken
[Ref.: #16136]	Geographic location (country and/or sea, region)	Ghent
[Ref.: #16136]	Country	Belgium
[Ref.: #16136]	Country ISO 3 Code	BEL
[Ref.: #16136]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Cecal content of a 4-week-old broiler chicken in Ghent
[Ref.: #67770]	Country	Belgium
[Ref.: #67770]	Country ISO 3 Code	BEL
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Birds	#Chicken
#Host Body-Site	#Gastrointestinal tract	#Large intestine
#Host Body Product	#Gastrointestinal tract	#Caecal content

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ947528 (>99% sequence identity) for Anaerostipes butyraticus subclade from Microbeatlas

Aquatic Samples	39
Soil Samples	109
Animal Samples	3313
Plant Samples	6
Total Samples	3467

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16136]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16136]	Anaerostipes butyraticus strain 35-7 16S ribosomal RNA gene, partial sequence	FJ947528	1381	GenBank ENA	645466 tax ID
[Ref.: #20218]	Anaerostipes butyraticus gene for 16S ribosomal RNA, partial sequence, strain: JCM 17466	AB616134	1495	GenBank ENA	645466 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Anaerostipes butyraticus JCM 17466	GCA_016586355	contig	GenBank ENA	645466 tax ID	*
[Ref.: #66792]	Anaerostipes butyraticus strain JCM 17466	645466.3	wgs	PATRIC	645466 tax ID	*

[Ref.: #16136]	GC-content	44 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29535]	GC-content	44 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Anaerostipes butyraticus strain JCM 17466 PATRIC: 645466.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	61	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Anaerostipes butyraticus strain JCM 17466 PATRIC: 645466.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	83.097	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	89.267	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	97.571	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	56.308	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.556	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	78.956	yes

Availability in culture collections External links

[Ref.: #16136]

Culture collection no.

DSM 22094, JCM 17466, LMG 24724

[Ref.: #75814]

SI-ID 370145

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Anaerostipes faecalis sp. nov., a new segmented filamentous bacterium isolated from swine faeces.	Choi SH, Choi JY, Park JE, Kim JS, Kang SW, Lee J, Lee MK, Lee JS, Lee JH, Jung H, Hur TY, Kim HB, Lee JH, Kim JK, Hong Y, Park SH	Antonie Van Leeuwenhoek	10.1007/s10482-021-01646-z	2021	*
Phylogeny	Anaerostipes butyraticus sp. nov., an anaerobic, butyrate-producing bacterium from Clostridium cluster XIVa isolated from broiler chicken caecal content, and emended description of the genus Anaerostipes.	Eeckhaut V, Van Immerseel F, Pasmans F, De Brandt E, Haesebrouck F, Ducatelle R, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.015289-0	2009	*

References

#16136

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22094

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#29535

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25932 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75814

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID370145.1 )

#25932

IJSEM 1108 2010 ( DOI 10.1099/ijs.0.015289-0 , PubMed 19666785 )

* These data were automatically processed and therefore are not curated

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Anaerostipes butyraticus strain JCM 17466

Anaerostipes butyraticus strain JCM 17466

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